ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9f15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 9e-12
2dbj|AK067829.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 9e-12
3ref|NM_188328.1| Oryza sativa (japonica cultivar-group), Ozsa807... 76 1e-10
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
6dbj|AK101572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
7gb|CP000221.1| Drosophila melanogaster genomic scaffold 21100002... 46 0.13
8gb|AC146382.4| Pan troglodytes BAC clone RP43-112E23 from 7, com... 42 2.0
9gb|AC146370.3| Pan troglodytes BAC clone RP43-58J3 from 7, compl... 42 2.0
10gb|AC144510.1| Pan troglodytes BAC clone RP43-18C13 from 7, comp... 42 2.0
11gb|BC014230.2| Homo sapiens cDNA clone IMAGE:4544942, partial cds 42 2.0
12gb|BC003524.1|BC003524 Homo sapiens, clone IMAGE:3607242, mRNA, ... 42 2.0
13gb|AC137741.5| Homo sapiens chromosome 8, clone CTD-2059D3, comp... 42 2.0
14gb|AC068418.5| Homo sapiens chromosome 17, clone RP11-728E14, co... 42 2.0
15gb|AC087294.18| Homo sapiens chromosome 17, clone RP11-64J19, co... 42 2.0
16gb|AC069181.9| Homo sapiens chromosome 8, clone RP11-200A24, com... 42 2.0
17dbj|AP006543.1| Homo sapiens genomic DNA, chromosome 8p12, clone... 42 2.0
18dbj|AP006183.1| Homo sapiens genomic DNA, chromosome 8p12, clone... 42 2.0
19gb|AC004091.1|AC004091 Human Cosmid g1248a098 from 7q31.3, compl... 42 2.0
20emb|CT025592.14| Mouse DNA sequence from clone RP23-431J17 on ch... 42 2.0
21gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete... 40 7.8
22gb|AY679117.1| Plasmodium falciparum isolate 732 erythrocyte mem... 40 7.8
23gb|AC125207.5| Mus musculus BAC clone RP23-220C16 from 8, comple... 40 7.8
24gb|AC128660.31| Medicago truncatula clone mth2-14p23, complete s... 40 7.8
25gb|AC135103.17| Medicago truncatula clone mth2-11l2, complete se... 40 7.8
26emb|AL449403.11| Human DNA sequence from clone RP11-569G13 on ch... 40 7.8
27gb|AC022144.8| Homo sapiens chromosome 19 clone CTD-2540F13, com... 40 7.8
28gb|AC008543.9| Homo sapiens chromosome 19 clone CTC-499B15, comp... 40 7.8
29gb|AC106880.4| Homo sapiens BAC clone RP11-709E23 from 4, comple... 40 7.8
30gb|AE003637.3| Drosophila melanogaster chromosome 2L, section 46... 40 7.8
31gb|AC006470.1|AC006470 Drosophila melanogaster, chromosome 2R, r... 40 7.8
32gb|L42244.1|PFAVAR Plasmodium falciparum clone A4 variant surfac... 40 7.8
33emb|AL929234.9| Mouse DNA sequence from clone RP24-225K18 on chr... 40 7.8
34gb|CP000188.1| Drosophila melanogaster genomic scaffold 21100002... 40 7.8
35gb|AC123868.4| Mus musculus BAC clone RP23-129K6 from 8, complet... 40 7.8
36gb|U18427.1|DVU18427 Dengue virus type 4 El Salvador 1994 polypr... 40 7.8
37dbj|AB047640.1| Hepatitis C virus gene for polyprotein, complete... 40 7.8 
>dbj|AK101188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030D20, full
            insert sequence
          Length = 2212

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 164/204 (80%), Gaps = 6/204 (2%)
 Strand = Plus / Minus

                                                                        
Query: 366  ttataccttcttgaagaatgacattatgttctttccttgcttgggggcagcagccttggc 425
            |||||||||||||||||||||||| |||||    ||||||||||   ||||   ||||||
Sbjct: 1692 ttataccttcttgaagaatgacataatgttg---ccttgcttggttccagc---cttggc 1639

                                                                        
Query: 426  aggtttcttgctgcctgctgttttacttggagcattgctcctgtcagtgttaactgctgg 485
            |||||||||| |||| ||||||||||| | |||||||||  | || || ||  || ||||
Sbjct: 1638 aggtttcttgttgccggctgttttactcgaagcattgcttttttcggtctttgctactgg 1579

                                                                        
Query: 486  ctgtggcttgcttggaagagttggcctgttactggcatcagtagtggtaacatttttctc 545
            ||| ||||||||||  ||||||| ||||||    ||| |||||  | | ||||| |||||
Sbjct: 1578 ctgcggcttgcttgagagagttgccctgtttgcagcaccagtatcgctcacattcttctc 1519

                                    
Query: 546  tgccttatcacttgcaggagcttc 569
             |||||||||| ||||| ||||||
Sbjct: 1518 agccttatcacctgcagaagcttc 1495
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>dbj|AK067829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121A07, full
            insert sequence
          Length = 2641

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 164/204 (80%), Gaps = 6/204 (2%)
 Strand = Plus / Minus

                                                                        
Query: 366  ttataccttcttgaagaatgacattatgttctttccttgcttgggggcagcagccttggc 425
            |||||||||||||||||||||||| |||||    ||||||||||   ||||   ||||||
Sbjct: 2122 ttataccttcttgaagaatgacataatgttg---ccttgcttggttccagc---cttggc 2069

                                                                        
Query: 426  aggtttcttgctgcctgctgttttacttggagcattgctcctgtcagtgttaactgctgg 485
            |||||||||| |||| ||||||||||| | |||||||||  | || || ||  || ||||
Sbjct: 2068 aggtttcttgttgccggctgttttactcgaagcattgcttttttcggtctttgctactgg 2009

                                                                        
Query: 486  ctgtggcttgcttggaagagttggcctgttactggcatcagtagtggtaacatttttctc 545
            ||| ||||||||||  ||||||| ||||||    ||| |||||  | | ||||| |||||
Sbjct: 2008 ctgcggcttgcttgagagagttgccctgtttgcagcaccagtatcgctcacattcttctc 1949

                                    
Query: 546  tgccttatcacttgcaggagcttc 569
             |||||||||| ||||| ||||||
Sbjct: 1948 agccttatcacctgcagaagcttc 1925
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>ref|NM_188328.1| Oryza sativa (japonica cultivar-group), Ozsa8079 predicted mRNA
          Length = 2127

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 125/154 (81%)
 Strand = Plus / Minus

                                                                        
Query: 416  cagccttggcaggtttcttgctgcctgctgttttacttggagcattgctcctgtcagtgt 475
            |||||||||||||||||||| |||| ||||||||||| | |||||||||  | || || |
Sbjct: 1777 cagccttggcaggtttcttgttgccggctgttttactcgaagcattgcttttttcggtct 1718

                                                                        
Query: 476  taactgctggctgtggcttgcttggaagagttggcctgttactggcatcagtagtggtaa 535
            |  || ||||||| ||||||||||  ||||||| ||||||    ||| |||||  | | |
Sbjct: 1717 ttgctactggctgcggcttgcttgagagagttgccctgtttgcagcaccagtatcgctca 1658

                                              
Query: 536  catttttctctgccttatcacttgcaggagcttc 569
            |||| ||||| |||||||||| ||||| ||||||
Sbjct: 1657 cattcttctcagccttatcacctgcagaagcttc 1624
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 121/148 (81%), Gaps = 6/148 (4%)
 Strand = Plus / Plus

                                                                           
Query: 366     ttataccttcttgaagaatgacattatgttctttccttgcttgggggcagcagccttggc 425
               |||||||||||||||||||||||| |||||    ||||||||||   ||||   ||||||
Sbjct: 5718421 ttataccttcttgaagaatgacataatgttg---ccttgcttggttccagc---cttggc 5718474

                                                                           
Query: 426     aggtttcttgctgcctgctgttttacttggagcattgctcctgtcagtgttaactgctgg 485
               |||||||||| |||| ||||||||||| | |||||||||  | || || ||  || ||||
Sbjct: 5718475 aggtttcttgttgccggctgttttactcgaagcattgcttttttcggtctttgctactgg 5718534

                                           
Query: 486     ctgtggcttgcttggaagagttggcctg 513
               ||| ||||||||||  ||||||| ||||
Sbjct: 5718535 ctgcggcttgcttgagagagttgccctg 5718562
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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451C06
          Length = 151773

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 121/148 (81%), Gaps = 6/148 (4%)
 Strand = Plus / Plus

                                                                         
Query: 366   ttataccttcttgaagaatgacattatgttctttccttgcttgggggcagcagccttggc 425
             |||||||||||||||||||||||| |||||    ||||||||||   ||||   ||||||
Sbjct: 43123 ttataccttcttgaagaatgacataatgttg---ccttgcttggttccagc---cttggc 43176

                                                                         
Query: 426   aggtttcttgctgcctgctgttttacttggagcattgctcctgtcagtgttaactgctgg 485
             |||||||||| |||| ||||||||||| | |||||||||  | || || ||  || ||||
Sbjct: 43177 aggtttcttgttgccggctgttttactcgaagcattgcttttttcggtctttgctactgg 43236

                                         
Query: 486   ctgtggcttgcttggaagagttggcctg 513
             ||| ||||||||||  ||||||| ||||
Sbjct: 43237 ctgcggcttgcttgagagagttgccctg 43264
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>dbj|AK101572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050J10, full
            insert sequence
          Length = 2205

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 163/204 (79%), Gaps = 6/204 (2%)
 Strand = Plus / Minus

                                                                        
Query: 366  ttataccttcttgaagaatgacattatgttctttccttgcttgggggcagcagccttggc 425
            |||||||||||||||||||||||| |||   || ||||||||||   | |   |||||||
Sbjct: 1685 ttataccttcttgaagaatgacataatg---ttgccttgcttggttccgg---ccttggc 1632

                                                                        
Query: 426  aggtttcttgctgcctgctgttttacttggagcattgctcctgtcagtgttaactgctgg 485
            |||||||||| |||| ||||||||||| | |||||||||  | || || ||  || ||||
Sbjct: 1631 aggtttcttgttgccggctgttttactcgaagcattgcttttttcggtctttgctactgg 1572

                                                                        
Query: 486  ctgtggcttgcttggaagagttggcctgttactggcatcagtagtggtaacatttttctc 545
            ||| ||||||||||  ||||||| ||||||    ||| |||||  | | ||||| |||||
Sbjct: 1571 ctgcggcttgcttgagagagttgccctgtttgcagcaccagtatcgctcacattcttctc 1512

                                    
Query: 546  tgccttatcacttgcaggagcttc 569
             |||||||||| ||||| ||||||
Sbjct: 1511 agccttatcacctgcagaagcttc 1488
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>gb|CP000221.1| Drosophila melanogaster genomic scaffold 211000022280740
          Length = 552562

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 179    ctagtacaacacaaaatgctacaggtt 205
              |||||||| ||||||||||||||||||
Sbjct: 232994 ctagtacatcacaaaatgctacaggtt 233020
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>gb|AC146382.4| Pan troglodytes BAC clone RP43-112E23 from 7, complete sequence
          Length = 181957

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 379   aagaatgacattatgttcttt 399
             |||||||||||||||||||||
Sbjct: 82835 aagaatgacattatgttcttt 82855
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>gb|AC146370.3| Pan troglodytes BAC clone RP43-58J3 from 7, complete sequence
          Length = 80817

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 379  aagaatgacattatgttcttt 399
            |||||||||||||||||||||
Sbjct: 6332 aagaatgacattatgttcttt 6312
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>gb|AC144510.1| Pan troglodytes BAC clone RP43-18C13 from 7, complete sequence
          Length = 161048

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 379  aagaatgacattatgttcttt 399
            |||||||||||||||||||||
Sbjct: 3859 aagaatgacattatgttcttt 3879
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>gb|BC014230.2| Homo sapiens cDNA clone IMAGE:4544942, partial cds
          Length = 1413

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 480  tgctggctgtggcttgcttgg 500
            |||||||||||||||||||||
Sbjct: 1186 tgctggctgtggcttgcttgg 1206
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>gb|BC003524.1|BC003524 Homo sapiens, clone IMAGE:3607242, mRNA, partial cds
          Length = 1414

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 480  tgctggctgtggcttgcttgg 500
            |||||||||||||||||||||
Sbjct: 1186 tgctggctgtggcttgcttgg 1206
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>gb|AC137741.5| Homo sapiens chromosome 8, clone CTD-2059D3, complete sequence
          Length = 117100

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 480   tgctggctgtggcttgcttgg 500
             |||||||||||||||||||||
Sbjct: 62602 tgctggctgtggcttgcttgg 62622
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>gb|AC068418.5| Homo sapiens chromosome 17, clone RP11-728E14, complete sequence
          Length = 202992

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 434   tgctgcctgctgttttacttggagc 458
             ||||||||||||||| |||||||||
Sbjct: 43251 tgctgcctgctgtttgacttggagc 43227
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>gb|AC087294.18| Homo sapiens chromosome 17, clone RP11-64J19, complete sequence
          Length = 177017

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 434   tgctgcctgctgttttacttggagc 458
             ||||||||||||||| |||||||||
Sbjct: 29175 tgctgcctgctgtttgacttggagc 29199
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>gb|AC069181.9| Homo sapiens chromosome 8, clone RP11-200A24, complete sequence
          Length = 139409

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 480    tgctggctgtggcttgcttgg 500
              |||||||||||||||||||||
Sbjct: 138449 tgctggctgtggcttgcttgg 138429
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>dbj|AP006543.1| Homo sapiens genomic DNA, chromosome 8p12, clone: KB1250F11, complete
            sequence
          Length = 98657

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 480  tgctggctgtggcttgcttgg 500
            |||||||||||||||||||||
Sbjct: 9879 tgctggctgtggcttgcttgg 9859
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>dbj|AP006183.1| Homo sapiens genomic DNA, chromosome 8p12, clone: KB1169H7, complete
              sequence
          Length = 158699

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 480    tgctggctgtggcttgcttgg 500
              |||||||||||||||||||||
Sbjct: 133724 tgctggctgtggcttgcttgg 133704
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>gb|AC004091.1|AC004091 Human Cosmid g1248a098 from 7q31.3, complete sequence
          Length = 39329

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 379   aagaatgacattatgttcttt 399
             |||||||||||||||||||||
Sbjct: 18288 aagaatgacattatgttcttt 18308
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>emb|CT025592.14| Mouse DNA sequence from clone RP23-431J17 on chromosome 16, complete
             sequence
          Length = 215987

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 438   gcctgctgttttacttggagcattg 462
             ||||||||||| |||||||||||||
Sbjct: 98981 gcctgctgtttaacttggagcattg 98957
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>gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete sequence
          Length = 186444

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      gtgcgtgtacagagaaagac 28
              ||||||||||||||||||||
Sbjct: 116502 gtgcgtgtacagagaaagac 116521
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>gb|AY679117.1| Plasmodium falciparum isolate 732 erythrocyte membrane protein 1
            varPAM gene, partial cds
          Length = 6630

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 533  taacatttttctctgccttatcac 556
            ||||||||||||||||||| ||||
Sbjct: 4063 taacatttttctctgccttttcac 4040
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>gb|AC125207.5| Mus musculus BAC clone RP23-220C16 from 8, complete sequence
          Length = 189936

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 428   gtttcttgctgcctgctgttttacttgg 455
             ||||||| |||||||||||||| |||||
Sbjct: 17380 gtttcttcctgcctgctgtttttcttgg 17353
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>gb|AC128660.31| Medicago truncatula clone mth2-14p23, complete sequence
          Length = 99170

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tttgatccatcaatggcttc 338
             ||||||||||||||||||||
Sbjct: 98140 tttgatccatcaatggcttc 98159



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tttgatccatcaatggcttc 338
             ||||||||||||||||||||
Sbjct: 89323 tttgatccatcaatggcttc 89342



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tttgatccatcaatggcttc 338
             ||||||||||||||||||||
Sbjct: 80505 tttgatccatcaatggcttc 80524



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tttgatccatcaatggcttc 338
             ||||||||||||||||||||
Sbjct: 71668 tttgatccatcaatggcttc 71687
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>gb|AC135103.17| Medicago truncatula clone mth2-11l2, complete sequence
          Length = 99399

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   gaagaagaaaccaacaccaa 175
             ||||||||||||||||||||
Sbjct: 31234 gaagaagaaaccaacaccaa 31215
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>emb|AL449403.11| Human DNA sequence from clone RP11-569G13 on chromosome 9 Contains a
              eukaryotic translation initiation factor 4B (EIF4B)
              pseudogene and part of a novel gene, complete sequence
          Length = 173916

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 401    cttgcttgggggcagcagccttgg 424
              ||||||||||| ||||||||||||
Sbjct: 149028 cttgcttggggccagcagccttgg 149051
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>gb|AC022144.8| Homo sapiens chromosome 19 clone CTD-2540F13, complete sequence
          Length = 149271

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   ttcatgccagccacgcagca 121
             ||||||||||||||||||||
Sbjct: 80007 ttcatgccagccacgcagca 79988
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>gb|AC008543.9| Homo sapiens chromosome 19 clone CTC-499B15, complete sequence
          Length = 231247

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 533    taacatttttctctgcctta 552
              ||||||||||||||||||||
Sbjct: 136009 taacatttttctctgcctta 136028
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>gb|AC106880.4| Homo sapiens BAC clone RP11-709E23 from 4, complete sequence
          Length = 67361

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    acactctgaattctaaaaca 73
             ||||||||||||||||||||
Sbjct: 33840 acactctgaattctaaaaca 33821
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>gb|AE003637.3| Drosophila melanogaster chromosome 2L, section 46 of 83 of the
            complete sequence
          Length = 222787

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    gtgcgtgtacagagaaagac 28
            ||||||||||||||||||||
Sbjct: 4931 gtgcgtgtacagagaaagac 4950
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>gb|AC006470.1|AC006470 Drosophila melanogaster, chromosome 2R, region 33F1-33F2, P1 clones
             DS06792 and DS03749, complete sequence
          Length = 112972

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     gtgcgtgtacagagaaagac 28
             ||||||||||||||||||||
Sbjct: 70185 gtgcgtgtacagagaaagac 70204
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>gb|L42244.1|PFAVAR Plasmodium falciparum clone A4 variant surface protein (var) gene,
            partial cds
          Length = 10347

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 533  taacatttttctctgccttatcac 556
            ||||||||||||||||||| ||||
Sbjct: 7487 taacatttttctctgccttttcac 7464
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>emb|AL929234.9| Mouse DNA sequence from clone RP24-225K18 on chromosome 11, complete
             sequence
          Length = 168500

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   atattcaggcagagccagtt 284
             ||||||||||||||||||||
Sbjct: 28010 atattcaggcagagccagtt 27991
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>gb|CP000188.1| Drosophila melanogaster genomic scaffold 211000022279977
          Length = 252652

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 179    ctagtacaacacaaaatgctacag 202
              |||||||| |||||||||||||||
Sbjct: 123029 ctagtacatcacaaaatgctacag 123052
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>gb|AC123868.4| Mus musculus BAC clone RP23-129K6 from 8, complete sequence
          Length = 174224

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 428    gtttcttgctgcctgctgttttacttgg 455
              ||||||| |||||||||||||| |||||
Sbjct: 160613 gtttcttcctgcctgctgtttttcttgg 160586
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>gb|U18427.1|DVU18427 Dengue virus type 4 El Salvador 1994 polyprotein gene, partial cds
          Length = 1637

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 483 tggctgtggcttgcttggaa 502
           ||||||||||||||||||||
Sbjct: 461 tggctgtggcttgcttggaa 480
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>dbj|AB047640.1| Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1
          Length = 9674

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 219  gctacgacgcacgagctgcttggt 242
            ||||||||||| ||||||||||||
Sbjct: 4911 gctacgacgcaggagctgcttggt 4934


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,644,440
Number of Sequences: 3902068
Number of extensions: 5644440
Number of successful extensions: 106820
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106714
Number of HSP's gapped (non-prelim): 106
length of query: 572
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 549
effective length of database: 17,143,297,704
effective search space: 9411670439496
effective search space used: 9411670439496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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