ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9f15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48) 30 6.4
2PGK_METTH (O27121) Phosphoglycerate kinase (EC 2.7.2.3) 29 8.3

>POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1748

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 56   TLNSKTGCTFSKPSRIHASHAASMVQP 136
            T++S  GCTFS P+ IH     +++ P
Sbjct: 1059 TISSSQGCTFSDPAFIHLDRNTALLSP 1085



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>PGK_METTH (O27121) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 411

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 544 RKMLPLLMPVTGQLFQASHSQQLTLTGAMLQVKQQAARNLPRLL 413
           RK+ PLL       F A+H  Q +L G  L+V   A R + R L
Sbjct: 146 RKLAPLLDYFINDAFAAAHRSQPSLVGFALRVPSAAGRVMEREL 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,228,527
Number of Sequences: 219361
Number of extensions: 1350092
Number of successful extensions: 3780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3780
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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