ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C) 32 1.8
2E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (... 32 1.8
3E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B) 32 1.8
4RASA1_RAT (P50904) Ras GTPase-activating protein 1 (GTPase-activ... 30 5.1
5SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF 30 8.7
6RASA1_HUMAN (P20936) Ras GTPase-activating protein 1 (GTPase-act... 30 8.7

>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)|
          Length = 1412

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/84 (22%), Positives = 34/84 (40%)
 Frame = -3

Query: 567  AAQNSSSSTGAXXXXXXXXXXXXXXQGPNAFSSIRTEEPGGGPPTALAKLTNRLNFLKER 388
            ++ +SSSS+ +                   F S  +   G   P + +  +N    L E 
Sbjct: 1264 SSSSSSSSSSSSSSSTSSNCSSSSASSCQYFQSPHSTSNGTSAPASSSSGSNSATPLLEL 1323

Query: 387  RALLASEMQNLDLARPPTAPPPNK 316
            +  +A   Q L+L++    PPP+K
Sbjct: 1324 QVDIADSAQPLNLSKKSPTPPPSK 1347



to top

>E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (E75-A)|
          Length = 1199

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/84 (22%), Positives = 34/84 (40%)
 Frame = -3

Query: 567  AAQNSSSSTGAXXXXXXXXXXXXXXQGPNAFSSIRTEEPGGGPPTALAKLTNRLNFLKER 388
            ++ +SSSS+ +                   F S  +   G   P + +  +N    L E 
Sbjct: 1051 SSSSSSSSSSSSSSSTSSNCSSSSASSCQYFQSPHSTSNGTSAPASSSSGSNSATPLLEL 1110

Query: 387  RALLASEMQNLDLARPPTAPPPNK 316
            +  +A   Q L+L++    PPP+K
Sbjct: 1111 QVDIADSAQPLNLSKKSPTPPPSK 1134



to top

>E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B)|
          Length = 1355

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/84 (22%), Positives = 34/84 (40%)
 Frame = -3

Query: 567  AAQNSSSSTGAXXXXXXXXXXXXXXQGPNAFSSIRTEEPGGGPPTALAKLTNRLNFLKER 388
            ++ +SSSS+ +                   F S  +   G   P + +  +N    L E 
Sbjct: 1207 SSSSSSSSSSSSSSSTSSNCSSSSASSCQYFQSPHSTSNGTSAPASSSSGSNSATPLLEL 1266

Query: 387  RALLASEMQNLDLARPPTAPPPNK 316
            +  +A   Q L+L++    PPP+K
Sbjct: 1267 QVDIADSAQPLNLSKKSPTPPPSK 1290



to top

>RASA1_RAT (P50904) Ras GTPase-activating protein 1 (GTPase-activating|
           protein) (GAP) (Ras p21 protein activator) (p120GAP)
           (RasGAP)
          Length = 1038

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -3

Query: 453 PGGG-----PPTALAKLTNRLNFLKERRALLASEMQNLDLARPPTAPPPNK 316
           PGGG     PP  L  L + L  + E  +L   E +  ++A P TAPP N+
Sbjct: 121 PGGGFPPLPPPPLLPPLGSGLGTVDEGDSLDGPEYEEEEVAIPLTAPPTNQ 171



to top

>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -3

Query: 486 PNAFSSIRTEEPGGGPPTALAKLTNRLNFLKERRALLASEMQNLDLARPPTAPP 325
           P A+     ++  GGPP  +       N L       A+ MQNL++ RPP   P
Sbjct: 7   PGAYRPNNNQQNSGGPPNFVPGSQGNPNSL-------AANMQNLNINRPPPPMP 53



to top

>RASA1_HUMAN (P20936) Ras GTPase-activating protein 1 (GTPase-activating|
           protein) (GAP) (Ras p21 protein activator) (p120GAP)
           (RasGAP)
          Length = 1047

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 14/127 (11%)
 Frame = -3

Query: 654 GSSAVGLNSLSRMLPNAGMADIVEQLRRQAAQNSSSSTGAXXXXXXXXXXXXXXQGPNAF 475
           GS  +G  S++  L  AG+              +   T A               GP+  
Sbjct: 68  GSEFLGAGSVAGALGGAGL--------------TGGGTAAGVAGAAAGVAGAAVAGPSGD 113

Query: 474 SSI---------RTEEPGGG-----PPTALAKLTNRLNFLKERRALLASEMQNLDLARPP 337
            ++          T  PGGG     PP  L  L   L  + E  +L   E +  ++A P 
Sbjct: 114 MALTKLPTSLLAETLGPGGGFPPLPPPPYLPPLGAGLGTVDEGDSLDGPEYEEEEVAIPL 173

Query: 336 TAPPPNK 316
           TAPP N+
Sbjct: 174 TAPPTNQ 180


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,029,149
Number of Sequences: 219361
Number of extensions: 2131870
Number of successful extensions: 5227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5226
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top