ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
2dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
3dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
4dbj|AK105489.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
5ref|XM_479287.1| Oryza sativa (japonica cultivar-group), mRNA 260 6e-66
6ref|NM_112063.2| Arabidopsis thaliana methyltransferase AT3G1227... 48 0.040
7gb|AC069472.1|AC069472 Arabidopsis thaliana chromosome 3 BAC F28... 48 0.040
8dbj|AP002047.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 48 0.040
9gb|AC102656.28| Mus musculus chromosome 5, clone RP23-15G1, comp... 44 0.63
10gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete... 44 0.63
11gb|AC010922.10| Drosophila melanogaster clone BACR09H01, complet... 44 0.63
12gb|AC161536.7| Mus musculus chromosome 5, clone RP23-340A18, com... 44 0.63
13emb|AL031257.1|HS796I11 Human DNA sequence from clone RP4-796I11... 44 0.63
14gb|DP000036.1| Papio anubis target 106 genomic scaffold 44 0.63
15gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 ... 44 0.63
16gb|AC167364.3| Mus musculus BAC clone RP23-41J3 from chromosome ... 42 2.5
17gb|AC167360.3| Mus musculus BAC clone RP24-174G8 from chromosome... 42 2.5
18gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5
19gb|AC166371.4| Mus musculus BAC clone CH25-488C17 from chromosom... 42 2.5
20gb|AC126030.3| Mus musculus BAC clone RP23-452N11 from chromosom... 42 2.5
21emb|AL034348.5|HS84D21 Human DNA sequence from clone RP1-84D21 o... 42 2.5
22gb|AC094527.7| Rattus norvegicus 5 BAC CH230-4L11 (Children's Ho... 42 2.5
23dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 42 2.5
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
25gb|AC138123.2| Homo sapiens 12 BAC RP11-202G11 (Roswell Park Can... 42 2.5
26dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
27ref|NM_188517.1| Oryza sativa (japonica cultivar-group), Ozsa818... 40 9.8
28gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 9.8
29gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 9.8
30gb|AE017139.1| Yersinia pestis biovar Medievalis str. 91001 sect... 40 9.8
31gb|AC115063.8| Mus musculus chromosome 1, clone RP24-400H18, com... 40 9.8
32gb|AC183529.4| Pan troglodytes BAC clone CH251-669H19 from chrom... 40 9.8
33gb|AE009952.1| Yersinia pestis KIM, complete genome 40 9.8
34ref|XM_838306.1| Leishmania major strain Friedlin hypothetical p... 40 9.8
35gb|DP000038.2| Colobus guereza target 106 genomic scaffold 40 9.8
36gb|AC117599.14| Mus musculus chromosome 1, clone RP23-426D21, co... 40 9.8
37emb|Z93016.2|HS211D12 Human DNA sequence from clone RP1-211D12 o... 40 9.8
38emb|Z97055.1|HS388M5 Human DNA sequence from clone RP3-388M5 on ... 40 9.8
39gb|AC117481.8| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Canc... 40 9.8
40emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 40 9.8
41emb|AJ414160.1| Yersinia pestis strain CO92 complete genome; seg... 40 9.8
42gb|AC113188.6| Homo sapiens chromosome 8, clone CTD-2546M19, com... 40 9.8
43gb|AC117401.3| Homo sapiens 3 BAC RP11-521J5 (Roswell Park Cance... 40 9.8
44gb|AC004943.2| Homo sapiens PAC clone RP5-991G20 from 16, comple... 40 9.8
45gb|AC183102.3| Pan troglodytes BAC clone CH251-717M1 from chromo... 40 9.8
46gb|AC109823.4| Homo sapiens BAC clone RP11-663M18 from 4, comple... 40 9.8
47gb|BC016638.1|BC016638 Homo sapiens, clone IMAGE:4384966, mRNA 40 9.8
48gb|DP000037.1| Pan troglodytes target 106 genomic scaffold 40 9.8
49gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold 40 9.8
50gb|DP000043.1| Macaca mulatta target 106 genomic scaffold 40 9.8
51gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold 40 9.8
52gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold 40 9.8
53gb|AC016355.8| Homo sapiens chromosome 15, clone RP11-502I4, com... 40 9.8
54dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
55gb|AF042089.1|AF042089 Homo sapiens chromosome 3, olfactory rece... 40 9.8
56dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
57gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete seq... 40 9.8
58gb|L43496.1|XELLIGI Xenopus laevis ligase I (ligI) mRNA, complet... 40 9.8
59dbj|AP004291.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.8
60dbj|AB040883.1| Homo sapiens mRNA for KIAA1450 protein, partial cds 40 9.8 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  262 bits (132), Expect = 1e-66
 Identities = 273/320 (85%)
 Strand = Plus / Minus

                                                                            
Query: 394      gctcaaagattgaagatctgagctggccagctgcgcttccggccatctgagctgaccccc 453
                ||||| || |||||||||||| | |||||||| ||||||| ||||||||||||||  || 
Sbjct: 26583239 gctcacaggttgaagatctgaacaggccagctacgcttcctgccatctgagctgattcct 26583180

                                                                            
Query: 454      gtggtttcgatcgatatgtctatgctgcggtgctcggaggccctcacgatgctgatgcgg 513
                || ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 26583179 gtagtttcaatcgatatgtctatgctgcggtgctcagaggccctcacaatgctgatgcgg 26583120

                                                                            
Query: 514      gacctgatcgtcacagctgggcattcagccgtgccaatagatgccgatgagccaacgacc 573
                || |||||| ||||||||||||| ||| | |||||||  || || |||||| ||||| | 
Sbjct: 26583119 gatctgatcatcacagctgggcactcatctgtgccaactgacgcagatgagacaacggct 26583060

                                                                            
Query: 574      gacccatcctttaccatcgcgatgggctcttcgaaggtgaagattgtctgcgaccagtga 633
                ||  | |||||| |||| |||||||||||||| ||||||||||| || || |||||||||
Sbjct: 26583059 gattcctcctttgccattgcgatgggctcttcaaaggtgaagatagtttgagaccagtga 26583000

                                                                            
Query: 634      gttggcgtggagaaaggagaggtggagaggaccacgggcttgtccttgcagaacctgctg 693
                || || ||||||||||||||||||||||||   || ||||| ||||||||||| | | | 
Sbjct: 26582999 gtcggtgtggagaaaggagaggtggagaggttgactggcttctccttgcagaatcggttc 26582940

                                    
Query: 694      gtgaagcccgtgtcaaacca 713
                || ||||| |||||||||||
Sbjct: 26582939 gtaaagccagtgtcaaacca 26582920



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 640      gtggagaaaggagaggtggag 660
                |||||||||||||||||||||
Sbjct: 23431734 gtggagaaaggagaggtggag 23431714
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>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1340_C08
          Length = 192167

 Score =  262 bits (132), Expect = 1e-66
 Identities = 273/320 (85%)
 Strand = Plus / Minus

                                                                          
Query: 394    gctcaaagattgaagatctgagctggccagctgcgcttccggccatctgagctgaccccc 453
              ||||| || |||||||||||| | |||||||| ||||||| ||||||||||||||  || 
Sbjct: 128510 gctcacaggttgaagatctgaacaggccagctacgcttcctgccatctgagctgattcct 128451

                                                                          
Query: 454    gtggtttcgatcgatatgtctatgctgcggtgctcggaggccctcacgatgctgatgcgg 513
              || ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 128450 gtagtttcaatcgatatgtctatgctgcggtgctcagaggccctcacaatgctgatgcgg 128391

                                                                          
Query: 514    gacctgatcgtcacagctgggcattcagccgtgccaatagatgccgatgagccaacgacc 573
              || |||||| ||||||||||||| ||| | |||||||  || || |||||| ||||| | 
Sbjct: 128390 gatctgatcatcacagctgggcactcatctgtgccaactgacgcagatgagacaacggct 128331

                                                                          
Query: 574    gacccatcctttaccatcgcgatgggctcttcgaaggtgaagattgtctgcgaccagtga 633
              ||  | |||||| |||| |||||||||||||| ||||||||||| || || |||||||||
Sbjct: 128330 gattcctcctttgccattgcgatgggctcttcaaaggtgaagatagtttgagaccagtga 128271

                                                                          
Query: 634    gttggcgtggagaaaggagaggtggagaggaccacgggcttgtccttgcagaacctgctg 693
              || || ||||||||||||||||||||||||   || ||||| ||||||||||| | | | 
Sbjct: 128270 gtcggtgtggagaaaggagaggtggagaggttgactggcttctccttgcagaatcggttc 128211

                                  
Query: 694    gtgaagcccgtgtcaaacca 713
              || ||||| |||||||||||
Sbjct: 128210 gtaaagccagtgtcaaacca 128191
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>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
           PAC clone:P0524G08
          Length = 146690

 Score =  262 bits (132), Expect = 1e-66
 Identities = 273/320 (85%)
 Strand = Plus / Minus

                                                                       
Query: 394 gctcaaagattgaagatctgagctggccagctgcgcttccggccatctgagctgaccccc 453
           ||||| || |||||||||||| | |||||||| ||||||| ||||||||||||||  || 
Sbjct: 843 gctcacaggttgaagatctgaacaggccagctacgcttcctgccatctgagctgattcct 784

                                                                       
Query: 454 gtggtttcgatcgatatgtctatgctgcggtgctcggaggccctcacgatgctgatgcgg 513
           || ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 783 gtagtttcaatcgatatgtctatgctgcggtgctcagaggccctcacaatgctgatgcgg 724

                                                                       
Query: 514 gacctgatcgtcacagctgggcattcagccgtgccaatagatgccgatgagccaacgacc 573
           || |||||| ||||||||||||| ||| | |||||||  || || |||||| ||||| | 
Sbjct: 723 gatctgatcatcacagctgggcactcatctgtgccaactgacgcagatgagacaacggct 664

                                                                       
Query: 574 gacccatcctttaccatcgcgatgggctcttcgaaggtgaagattgtctgcgaccagtga 633
           ||  | |||||| |||| |||||||||||||| ||||||||||| || || |||||||||
Sbjct: 663 gattcctcctttgccattgcgatgggctcttcaaaggtgaagatagtttgagaccagtga 604

                                                                       
Query: 634 gttggcgtggagaaaggagaggtggagaggaccacgggcttgtccttgcagaacctgctg 693
           || || ||||||||||||||||||||||||   || ||||| ||||||||||| | | | 
Sbjct: 603 gtcggtgtggagaaaggagaggtggagaggttgactggcttctccttgcagaatcggttc 544

                               
Query: 694 gtgaagcccgtgtcaaacca 713
           || ||||| |||||||||||
Sbjct: 543 gtaaagccagtgtcaaacca 524
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>dbj|AK105489.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B11, full
            insert sequence
          Length = 1640

 Score =  262 bits (132), Expect = 1e-66
 Identities = 273/320 (85%)
 Strand = Plus / Minus

                                                                        
Query: 394  gctcaaagattgaagatctgagctggccagctgcgcttccggccatctgagctgaccccc 453
            ||||| || |||||||||||| | |||||||| ||||||| ||||||||||||||  || 
Sbjct: 1218 gctcacaggttgaagatctgaacaggccagctacgcttcctgccatctgagctgattcct 1159

                                                                        
Query: 454  gtggtttcgatcgatatgtctatgctgcggtgctcggaggccctcacgatgctgatgcgg 513
            || ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 1158 gtagtttcaatcgatatgtctatgctgcggtgctcagaggccctcacaatgctgatgcgg 1099

                                                                        
Query: 514  gacctgatcgtcacagctgggcattcagccgtgccaatagatgccgatgagccaacgacc 573
            || |||||| ||||||||||||| ||| | |||||||  || || |||||| ||||| | 
Sbjct: 1098 gatctgatcatcacagctgggcactcatctgtgccaactgacgcagatgagacaacggct 1039

                                                                        
Query: 574  gacccatcctttaccatcgcgatgggctcttcgaaggtgaagattgtctgcgaccagtga 633
            ||  | |||||| |||| |||||||||||||| ||||||||||| || || |||||||||
Sbjct: 1038 gattcctcctttgccattgcgatgggctcttcaaaggtgaagatagtttgagaccagtga 979

                                                                        
Query: 634  gttggcgtggagaaaggagaggtggagaggaccacgggcttgtccttgcagaacctgctg 693
            || || ||||||||||||||||||||||||   || ||||| ||||||||||| | | | 
Sbjct: 978  gtcggtgtggagaaaggagaggtggagaggttgactggcttctccttgcagaatcggttc 919

                                
Query: 694  gtgaagcccgtgtcaaacca 713
            || ||||| |||||||||||
Sbjct: 918  gtaaagccagtgtcaaacca 899
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>ref|XM_479287.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1863

 Score =  260 bits (131), Expect = 6e-66
 Identities = 266/311 (85%)
 Strand = Plus / Minus

                                                                        
Query: 403  ttgaagatctgagctggccagctgcgcttccggccatctgagctgacccccgtggtttcg 462
            |||||||||||| | |||||||| ||||||| ||||||||||||||  || || ||||| 
Sbjct: 1856 ttgaagatctgaacaggccagctacgcttcctgccatctgagctgattcctgtagtttca 1797

                                                                        
Query: 463  atcgatatgtctatgctgcggtgctcggaggccctcacgatgctgatgcgggacctgatc 522
            |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1796 atcgatatgtctatgctgcggtgctcagaggccctcacaatgctgatgcgggatctgatc 1737

                                                                        
Query: 523  gtcacagctgggcattcagccgtgccaatagatgccgatgagccaacgaccgacccatcc 582
             ||||||||||||| ||| | |||||||  || || |||||| ||||| | ||  | |||
Sbjct: 1736 atcacagctgggcactcatctgtgccaactgacgcagatgagacaacggctgattcctcc 1677

                                                                        
Query: 583  tttaccatcgcgatgggctcttcgaaggtgaagattgtctgcgaccagtgagttggcgtg 642
            ||| |||| |||||||||||||| ||||||||||| || || ||||||||||| || |||
Sbjct: 1676 tttgccattgcgatgggctcttcaaaggtgaagatagtttgagaccagtgagtcggtgtg 1617

                                                                        
Query: 643  gagaaaggagaggtggagaggaccacgggcttgtccttgcagaacctgctggtgaagccc 702
            |||||||||||||||||||||   || ||||| ||||||||||| | | | || ||||| 
Sbjct: 1616 gagaaaggagaggtggagaggttgactggcttctccttgcagaatcggttcgtaaagcca 1557

                       
Query: 703  gtgtcaaacca 713
            |||||||||||
Sbjct: 1556 gtgtcaaacca 1546
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>ref|NM_112063.2| Arabidopsis thaliana methyltransferase AT3G12270 mRNA, complete cds
          Length = 1905

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 676  tccttgcagaacctgctggtgaagcccgtgtcaaaccaca 715
            ||||| |||||||| |||||||| || |||||||||||||
Sbjct: 1487 tccttacagaacctactggtgaaacctgtgtcaaaccaca 1448
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>gb|AC069472.1|AC069472 Arabidopsis thaliana chromosome 3 BAC F28J15 genomic sequence, complete
             sequence
          Length = 52211

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 676   tccttgcagaacctgctggtgaagcccgtgtcaaaccaca 715
             ||||| |||||||| |||||||| || |||||||||||||
Sbjct: 37517 tccttacagaacctactggtgaaacctgtgtcaaaccaca 37478
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>dbj|AP002047.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC3
          Length = 86536

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 676   tccttgcagaacctgctggtgaagcccgtgtcaaaccaca 715
             ||||| |||||||| |||||||| || |||||||||||||
Sbjct: 26507 tccttacagaacctactggtgaaacctgtgtcaaaccaca 26468
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>gb|AC102656.28| Mus musculus chromosome 5, clone RP23-15G1, complete sequence
          Length = 227533

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 641    tggagaaaggagaggtggagag 662
              ||||||||||||||||||||||
Sbjct: 205626 tggagaaaggagaggtggagag 205647
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>gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete sequence
          Length = 179077

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 394   gctcaaagattgaagatctgagctgg 419
             |||||||||| |||||||||||||||
Sbjct: 36198 gctcaaagatggaagatctgagctgg 36173
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>gb|AC010922.10| Drosophila melanogaster clone BACR09H01, complete sequence
          Length = 152607

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 394    gctcaaagattgaagatctgagctgg 419
              |||||||||| |||||||||||||||
Sbjct: 133739 gctcaaagatggaagatctgagctgg 133714
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>gb|AC161536.7| Mus musculus chromosome 5, clone RP23-340A18, complete sequence
          Length = 218835

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 641    tggagaaaggagaggtggagag 662
              ||||||||||||||||||||||
Sbjct: 111057 tggagaaaggagaggtggagag 111036
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>emb|AL031257.1|HS796I11 Human DNA sequence from clone RP4-796I11 on chromosome 20q12 Contains
             the 5' end of the TIX1 gene for triple homeobox 1 and a
             CpG island, complete sequence
          Length = 77402

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 155   tcatttcacaggtacacacatc 176
             ||||||||||||||||||||||
Sbjct: 76887 tcatttcacaggtacacacatc 76908
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>gb|DP000036.1| Papio anubis target 106 genomic scaffold
          Length = 492848

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 75     ctgagaagaggaaaaatttcca 96
              ||||||||||||||||||||||
Sbjct: 470506 ctgagaagaggaaaaatttcca 470485



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tattgtactgctactgagaa 81
             ||||||||||||||||||||
Sbjct: 88955 tattgtactgctactgagaa 88974
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>gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 of 74 of the complete
              sequence
          Length = 300468

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 394    gctcaaagattgaagatctgagctgg 419
              |||||||||| |||||||||||||||
Sbjct: 295827 gctcaaagatggaagatctgagctgg 295852
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>gb|AC167364.3| Mus musculus BAC clone RP23-41J3 from chromosome 12, complete sequence
          Length = 204336

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 297    aatccaccaaaagataagaag 317
              |||||||||||||||||||||
Sbjct: 146369 aatccaccaaaagataagaag 146349
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>gb|AC167360.3| Mus musculus BAC clone RP24-174G8 from chromosome 12, complete sequence
          Length = 171120

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 297   aatccaccaaaagataagaag 317
             |||||||||||||||||||||
Sbjct: 71703 aatccaccaaaagataagaag 71683
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>gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1122_B08,
              complete sequence
          Length = 143955

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 385    cagatcatcgctcaaagattgaaga 409
              |||| ||||||||||||||||||||
Sbjct: 107351 cagagcatcgctcaaagattgaaga 107327
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>gb|AC166371.4| Mus musculus BAC clone CH25-488C17 from chromosome 12, complete
             sequence
          Length = 117908

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 297   aatccaccaaaagataagaag 317
             |||||||||||||||||||||
Sbjct: 26611 aatccaccaaaagataagaag 26591
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>gb|AC126030.3| Mus musculus BAC clone RP23-452N11 from chromosome 16, complete sequence
          Length = 187505

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 640    gtggagaaaggagaggtggagagga 664
              ||||||||||| |||||||||||||
Sbjct: 126853 gtggagaaaggggaggtggagagga 126877
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>emb|AL034348.5|HS84D21 Human DNA sequence from clone RP1-84D21 on chromosome 6q15-16.3,
             complete sequence
          Length = 120514

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    ctgctactgagaagaggaaaa 89
             |||||||||||||||||||||
Sbjct: 58091 ctgctactgagaagaggaaaa 58111
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>gb|AC094527.7| Rattus norvegicus 5 BAC CH230-4L11 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216616

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 71     gctactgagaagaggaaaaatttcc 95
              ||||||||||| |||||||||||||
Sbjct: 118055 gctactgagaaaaggaaaaatttcc 118031
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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 300    ccaccaaaagataagaagaat 320
              |||||||||||||||||||||
Sbjct: 834433 ccaccaaaagataagaagaat 834413
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 385     cagatcatcgctcaaagattgaaga 409
               |||| ||||||||||||||||||||
Sbjct: 8386307 cagagcatcgctcaaagattgaaga 8386283
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>gb|AC138123.2| Homo sapiens 12 BAC RP11-202G11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 107706

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 338    cagctaaaacagtggaaaagg 358
              |||||||||||||||||||||
Sbjct: 101248 cagctaaaacagtggaaaagg 101228
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>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453G03
          Length = 144480

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 640   gtggagaaaggagaggtggag 660
             |||||||||||||||||||||
Sbjct: 51631 gtggagaaaggagaggtggag 51611
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>ref|NM_188517.1| Oryza sativa (japonica cultivar-group), Ozsa8186 predicted mRNA
          Length = 2307

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  tgcttccttcagcacagaaa 285
            ||||||||||||||||||||
Sbjct: 1603 tgcttccttcagcacagaaa 1584
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 678    cttgcagaacctgctggtgaagcc 701
              |||||||||||||| |||||||||
Sbjct: 302718 cttgcagaacctgccggtgaagcc 302695
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 65      tgtactgctactgagaagag 84
               ||||||||||||||||||||
Sbjct: 1203685 tgtactgctactgagaagag 1203704
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>gb|AE017139.1| Yersinia pestis biovar Medievalis str. 91001 section 13 of 16 of the
              complete genome
          Length = 294253

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    tgccgatgagccaacgaccg 574
              ||||||||||||||||||||
Sbjct: 279975 tgccgatgagccaacgaccg 279956
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>gb|AC115063.8| Mus musculus chromosome 1, clone RP24-400H18, complete sequence
          Length = 192133

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    gcacagaaagttttcaatca 296
              ||||||||||||||||||||
Sbjct: 135086 gcacagaaagttttcaatca 135067
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>gb|AC183529.4| Pan troglodytes BAC clone CH251-669H19 from chromosome 3, complete
             sequence
          Length = 216860

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 675   gtccttgcagaacctgctgg 694
             ||||||||||||||||||||
Sbjct: 67949 gtccttgcagaacctgctgg 67968
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 555     tgccgatgagccaacgaccg 574
               ||||||||||||||||||||
Sbjct: 4260046 tgccgatgagccaacgaccg 4260065
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>ref|XM_838306.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1223)
            partial mRNA
          Length = 3669

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   tgtactgctactgagaagag 84
            ||||||||||||||||||||
Sbjct: 2295 tgtactgctactgagaagag 2276
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>gb|DP000038.2| Colobus guereza target 106 genomic scaffold
          Length = 481828

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     tattgtactgctactgagaa 81
              ||||||||||||||||||||
Sbjct: 198699 tattgtactgctactgagaa 198718
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>gb|AC117599.14| Mus musculus chromosome 1, clone RP23-426D21, complete sequence
          Length = 195683

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   gcacagaaagttttcaatca 296
             ||||||||||||||||||||
Sbjct: 14033 gcacagaaagttttcaatca 14014
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>emb|Z93016.2|HS211D12 Human DNA sequence from clone RP1-211D12 on chromosome 20q12-13.2
             Contains the 3' end of the STK4 gene encoding
             serine/threonine kinase 4, the KCNS1 gene for potassium
             voltage-gated channel, delayed-rectifier (subfamily S,
             member 1), the WFDC5 gene for WAP four-disulfide core
             domain 5, the WFDC12 gene for WAP four-disulfide core
             domain 12 and a CpG island, complete sequence
          Length = 126270

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tattgtactgctactgagaa 81
             ||||||||||||||||||||
Sbjct: 43526 tattgtactgctactgagaa 43545
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>emb|Z97055.1|HS388M5 Human DNA sequence from clone RP3-388M5 on chromosome 22, complete
             sequence
          Length = 177568

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 677   ccttgcagaacctgctggtg 696
             ||||||||||||||||||||
Sbjct: 31563 ccttgcagaacctgctggtg 31582
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>gb|AC117481.8| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 138412

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 675   gtccttgcagaacctgctgg 694
             ||||||||||||||||||||
Sbjct: 33209 gtccttgcagaacctgctgg 33190
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 555     tgccgatgagccaacgaccg 574
               ||||||||||||||||||||
Sbjct: 4584905 tgccgatgagccaacgaccg 4584886
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>emb|AJ414160.1| Yersinia pestis strain CO92 complete genome; segment 20/20
          Length = 203728

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 555   tgccgatgagccaacgaccg 574
             ||||||||||||||||||||
Sbjct: 59079 tgccgatgagccaacgaccg 59060
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>gb|AC113188.6| Homo sapiens chromosome 8, clone CTD-2546M19, complete sequence
          Length = 194602

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 636    tggcgtggagaaaggagagg 655
              ||||||||||||||||||||
Sbjct: 147580 tggcgtggagaaaggagagg 147561
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>gb|AC117401.3| Homo sapiens 3 BAC RP11-521J5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 197360

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 675    gtccttgcagaacctgctgg 694
              ||||||||||||||||||||
Sbjct: 162383 gtccttgcagaacctgctgg 162364
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>gb|AC004943.2| Homo sapiens PAC clone RP5-991G20 from 16, complete sequence
          Length = 141313

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 644   agaaaggagaggtggagagg 663
             ||||||||||||||||||||
Sbjct: 86465 agaaaggagaggtggagagg 86446
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>gb|AC183102.3| Pan troglodytes BAC clone CH251-717M1 from chromosome 3, complete
             sequence
          Length = 172268

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 675   gtccttgcagaacctgctgg 694
             ||||||||||||||||||||
Sbjct: 68665 gtccttgcagaacctgctgg 68646
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>gb|AC109823.4| Homo sapiens BAC clone RP11-663M18 from 4, complete sequence
          Length = 80208

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 641   tggagaaaggagaggtggag 660
             ||||||||||||||||||||
Sbjct: 47582 tggagaaaggagaggtggag 47601
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>gb|BC016638.1|BC016638 Homo sapiens, clone IMAGE:4384966, mRNA
          Length = 2187

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 641  tggagaaaggagaggtggag 660
            ||||||||||||||||||||
Sbjct: 1893 tggagaaaggagaggtggag 1912
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>gb|DP000037.1| Pan troglodytes target 106 genomic scaffold
          Length = 302717

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tattgtactgctactgagaa 81
             ||||||||||||||||||||
Sbjct: 75420 tattgtactgctactgagaa 75439
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>gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold
          Length = 355851

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tattgtactgctactgagaa 81
             ||||||||||||||||||||
Sbjct: 95943 tattgtactgctactgagaa 95962
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>gb|DP000043.1| Macaca mulatta target 106 genomic scaffold
          Length = 373358

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tattgtactgctactgagaa 81
             ||||||||||||||||||||
Sbjct: 86884 tattgtactgctactgagaa 86903
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>gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold
          Length = 644818

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     tattgtactgctactgagaa 81
              ||||||||||||||||||||
Sbjct: 185613 tattgtactgctactgagaa 185632
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>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold
          Length = 583711

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     tattgtactgctactgagaa 81
              ||||||||||||||||||||
Sbjct: 215738 tattgtactgctactgagaa 215757
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>gb|AC016355.8| Homo sapiens chromosome 15, clone RP11-502I4, complete sequence
          Length = 186428

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   cagctaaaacagtggaaaag 357
             ||||||||||||||||||||
Sbjct: 69787 cagctaaaacagtggaaaag 69806
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 266     tgcttccttcagcacagaaa 285
               ||||||||||||||||||||
Sbjct: 6712438 tgcttccttcagcacagaaa 6712419
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>gb|AF042089.1|AF042089 Homo sapiens chromosome 3, olfactory receptor pseudogene cluster 1,
              complete sequence, and myosin light chain kinase (MLCK)
              pseudogene, partial sequence
          Length = 106926

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 675    gtccttgcagaacctgctgg 694
              ||||||||||||||||||||
Sbjct: 103704 gtccttgcagaacctgctgg 103685
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>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0443E05
          Length = 176935

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   tgcttccttcagcacagaaa 285
             ||||||||||||||||||||
Sbjct: 64590 tgcttccttcagcacagaaa 64571
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>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence
          Length = 536165

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 509    tgcgggacctgatcgtcacagctg 532
              ||||||||||||| ||||||||||
Sbjct: 202749 tgcgggacctgattgtcacagctg 202726
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>gb|L43496.1|XELLIGI Xenopus laevis ligase I (ligI) mRNA, complete cds
          Length = 3770

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 aatcaaatccaccaaaagat 311
           ||||||||||||||||||||
Sbjct: 702 aatcaaatccaccaaaagat 721
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>dbj|AP004291.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1361H8
          Length = 158755

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 636   tggcgtggagaaaggagagg 655
             ||||||||||||||||||||
Sbjct: 87567 tggcgtggagaaaggagagg 87548
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>dbj|AB040883.1| Homo sapiens mRNA for KIAA1450 protein, partial cds
          Length = 4570

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 641  tggagaaaggagaggtggag 660
            ||||||||||||||||||||
Sbjct: 1745 tggagaaaggagaggtggag 1764


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,788,560
Number of Sequences: 3902068
Number of extensions: 5788560
Number of successful extensions: 119429
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119092
Number of HSP's gapped (non-prelim): 337
length of query: 715
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 692
effective length of database: 17,143,297,704
effective search space: 11863162011168
effective search space used: 11863162011168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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