ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9f06 |
|---|---|
| Clone Library Name | barley_pub |
>CWC15_EMENI (Q5B020) Pre-mRNA-splicing factor cwc15| Length = 232 Score = 33.1 bits (74), Expect = 0.82 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Frame = -3 Query: 388 VESVAQQCTPQR-CEGPSDAPANYGDATRQETPQSTLVR-----RNVDGAGKTSESDAEK 227 V + + TP+R EG APAN GD +E P++ R R +D + SE D+ + Sbjct: 72 VPEASAESTPKRQLEG---APANGGDGELEEDPEAKRRRILEETREIDADSEASEEDSSE 128 Query: 226 SRGDD 212 DD Sbjct: 129 DESDD 133
>SPRC_RAT (P16975) SPARC precursor (Secreted protein acidic and rich in| cysteine) (Osteonectin) (ON) (Basement-membrane protein 40) (BM-40) Length = 302 Score = 32.7 bits (73), Expect = 1.1 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 7/81 (8%) Frame = -3 Query: 535 EVIEGTIAVKEAALQQNSAEVQVE------NRPNRVEEAVCSTNTCDSDSCACSGVESVA 374 E++ V+E L + VQVE VEE V N C + C V + Sbjct: 26 EMVAEETVVEETGLPVGANPVQVEMGEFEEGAEETVEEVVACNNPCQNHHCKHGKVCELD 85 Query: 373 QQCTPQ-RCEGPSDAPANYGD 314 + TP C+ P+ PA G+ Sbjct: 86 ESNTPMCVCQDPTSCPAPIGE 106
>OM6_CHLPS (P23701) 60 kDa outer membrane protein precursor (Cysteine-rich| outer membrane protein) (CRP) (60 kDa cysteine-rich OMP) Length = 557 Score = 32.3 bits (72), Expect = 1.4 Identities = 22/92 (23%), Positives = 36/92 (39%) Frame = -3 Query: 619 VLVIAPDSMLGTSADAKITSVGRWSVFGEVIEGTIAVKEAALQQNSAEVQVENRPNRVEE 440 V V+A SM + A KI + S+ I T + Q + +V+ N+ +E Sbjct: 9 VTVLALTSMASSFASGKIEAAAAESLATRFIASTENADDNVFQATAKKVRFGRNKNQRQE 68 Query: 439 AVCSTNTCDSDSCACSGVESVAQQCTPQRCEG 344 + CD + C G + T + C G Sbjct: 69 QKHTEAFCDKEFYPCEGGQCQPVDATQESCYG 100
>KI2L2_HUMAN (P43627) Killer cell immunoglobulin-like receptor 2DL2 precursor| (MHC class I NK cell receptor) (Natural killer-associated transcript 6) (NKAT-6) (p58 natural killer cell receptor clone CL-43) (p58 NK receptor) Length = 348 Score = 30.4 bits (67), Expect = 5.3 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 35 HHSGNKKLQLQPLALGGRVKDLVGKHHKYGHCCGKTYGQTTPKDPVNV 178 HH G K ++G ++DL G + YG Y + P DP+++ Sbjct: 76 HHDGVSKANF---SIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDI 120
>SWR1_CANAL (Q59U81) Helicase SWR1 (EC 3.6.1.-)| Length = 1641 Score = 30.4 bits (67), Expect = 5.3 Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 20/131 (15%) Frame = -3 Query: 535 EVIEGTIAVKEAALQQN-SAEVQVENRPNRVEEAVCSTNTCDSDSCACSGVESVAQQCTP 359 E++E + + EA L + V+ E+ N NT DSD+ + S E + T Sbjct: 527 EMLEHSTQLLEAQLTSSREPTVEAESDDN---STTFDDNTNDSDNFSSSEEEENEEDNTQ 583 Query: 358 QRCEGPSDAPAN-------------------YGDATRQETPQSTLVRRNVDGAGKTSESD 236 Q+ G N Y D P S+ V + + +TS D Sbjct: 584 QQINGNKKYDVNGKSNDENDMSLSVEELRKKYADLETSVEPLSSNVTSDKERESETSSED 643 Query: 235 AEKSRGDDHQV 203 AE S DD V Sbjct: 644 AESSDDDDTDV 654
>VATD_METJA (Q58032) V-type ATP synthase subunit D (EC 3.6.3.14) (V-type ATPase| subunit D) Length = 216 Score = 30.4 bits (67), Expect = 5.3 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = -3 Query: 613 VIAPDSMLGTSADAKITSVGRWSVFGEVIEGTIAVKEAALQQNSAEVQVE 464 +I S L +AK+ + + + + GT+AVKEAAL + +++V+ Sbjct: 42 IIEQASDLRDKVEAKLAEAYKDLIMAQTVMGTLAVKEAALAAKNDKLEVD 91
>KI2S2_HUMAN (P43631) Killer cell immunoglobulin-like receptor 2DS2 precursor| (MHC class I NK cell receptor) (Natural killer-associated transcript 5) (NKAT-5) (p58 natural killer cell receptor clone CL-49) (p58 NK receptor) (NK receptor 183 ActI) (CD158j Length = 304 Score = 30.4 bits (67), Expect = 5.3 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 35 HHSGNKKLQLQPLALGGRVKDLVGKHHKYGHCCGKTYGQTTPKDPVNV 178 HH G K ++G ++DL G + YG Y + P DP+++ Sbjct: 76 HHDGVSKANF---SIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDI 120
>KI2L3_HUMAN (P43628) Killer cell immunoglobulin-like receptor 2DL3 precursor| (MHC class I NK cell receptor) (Natural killer-associated transcript 2) (NKAT-2) (NKAT2a) (NKAT2b) (p58 natural killer cell receptor clone CL-6) (p58 NK receptor) (p58.2 MHC cla Length = 341 Score = 30.4 bits (67), Expect = 5.3 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 35 HHSGNKKLQLQPLALGGRVKDLVGKHHKYGHCCGKTYGQTTPKDPVNV 178 HH G K ++G ++DL G + YG Y + P DP+++ Sbjct: 76 HHDGVSKANF---SIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDI 120
>IPDE_DICDI (P22549) Cyclic nucleotide phosphodiesterase inhibitor precursor| (PDI) Length = 237 Score = 30.0 bits (66), Expect = 7.0 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -3 Query: 463 NRPNRVEEAVC--STNTCDSDSCACSGVESVAQQCT 362 NR N E C STNTCD + C G + QCT Sbjct: 196 NRNNGCETFTCNLSTNTCDYYAKNCGGWPCINNQCT 231
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = -3 Query: 442 EAVCSTNTCDSDSCACSGVESVAQQCTPQR--CEGPSDAP 329 +++C TC +D +C G + C PQ C+G D P Sbjct: 2753 DSICGAVTCAADMFSCQG----SHACVPQHWLCDGERDCP 2788 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,140,713 Number of Sequences: 219361 Number of extensions: 2328283 Number of successful extensions: 6702 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 6348 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6694 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
