>dbj|AB055152.1| Triticum aestivum mrpl11 mRNA for mitochondrial ribosomal protein
           L11, complete cds
          Length = 956

 Score =  176 bits (89), Expect = 3e-41
 Identities = 106/112 (94%)
 Strand = Plus / Minus

                                                                       
Query: 257 ccggtcagagatccttcacgatttcaatgcccatggacttggccgtgccgatgatggact 316
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 617 ccggtcagagatccttgacgatttcgatgcccatggacttggccgtgccgatgatggact 558

                                                               
Query: 317 tgcacagggcctcgagggacatgtgcttgcagaacggntcggactgtttcag 368
           |||||||||||||||| |||||||||||||||||||| || ||||| |||||
Sbjct: 557 tgcacagggcctcgagcgacatgtgcttgcagaacgggtctgactgcttcag 506

>ref|NM_196922.1| Oryza sativa (japonica cultivar-group) putative ribosomal protein
           L11 (OSJNBa0006L06.28), mRNA
          Length = 468

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 280 tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcgagggacatg 339
           |||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 449 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 390

                    
Query: 340 tgcttgcag 348
           |||||||||
Sbjct: 389 tgcttgcag 381

>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
             sequence
          Length = 162339

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                         
Query: 280   tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcgagggacatg 339
             |||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 31366 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 31425

                      
Query: 340   tgcttgcag 348
             |||||||||
Sbjct: 31426 tgcttgcag 31434

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                            
Query: 280      tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcgagggacatg 339
                |||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 16686849 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 16686908

                         
Query: 340      tgcttgcag 348
                |||||||||
Sbjct: 16686909 tgcttgcag 16686917

>dbj|AK063749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G08, full
           insert sequence
          Length = 849

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 280 tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcgagggacatg 339
           |||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 553 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 494

                    
Query: 340 tgcttgcag 348
           |||||||||
Sbjct: 493 tgcttgcag 485

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                            
Query: 280      tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcgagggacatg 339
                |||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 16695889 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 16695948

                         
Query: 340      tgcttgcag 348
                |||||||||
Sbjct: 16695949 tgcttgcag 16695957

>gb|AY137517.1| Hordeum vulgare subsp. vulgare hypersensitive-induced reaction
            protein 3 (hir3) gene, complete cds
          Length = 6537

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1    aatttgaactaaaaccatgacatttattttgga 33
            |||||||||||||||||||||| ||||||||||
Sbjct: 5864 aatttgaactaaaaccatgacacttattttgga 5896

>gb|AY821714.1| Peridictyon sanctum beta amylase gene, partial cds; and Stowaway
            MITE, complete sequence
          Length = 1475

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 1    aatttgaactaaaaccatgacatttattttggaacagggggagtagtaga 50
            |||||||||||||||||||||  ||||||| || | | ||||||||||||
Sbjct: 1239 aatttgaactaaaaccatgacgcttattttagatcggagggagtagtaga 1288



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 1    aatttgaactaaaaccatgacatttattttgga 33
            ||||||||||||||||| |||  ||||||||||
Sbjct: 1242 aatttgaactaaaaccacgacgcttattttgga 1210

>gb|BT017431.1| Zea mays clone EL01N0403D07.c mRNA sequence
          Length = 1181

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 25  tattttggaacagggggagtagta 48
           ||||||||||||||||||||||||
Sbjct: 757 tattttggaacagggggagtagta 780

>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed
            globulin (Glo-2) gene, complete cds; HMW-glutenin
            (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and
            HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds
          Length = 102842

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 6    gaactaaaaccatgacatttattttggaacagggggagtagtag 49
            |||||||||||| |||||||||||| || | | |||||||||||
Sbjct: 4483 gaactaaaaccacgacatttattttcgatcggagggagtagtag 4526

>emb|CR626933.1| Triticum turgidum
          Length = 25216

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 1     aatttgaactaaaaccatgacatttattttgg 32
             ||||||||||||||||| |||| |||||||||
Sbjct: 11850 aatttgaactaaaaccaagacacttattttgg 11819

>emb|CR626929.1| Triticum aestivum
          Length = 20745

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 1     aatttgaactaaaaccatgacatttattttgg 32
             ||||||||||||||||| |||| |||||||||
Sbjct: 14568 aatttgaactaaaaccaagacacttattttgg 14537

>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
          Length = 77136

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 2     atttgaactaaaaccatgacatttattttgga 33
             ||||||||||||||||||||| |||| |||||
Sbjct: 59686 atttgaactaaaaccatgacaattatgttgga 59717



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 2     atttgaactaaaaccatgacatttattttgga 33
             |||| |||||||| ||||||||||||||||||
Sbjct: 59678 atttaaactaaaatcatgacatttattttgga 59647

>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 3     tttgaactaaaaccatgacatttattttgga 33
             |||||||||||||||  ||||||||||||||
Sbjct: 48384 tttgaactaaaaccacaacatttattttgga 48414

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 25       tattttggaacagggggagtag 46
                ||||||||||||||||||||||
Sbjct: 22773657 tattttggaacagggggagtag 22773678

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 25       tattttggaacagggggagtagtaga 50
                |||||||||||||||||| |||||||
Sbjct: 28535175 tattttggaacagggggaatagtaga 28535150



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 22      atttattttggaacagggggagta 45
               |||||||||||||||| |||||||
Sbjct: 7263733 atttattttggaacagagggagta 7263710



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 25      tattttggaacagggggagtagta 48
               ||||||||||||| ||||||||||
Sbjct: 1722940 tattttggaacagagggagtagta 1722963

>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0034C09
          Length = 170226

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 25    tattttggaacagggggagtagtaga 50
             |||||||||||||||||| |||||||
Sbjct: 61614 tattttggaacagggggaatagtaga 61589

>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0633E08
          Length = 136471

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 25    tattttggaacagggggagtag 46
             ||||||||||||||||||||||
Sbjct: 60608 tattttggaacagggggagtag 60629

>dbj|AK107426.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A02, full
            insert sequence
          Length = 1640

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 25   tattttggaacagggggagtagtaga 50
            |||||||||||||||||| |||||||
Sbjct: 1280 tattttggaacagggggaatagtaga 1305

>dbj|AK073675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050M21, full
            insert sequence
          Length = 1559

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 25   tattttggaacagggggagtagtaga 50
            |||||||||||||||||| |||||||
Sbjct: 1201 tattttggaacagggggaatagtaga 1226

>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 21    catttattttggaacagggggagta 45
             ||||||||||| |||||||||||||
Sbjct: 62966 catttattttgaaacagggggagta 62942

>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0030I09 map C83B, complete sequence
          Length = 123477

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    atttattttggaacagggggagta 45
             |||||||||||||| |||||||||
Sbjct: 58045 atttattttggaacggggggagta 58022

>gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1122_B08,
             complete sequence
          Length = 143955

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    tttattttggaacagggggagtag 46
             ||||||||||||||| ||||||||
Sbjct: 31887 tttattttggaacagagggagtag 31864

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 155     agataaatcccatccctacc 174
               ||||||||||||||||||||
Sbjct: 4019134 agataaatcccatccctacc 4019153

>gb|AC108677.4| Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 107650

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     tactacccgaccaccaccaa 84
              ||||||||||||||||||||
Sbjct: 102391 tactacccgaccaccaccaa 102372

>gb|AC009520.16| Homo sapiens 3 BAC RP11-392H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161517

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    gctagtccagccagaccggt 261
              ||||||||||||||||||||
Sbjct: 109937 gctagtccagccagaccggt 109918

>gb|AC074331.2|AC074331 Homo sapiens chromosome 19, BAC CTC-204F22 (BC228680), complete
            sequence
          Length = 156321

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 167  tccctacctttctttcaaat 186
            ||||||||||||||||||||
Sbjct: 6968 tccctacctttctttcaaat 6987

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 22      atttattttggaacagggggagta 45
               |||||||||||||| |||||||||
Sbjct: 2564359 atttattttggaacggggggagta 2564382

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 25       tattttggaacagggggagtagta 48
                ||||||||||||| ||||||||||
Sbjct: 16248922 tattttggaacagagggagtagta 16248945

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 23      tttattttggaacagggggagtag 46
               ||||||||||||||| ||||||||
Sbjct: 8310843 tttattttggaacagagggagtag 8310820

>gb|AC138470.1| Homo sapiens chromosome 19 clone CTC-204F22, complete sequence
          Length = 156312

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    tccctacctttctttcaaat 186
              ||||||||||||||||||||
Sbjct: 149345 tccctacctttctttcaaat 149326

>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431F01
          Length = 143209

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    atttattttggaacagggggagta 45
             |||||||||||||||| |||||||
Sbjct: 65163 atttattttggaacagagggagta 65140

>gb|AY156910.1| Trichoderma sp. SY xylanase mRNA, complete cds
          Length = 841

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 tggccgtgccgatgatggac 315
           ||||||||||||||||||||
Sbjct: 546 tggccgtgccgatgatggac 527

>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504H10
          Length = 143515

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    tattttggaacagggggagtagta 48
             ||||||||||||| ||||||||||
Sbjct: 65283 tattttggaacagagggagtagta 65306

>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1344_B01
          Length = 170912

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    tattttggaacagggggagtagta 48
             ||||||||||||| ||||||||||
Sbjct: 65438 tattttggaacagagggagtagta 65461

>gb|AC021092.1|AC021092 Homo sapiens chromosome 19, cosmid R29827, complete sequence
          Length = 38897

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   tccctacctttctttcaaat 186
             ||||||||||||||||||||
Sbjct: 30293 tccctacctttctttcaaat 30312

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 22      atttattttggaacagggggagta 45
               |||||||||||||| |||||||||
Sbjct: 2573390 atttattttggaacggggggagta 2573413

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 294     cttggccgtgccgatgatgg 313
               ||||||||||||||||||||
Sbjct: 1830222 cttggccgtgccgatgatgg 1830203


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,673,669
Number of Sequences: 3902068
Number of extensions: 2673669
Number of successful extensions: 46650
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46378
Number of HSP's gapped (non-prelim): 272
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)