ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHL1_ARATH (Q05085) Nitrate/chlorate transporter 155 1e-37
2PTR2_ARATH (P46032) Peptide transporter PTR2 (Histidine-transpor... 130 3e-30
3S15A1_RABIT (P36836) Oligopeptide transporter, small intestine i... 37 0.077
4VSIB_TRYBB (P07208) Variant surface glycoprotein ILTAT 1.1BC pre... 33 1.1
5OPT1_DROME (P91679) Oligopeptide transporter 1 (Protein YIN) 32 1.9
6S15A2_HUMAN (Q16348) Oligopeptide transporter, kidney isoform (P... 32 1.9
7SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu... 32 2.5
8DNMT1_PARLI (Q27746) DNA (cytosine-5)-methyltransferase PliMCI (... 32 2.5
9GPMI_MYCGA (Q7NAQ5) 2,3-bisphosphoglycerate-independent phosphog... 31 3.2
10S15A2_RABIT (P46029) Oligopeptide transporter, kidney isoform (P... 31 4.2
11GIDB_ZYMMO (Q5NL06) Methyltransferase gidB (EC 2.1.-.-) (Glucose... 30 7.2
12SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dep... 30 9.4
13S15A2_RAT (Q63424) Oligopeptide transporter, kidney isoform (Pep... 30 9.4

>CHL1_ARATH (Q05085) Nitrate/chlorate transporter|
          Length = 590

 Score =  155 bits (391), Expect = 1e-37
 Identities = 79/154 (51%), Positives = 94/154 (61%)
 Frame = -1

Query: 660 LQRIGIGLVLSILAMTSAALVEIKRLRVARESAVPEGAPVPMTVFWLIPQFFFVGAGEAF 481
           LQRIG+GL    +AM  AALVE+KRLR A     P    +P+  + LIPQ+  VG GEA 
Sbjct: 420 LQRIGLGLFFGSMAMAVAALVELKRLRTAHAHG-PTVKTLPLGFYLLIPQYLIVGIGEAL 478

Query: 480 TYIGQLDFFLRECPKGMKTMXXXXXXXXXXXXXXXXSALVTVVHKITGDRRPWIADDLNK 301
            Y GQLDFFLRECPKGMK M                S LVT+V K TG   PWIADDLNK
Sbjct: 479 IYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADDLNK 538

Query: 300 GELYKFYWLLAGVCLANLVVYLFAARWYKYKAGR 199
           G LY FYWL+A +   N +++L  ++WY YK  R
Sbjct: 539 GRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKR 572



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>PTR2_ARATH (P46032) Peptide transporter PTR2 (Histidine-transporting protein)|
          Length = 585

 Score =  130 bits (328), Expect = 3e-30
 Identities = 70/169 (41%), Positives = 99/169 (58%), Gaps = 3/169 (1%)
 Frame = -1

Query: 705 PLPAASMATRTGSPRLQRIGIGLVLSILAMTSAALVEIKRLRVARESAVPE-GAPVPMTV 529
           PL         G   +QR+GIGL +S+L M +AA+VEI RL +A +  + E GAPVP++V
Sbjct: 413 PLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISV 472

Query: 528 FWLIPQFFFVGAGEAFTYIGQLDFFLRECPKGMKTMXXXXXXXXXXXXXXXXSALVTVVH 349
            W IPQ+F +GA E F +IGQL+FF  + P  M+++                S ++T+V 
Sbjct: 473 LWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVT 532

Query: 348 KIT--GDRRPWIADDLNKGELYKFYWLLAGVCLANLVVYLFAARWYKYK 208
             T    +  WI+D+LN G L  F+WLLAG+ L N+ VY F+A  YK K
Sbjct: 533 YFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581



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>S15A1_RABIT (P36836) Oligopeptide transporter, small intestine isoform (Peptide|
           transporter 1) (Intestinal H(+)/peptide cotransporter)
           (Solute carrier family 15 member 1)
          Length = 707

 Score = 36.6 bits (83), Expect = 0.077
 Identities = 29/112 (25%), Positives = 45/112 (40%)
 Frame = -1

Query: 546 PVPMTVFWLIPQFFFVGAGEAFTYIGQLDFFLRECPKGMKTMXXXXXXXXXXXXXXXXSA 367
           P  M + W IPQ+F + +GE    I  L+F   + P  MK++                  
Sbjct: 575 PNTMNMAWQIPQYFLITSGEVVFSITGLEFSYSQAPSNMKSVLQAGWLLTVAVGN----- 629

Query: 366 LVTVVHKITGDRRPWIADDLNKGELYKFYWLLAGVCLANLVVYLFAARWYKY 211
              +V  + G      A  +NK   +  Y L A + L   V++   AR+Y Y
Sbjct: 630 --IIVLIVAG------AGQINK--QWAEYILFAALLLVVCVIFAIMARFYTY 671



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>VSIB_TRYBB (P07208) Variant surface glycoprotein ILTAT 1.1BC precursor (VSG)|
          Length = 471

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
 Frame = +2

Query: 458 KSSCPM*VKASPAPTKKNCGMSQKTVMGT-------GAPSGT-----ADSRATRRRLIST 601
           K  C M V+ +    K+N  ++QK ++GT       G  + T     ++S  TRR  + T
Sbjct: 47  KKHCQMRVQTAVRKQKENGKLAQKLLIGTITSTAGGGEQTSTTSFLLSNSSPTRRETLET 106

Query: 602 SAAEVMARME 631
           + AE+M+++E
Sbjct: 107 NQAEIMSQLE 116



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>OPT1_DROME (P91679) Oligopeptide transporter 1 (Protein YIN)|
          Length = 743

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 25/113 (22%), Positives = 46/113 (40%)
 Frame = -1

Query: 537 MTVFWLIPQFFFVGAGEAFTYIGQLDFFLRECPKGMKTMXXXXXXXXXXXXXXXXSALVT 358
           +++ W +PQ   + A E    +  L+F   + P  MK++                  +V 
Sbjct: 591 VSILWQLPQIVVMTAAEVMFSVTGLEFSYSQSPPSMKSV--LQACWLLSVAIGNMLVVVI 648

Query: 357 VVHKITGDRRPWIADDLNKGELYKFYWLLAGVCLANLVVYLFAARWYKYKAGR 199
              K T  +          GE    + L A + L +++++L+ AR Y+YK  R
Sbjct: 649 AEFKFTSSQ---------SGE----FTLFASLMLVDMMIFLWLARSYQYKDQR 688



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>S15A2_HUMAN (Q16348) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 537 MTVFWLIPQFFFVGAGEAFTYIGQLDFFLRECPKGMKTM 421
           M++ W +PQ+  V AGE    +  L+F   + P  MK++
Sbjct: 606 MSIRWQLPQYALVTAGEVMFSVTGLEFSYSQAPSSMKSV 644



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>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 25/80 (31%), Positives = 34/80 (42%)
 Frame = +1

Query: 421 HGLHPLGALAEEEVELSDVGEGLAGADKKKLRDEPEDRHGHGGALRDGGLPRHAEALDLD 600
           HG H  G   E+E  +S      +   +  LR  P    GHGG   +G      E +  +
Sbjct: 149 HGSHGHGHEEEDEDVIS------SERPRHVLRRAPR---GHGGE-EEGEEEEEEEEVSPE 198

Query: 601 ERGGGHGKDGEHETDADPLE 660
            R  GHGK+ E + D D  E
Sbjct: 199 HRHRGHGKEDEEDEDDDSTE 218



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>DNMT1_PARLI (Q27746) DNA (cytosine-5)-methyltransferase PliMCI (EC 2.1.1.37)|
           (Dnmt1) (DNA methyltransferase PliMCI) (DNA MTase
           PliMCI) (MCMT) (M.PliMCI)
          Length = 1612

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = +1

Query: 448 AEEEVELSDVGEGLAGADKKKLRDEPEDRHGHGGALRDGGLPRHAEALDLDERGGGHGKD 627
           +EEE+++     G  G+ KKK         G GG   D G  R  + L  DER G   K+
Sbjct: 155 SEEEMDMDTPTSGKGGSKKKK------KSKGSGGG--DAGKGRKRKVLGDDERDGVEKKE 206

Query: 628 GE 633
           GE
Sbjct: 207 GE 208



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>GPMI_MYCGA (Q7NAQ5) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 503

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 424 GLHPLGALAEEEVELSDVGEGLAGADKKKLRDEPEDRHGHGGALRDGGL 570
           G++P       ++E + +GE L  A+KK+LR    +++ H     DGG+
Sbjct: 294 GINPSAICYPPKIEKNTLGEVLKNANKKQLRIAETEKYAHVTFFFDGGV 342



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>S15A2_RABIT (P46029) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 537 MTVFWLIPQFFFVGAGEAFTYIGQLDFFLRECPKGMKTM 421
           +++ W +PQ+  V AGE    +  L+F   + P  MK++
Sbjct: 606 VSIAWQLPQYALVTAGEVMFSVTGLEFSYSQAPSSMKSV 644



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>GIDB_ZYMMO (Q5NL06) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited|
           division protein B)
          Length = 221

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = -1

Query: 642 GLVLSILAMTSAALVEIKRLRVARESAVPEGAPVPMTVFW-----LIPQFFFVGAGEAFT 478
           G++++IL+  +  LVE +R RV       E A  P+T+       + PQ F +    AF 
Sbjct: 90  GIIIAILSEMAVTLVESRRKRVEFLEKAAEAAGTPVTILGQRLENIEPQAFDIITARAFA 149

Query: 477 YIGQL 463
            + +L
Sbjct: 150 PLDKL 154



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>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 2 (SWI/SNF
           complex 170 kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
 Frame = +1

Query: 439 GALAEEEVELSDVG------EGLAGADKKKLRDEPEDRHGHGGALRDGGLPRHAEALDLD 600
           G  ++E   + + G      EG A  +KK    EP++    GGA+ +    + +EA   D
Sbjct: 742 GTTSDEPERIEESGNDEARVEGQATDEKK----EPKEPREGGGAIEEEAKEKTSEAPKKD 797

Query: 601 ERGGGHGKDGEHE---TDADPL 657
           E  G  G D E E   +D DP+
Sbjct: 798 EEKGKEG-DSEKESEKSDGDPI 818



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>S15A2_RAT (Q63424) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 555 EGAPV-PMTVFWLIPQFFFVGAGEAFTYIGQLDFFLRECPKGMKTM 421
           E  PV  +++ W +PQ+  V A E    +  L+F   + P  MK++
Sbjct: 599 EDIPVNKLSIAWQLPQYVLVTAAEVMFSVTGLEFSYSQAPSSMKSV 644


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,941,525
Number of Sequences: 219361
Number of extensions: 1524650
Number of successful extensions: 5552
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5537
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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