ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 561 e-156
2ref|XM_470874.1| Oryza sativa (japonica cultivar-group), mRNA 553 e-154
3gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome... 553 e-154
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 553 e-154
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 553 e-154
6ref|NM_100933.2| Arabidopsis thaliana nucleotide binding AT1G105... 184 3e-43
7gb|AC007067.4|AC007067 Genomic sequence for Arabidopsis thaliana... 184 3e-43
8gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, comple... 44 0.61
9dbj|AP001838.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 44 0.61
10ref|XM_532261.2| PREDICTED: Canis familiaris similar to Pre-mRNA... 42 2.4
11emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in ... 42 2.4
12gb|AC113152.4| Homo sapiens BAC clone RP11-245L10 from 4, comple... 42 2.4
13ref|XM_342154.2| PREDICTED: Rattus norvegicus cell division cycl... 42 2.4
14emb|Z81512.1|CEF25C8 Caenorhabditis elegans Cosmid F25C8, comple... 42 2.4
15gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.5
16gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 40 9.5
17ref|XM_445638.1| Candida glabrata CBS138, CAGL0D05258g partial mRNA 40 9.5
18ref|XM_812351.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.5
19ref|XM_812791.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.5
20ref|XM_783741.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.5
21emb|AL137069.15| Human DNA sequence from clone RP11-167C5 on chr... 40 9.5
22gb|AC040933.12| Homo sapiens chromosome 17, clone CTD-2019C10, c... 40 9.5
23emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, ... 40 9.5
24ref|XM_779540.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.5
25emb|CR380950.1| Candida glabrata strain CBS138 chromosome D comp... 40 9.5
26emb|AJ719593.1| Gallus gallus mRNA for hypothetical protein, clo... 40 9.5
27gb|AC106864.5| Homo sapiens BAC clone RP11-148B6 from 4, complet... 40 9.5
28ref|NM_001006139.1| Gallus gallus MCM2 minichromosome maintenanc... 40 9.5
29gb|AC087491.5| Homo sapiens chromosome 17, clone RP11-62N23, com... 40 9.5
30gb|AC157350.29| Medicago truncatula clone mth2-143n6, complete s... 40 9.5
31gb|AF435975.1| Homo sapiens dopamine- and cAMP-regulated neurona... 40 9.5
32gb|AC090333.5| Homo sapiens chromosome 18, clone RP11-843P6, com... 40 9.5
33gb|AC009854.9| Homo sapiens chromosome 18, clone RP11-333A13, co... 40 9.5
34gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, compl... 40 9.5
35gb|AC106777.2| Homo sapiens chromosome 5 clone RP11-326M11, comp... 40 9.5
36gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, compl... 40 9.5
37ref|XM_572042.1| Cryptococcus neoformans var. neoformans JEC21 c... 40 9.5
38gb|AC097470.3| Homo sapiens BAC clone RP11-65E19 from 4, complet... 40 9.5
39gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, comp... 40 9.5
40gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 40 9.5
41gb|AC037459.16| Homo sapiens chromosome 8, clone RP11-582J16, co... 40 9.5
42gb|AC096632.3| Homo sapiens chromosome 1 clone RP11-38O14, compl... 40 9.5
43gb|L37747.1|HUMLAM11 Homo sapiens lamin B1 gene, exon 11, comple... 40 9.5
44dbj|AK107697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.5
45emb|BX255967.4| Zebrafish DNA sequence from clone CH211-191G22 i... 40 9.5
46emb|AL132778.6|CNS01DTJ Human chromosome 14 DNA sequence BAC C-2... 40 9.5
47gb|AC087854.11| Homo sapiens chromosome 8, clone RP11-382J24, co... 40 9.5
48emb|AL122057.4|CNS01DSZ Human chromosome 14 DNA sequence BAC R-2... 40 9.5 
>dbj|AK073478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C19, full
            insert sequence
          Length = 2181

 Score =  561 bits (283), Expect = e-156
 Identities = 403/443 (90%)
 Strand = Plus / Minus

                                                                        
Query: 254  aatcccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatg 313
            |||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1800 aatcccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagg 1741

                                                                        
Query: 314  gatgccactcacatccaatgcaaactccgttgtggcacttcaatgtcttgaatctcctgc 373
            |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 1740 gatgccactcacatccaatgcaaactccattgtggcacttcaacgtcttaaatctcctgc 1681

                                                                        
Query: 374  agcttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctcc 433
            |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1680 agcttttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctcc 1621

                                                                        
Query: 434  catcaggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctct 493
            |||| || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||
Sbjct: 1620 catctggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgct 1561

                                                                        
Query: 494  tcttcttattaagttgaaacctttccttggtgctgtatatcagtatctgattgtccaagc 553
            ||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||
Sbjct: 1560 tcttcttgttaagttgaaacctctccttggtactgtatatcaatatctgattgtccaagc 1501

                                                                        
Query: 554  tctgtgctgccagccagttagagtttgggtgtactgcaatagacggcatggagtgcatgt 613
            ||||||||||||||||||| || || ||||| | ||  || || ||||| || |||||||
Sbjct: 1500 tctgtgctgccagccagttggaattcgggtgcagtgatattgatggcattgaatgcatgt 1441

                                                                        
Query: 614  gtggctcactgatatacttaataactacagggataccaaactcccacacacgaagagact 673
            |||| ||||||||||||||||| || || ||||| || ||||||||||||||||| ||||
Sbjct: 1440 gtggttcactgatatacttaatcaccactgggatgccgaactcccacacacgaagcgact 1381

                                   
Query: 674  tgtcatcgctagatgtcacaaac 696
            |||||||||| ||||||||||||
Sbjct: 1380 tgtcatcgcttgatgtcacaaac 1358
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>ref|XM_470874.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2029

 Score =  553 bits (279), Expect = e-154
 Identities = 399/439 (90%)
 Strand = Plus / Minus

                                                                        
Query: 258  ccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatggatg 317
            |||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1756 ccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagggatg 1697

                                                                        
Query: 318  ccactcacatccaatgcaaactccgttgtggcacttcaatgtcttgaatctcctgcagct 377
            |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 1696 ccactcacatccaatgcaaactccattgtggcacttcaacgtcttaaatctcctgcagct 1637

                                                                        
Query: 378  tttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctcccatc 437
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 1636 tttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctcccatc 1577

                                                                        
Query: 438  aggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctcttctt 497
             || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||||||
Sbjct: 1576 tggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgcttctt 1517

                                                                        
Query: 498  cttattaagttgaaacctttccttggtgctgtatatcagtatctgattgtccaagctctg 557
            ||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1516 cttgttaagttgaaacctctccttggtactgtatatcaatatctgattgtccaagctctg 1457

                                                                        
Query: 558  tgctgccagccagttagagtttgggtgtactgcaatagacggcatggagtgcatgtgtgg 617
            ||||||||||||||| || || ||||| | ||  || || ||||| || |||||||||||
Sbjct: 1456 tgctgccagccagttggaattcgggtgcagtgatattgatggcattgaatgcatgtgtgg 1397

                                                                        
Query: 618  ctcactgatatacttaataactacagggataccaaactcccacacacgaagagacttgtc 677
             ||||||||||||||||| || || ||||| || ||||||||||||||||| ||||||||
Sbjct: 1396 ttcactgatatacttaatcaccactgggatgccgaactcccacacacgaagcgacttgtc 1337

                               
Query: 678  atcgctagatgtcacaaac 696
            |||||| ||||||||||||
Sbjct: 1336 atcgcttgatgtcacaaac 1318
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>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11,
              complete sequence
          Length = 169728

 Score =  553 bits (279), Expect = e-154
 Identities = 399/439 (90%)
 Strand = Plus / Plus

                                                                          
Query: 258    ccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatggatg 317
              |||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 144534 ccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagggatg 144593

                                                                          
Query: 318    ccactcacatccaatgcaaactccgttgtggcacttcaatgtcttgaatctcctgcagct 377
              |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 144594 ccactcacatccaatgcaaactccattgtggcacttcaacgtcttaaatctcctgcagct 144653

                                                                          
Query: 378    tttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctcccatc 437
              |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 144654 tttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctcccatc 144713

                                                                          
Query: 438    aggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctcttctt 497
               || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||||||
Sbjct: 144714 tggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgcttctt 144773

                                                                          
Query: 498    cttattaagttgaaacctttccttggtgctgtatatcagtatctgattgtccaagctctg 557
              ||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 144774 cttgttaagttgaaacctctccttggtactgtatatcaatatctgattgtccaagctctg 144833

                                                                          
Query: 558    tgctgccagccagttagagtttgggtgtactgcaatagacggcatggagtgcatgtgtgg 617
              ||||||||||||||| || || ||||| | ||  || || ||||| || |||||||||||
Sbjct: 144834 tgctgccagccagttggaattcgggtgcagtgatattgatggcattgaatgcatgtgtgg 144893

                                                                          
Query: 618    ctcactgatatacttaataactacagggataccaaactcccacacacgaagagacttgtc 677
               ||||||||||||||||| || || ||||| || ||||||||||||||||| ||||||||
Sbjct: 144894 ttcactgatatacttaatcaccactgggatgccgaactcccacacacgaagcgacttgtc 144953

                                 
Query: 678    atcgctagatgtcacaaac 696
              |||||| ||||||||||||
Sbjct: 144954 atcgcttgatgtcacaaac 144972
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  553 bits (279), Expect = e-154
 Identities = 399/439 (90%)
 Strand = Plus / Minus

                                                                            
Query: 258      ccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatggatg 317
                |||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 15905883 ccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagggatg 15905824

                                                                            
Query: 318      ccactcacatccaatgcaaactccgttgtggcacttcaatgtcttgaatctcctgcagct 377
                |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 15905823 ccactcacatccaatgcaaactccattgtggcacttcaacgtcttaaatctcctgcagct 15905764

                                                                            
Query: 378      tttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctcccatc 437
                |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 15905763 tttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctcccatc 15905704

                                                                            
Query: 438      aggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctcttctt 497
                 || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||||||
Sbjct: 15905703 tggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgcttctt 15905644

                                                                            
Query: 498      cttattaagttgaaacctttccttggtgctgtatatcagtatctgattgtccaagctctg 557
                ||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 15905643 cttgttaagttgaaacctctccttggtactgtatatcaatatctgattgtccaagctctg 15905584

                                                                            
Query: 558      tgctgccagccagttagagtttgggtgtactgcaatagacggcatggagtgcatgtgtgg 617
                ||||||||||||||| || || ||||| | ||  || || ||||| || |||||||||||
Sbjct: 15905583 tgctgccagccagttggaattcgggtgcagtgatattgatggcattgaatgcatgtgtgg 15905524

                                                                            
Query: 618      ctcactgatatacttaataactacagggataccaaactcccacacacgaagagacttgtc 677
                 ||||||||||||||||| || || ||||| || ||||||||||||||||| ||||||||
Sbjct: 15905523 ttcactgatatacttaatcaccactgggatgccgaactcccacacacgaagcgacttgtc 15905464

                                   
Query: 678      atcgctagatgtcacaaac 696
                |||||| ||||||||||||
Sbjct: 15905463 atcgcttgatgtcacaaac 15905445



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 552      gctctgtgctgccagccagt 571
                ||||||||||||||||||||
Sbjct: 27763371 gctctgtgctgccagccagt 27763352
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  553 bits (279), Expect = e-154
 Identities = 399/439 (90%)
 Strand = Plus / Minus

                                                                            
Query: 258      ccagtattttatgacgccatcccatccacatgttgcaaccttgctagtctccaatggatg 317
                |||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 15900417 ccagtacttaattacgccatcccatccacatgttgcaaccttgctagtctccaagggatg 15900358

                                                                            
Query: 318      ccactcacatccaatgcaaactccgttgtggcacttcaatgtcttgaatctcctgcagct 377
                |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 15900357 ccactcacatccaatgcaaactccattgtggcacttcaacgtcttaaatctcctgcagct 15900298

                                                                            
Query: 378      tttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacctcccatc 437
                |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 15900297 tttccagtcccagaaccagcaactaccttcaccatctcctgacatcacgaacctcccatc 15900238

                                                                            
Query: 438      aggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacctcttctt 497
                 || |||||| |||| |||||||| ||||||||||||||||| || ||||||| ||||||
Sbjct: 15900237 tggtgagaagttcacttgacaagcgtaacctgccacaatgtgacccgcaaaccgcttctt 15900178

                                                                            
Query: 498      cttattaagttgaaacctttccttggtgctgtatatcagtatctgattgtccaagctctg 557
                ||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct: 15900177 cttgttaagttgaaacctctccttggtactgtatatcaatatctgattgtccaagctctg 15900118

                                                                            
Query: 558      tgctgccagccagttagagtttgggtgtactgcaatagacggcatggagtgcatgtgtgg 617
                ||||||||||||||| || || ||||| | ||  || || ||||| || |||||||||||
Sbjct: 15900117 tgctgccagccagttggaattcgggtgcagtgatattgatggcattgaatgcatgtgtgg 15900058

                                                                            
Query: 618      ctcactgatatacttaataactacagggataccaaactcccacacacgaagagacttgtc 677
                 ||||||||||||||||| || || ||||| || ||||||||||||||||| ||||||||
Sbjct: 15900057 ttcactgatatacttaatcaccactgggatgccgaactcccacacacgaagcgacttgtc 15899998

                                   
Query: 678      atcgctagatgtcacaaac 696
                |||||| ||||||||||||
Sbjct: 15899997 atcgcttgatgtcacaaac 15899979



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 552      gctctgtgctgccagccagt 571
                ||||||||||||||||||||
Sbjct: 27854694 gctctgtgctgccagccagt 27854675
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>ref|NM_100933.2| Arabidopsis thaliana nucleotide binding AT1G10580 mRNA, complete cds
          Length = 2073

 Score =  184 bits (93), Expect = 3e-43
 Identities = 258/313 (82%)
 Strand = Plus / Minus

                                                                        
Query: 371  tgcagcttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacc 430
            ||||||| ||||||||||| ||||||||  |||| |||||||| |||||||| |||||||
Sbjct: 1675 tgcagctcttccagtcccaaaaccagcacttaccctcaccatctcctgacattacaaacc 1616

                                                                        
Query: 431  tcccatcaggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacc 490
              ||||| || |||||| | || || || |||||||| || |||||||| ||||||||||
Sbjct: 1615 gtccatctggcgagaagttaacttggcatgcataaccggcaacaatgtgccctgcaaacc 1556

                                                                        
Query: 491  tcttcttcttattaagttgaaacctttccttggtgctgtatatcagtatctgattgtcca 550
            ||||||| ||||| || |||||||||||   ||| ||||| ||||| ||||| || ||||
Sbjct: 1555 tcttctttttattcagctgaaacctttctcgggtactgtagatcagaatctggttatcca 1496

                                                                        
Query: 551  agctctgtgctgccagccagttagagtttgggtgtactgcaatagacggcatggagtgca 610
            | |||||||| || ||||||||    || ||||| || | ||| || ||||| || ||||
Sbjct: 1495 aactctgtgcagcaagccagtttccattcgggtgaacagaaatggaaggcatagaatgca 1436

                                                                        
Query: 611  tgtgtggctcactgatatacttaataactacagggataccaaactcccacacacgaagag 670
            | || ||||||||||||||||| ||||| || ||||| ||||| ||||| ||||| ||||
Sbjct: 1435 tatgaggctcactgatatacttgataaccaccgggatcccaaattcccaaacacggagag 1376

                         
Query: 671  acttgtcatcgct 683
            |||| ||||||||
Sbjct: 1375 acttatcatcgct 1363
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>gb|AC007067.4|AC007067 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1,
             complete sequence
          Length = 89934

 Score =  184 bits (93), Expect = 3e-43
 Identities = 258/313 (82%)
 Strand = Plus / Plus

                                                                         
Query: 371   tgcagcttttccagtcccagaaccagcaactaccttcaccatcccctgacatcacaaacc 430
             ||||||| ||||||||||| ||||||||  |||| |||||||| |||||||| |||||||
Sbjct: 73149 tgcagctcttccagtcccaaaaccagcacttaccctcaccatctcctgacattacaaacc 73208

                                                                         
Query: 431   tcccatcaggagagaagctcacctgacaagcataacctgccacaatgtggcctgcaaacc 490
               ||||| || |||||| | || || || |||||||| || |||||||| ||||||||||
Sbjct: 73209 gtccatctggcgagaagttaacttggcatgcataaccggcaacaatgtgccctgcaaacc 73268

                                                                         
Query: 491   tcttcttcttattaagttgaaacctttccttggtgctgtatatcagtatctgattgtcca 550
             ||||||| ||||| || |||||||||||   ||| ||||| ||||| ||||| || ||||
Sbjct: 73269 tcttctttttattcagctgaaacctttctcgggtactgtagatcagaatctggttatcca 73328

                                                                         
Query: 551   agctctgtgctgccagccagttagagtttgggtgtactgcaatagacggcatggagtgca 610
             | |||||||| || ||||||||    || ||||| || | ||| || ||||| || ||||
Sbjct: 73329 aactctgtgcagcaagccagtttccattcgggtgaacagaaatggaaggcatagaatgca 73388

                                                                         
Query: 611   tgtgtggctcactgatatacttaataactacagggataccaaactcccacacacgaagag 670
             | || ||||||||||||||||| ||||| || ||||| ||||| ||||| ||||| ||||
Sbjct: 73389 tatgaggctcactgatatacttgataaccaccgggatcccaaattcccaaacacggagag 73448

                          
Query: 671   acttgtcatcgct 683
             |||| ||||||||
Sbjct: 73449 acttatcatcgct 73461
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>gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, complete sequence
          Length = 167776

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 158   ctacagtcccaactgaaagttg 179
             ||||||||||||||||||||||
Sbjct: 78265 ctacagtcccaactgaaagttg 78244
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>dbj|AP001838.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-718B20, complete
             sequences
          Length = 211652

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 545   tgtccaagctctgtgctgccag 566
             ||||||||||||||||||||||
Sbjct: 65120 tgtccaagctctgtgctgccag 65141
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>ref|XM_532261.2| PREDICTED: Canis familiaris similar to Pre-mRNA splicing factor PRP17
            (hPRP17) (Cell division cycle 40 homolog) (EH-binding
            protein 3) (Ehb3), transcript variant 1 (LOC475025), mRNA
          Length = 1848

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 450  cacctgacaagcataacctgc 470
            |||||||||||||||||||||
Sbjct: 1557 cacctgacaagcataacctgc 1537
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>emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in linkage group 8,
             complete sequence
          Length = 211489

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 36    ggtatggtatggtacacggtacatt 60
             |||||||| ||||||||||||||||
Sbjct: 57363 ggtatggtttggtacacggtacatt 57387
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>gb|AC113152.4| Homo sapiens BAC clone RP11-245L10 from 4, complete sequence
          Length = 109659

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 404   cttcaccatcccctgacatca 424
             |||||||||||||||||||||
Sbjct: 81924 cttcaccatcccctgacatca 81904
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>ref|XM_342154.2| PREDICTED: Rattus norvegicus cell division cycle 40 homolog (yeast)
            (predicted) (Cdc40_predicted), mRNA
          Length = 2683

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 450  cacctgacaagcataacctgccacaatgtggcc 482
            ||||||||||||||| ||||| || ||||||||
Sbjct: 1158 cacctgacaagcatagcctgctaccatgtggcc 1126
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>emb|Z81512.1|CEF25C8 Caenorhabditis elegans Cosmid F25C8, complete sequence
          Length = 40029

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   atgttttcactcgtgacatcg 131
             |||||||||||||||||||||
Sbjct: 34944 atgttttcactcgtgacatcg 34964
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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
              sequence
          Length = 1347793

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    ccatcccatccacatgttgc 293
              ||||||||||||||||||||
Sbjct: 983192 ccatcccatccacatgttgc 983173
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0024B16 map S2606, complete sequence
          Length = 124140

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 552  gctctgtgctgccagccagt 571
            ||||||||||||||||||||
Sbjct: 7500 gctctgtgctgccagccagt 7481
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>ref|XM_445638.1| Candida glabrata CBS138, CAGL0D05258g partial mRNA
          Length = 3513

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 tcctgcagcttttccagtcc 387
           ||||||||||||||||||||
Sbjct: 380 tcctgcagcttttccagtcc 399
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>ref|XM_812351.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510769.140) partial mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 465 acctgccacaatgtggcctgcaaacctc 492
           ||||||||||||||| |||| |||||||
Sbjct: 866 acctgccacaatgtgtcctggaaacctc 839
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>ref|XM_812791.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506241.50) partial mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 465 acctgccacaatgtggcctgcaaacctc 492
           ||||||||||||||| |||| |||||||
Sbjct: 866 acctgccacaatgtgtcctggaaacctc 839
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>ref|XM_783741.1| PREDICTED: Strongylocentrotus purpuratus similar to
            Tripeptidyl-peptidase II (TPP-II) (Tripeptidyl
            aminopeptidase) (LOC583848), partial mRNA
          Length = 3669

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 543  attgtccaagctctgtgctg 562
            ||||||||||||||||||||
Sbjct: 1320 attgtccaagctctgtgctg 1301
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>emb|AL137069.15| Human DNA sequence from clone RP11-167C5 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 171852

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 605   agtgcatgtgtggctcactg 624
             ||||||||||||||||||||
Sbjct: 58995 agtgcatgtgtggctcactg 59014
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>gb|AC040933.12| Homo sapiens chromosome 17, clone CTD-2019C10, complete sequence
          Length = 168585

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 367  ctcctgcagcttttccagtcccag 390
            ||||||||||||||||| ||||||
Sbjct: 7520 ctcctgcagcttttccactcccag 7497
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>emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, complete sequence
          Length = 164576

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 367    ctcctgcagcttttccagtcccag 390
              ||||||||||||||||| ||||||
Sbjct: 152821 ctcctgcagcttttccactcccag 152798
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>ref|XM_779540.1| PREDICTED: Strongylocentrotus purpuratus similar to non-muscle
            myosin, cytoplasmic, heavy chain II, required for the
            establishment of embryonic polarity; interacts with the
            serine threonine protein kinase PAR-1 (231.3 kD) (nmy-2)
            (LOC579422), partial mRNA
          Length = 1872

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 351  cttcaatgtcttgaatctcctgca 374
            |||||||||||| |||||||||||
Sbjct: 1642 cttcaatgtcttcaatctcctgca 1619
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>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence
          Length = 651701

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    tcctgcagcttttccagtcc 387
              ||||||||||||||||||||
Sbjct: 501237 tcctgcagcttttccagtcc 501256
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>emb|AJ719593.1| Gallus gallus mRNA for hypothetical protein, clone 4e20
          Length = 3648

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 377  ttttccagtcccagaaccag 396
            ||||||||||||||||||||
Sbjct: 1005 ttttccagtcccagaaccag 1024
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>gb|AC106864.5| Homo sapiens BAC clone RP11-148B6 from 4, complete sequence
          Length = 89690

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   actgttctctcatgttttca 119
             ||||||||||||||||||||
Sbjct: 87103 actgttctctcatgttttca 87122
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>ref|NM_001006139.1| Gallus gallus MCM2 minichromosome maintenance deficient 2, mitotin
            (S. cerevisiae) (MCM2), mRNA
          Length = 3648

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 377  ttttccagtcccagaaccag 396
            ||||||||||||||||||||
Sbjct: 1005 ttttccagtcccagaaccag 1024
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>gb|AC087491.5| Homo sapiens chromosome 17, clone RP11-62N23, complete sequence
          Length = 157216

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 367   ctcctgcagcttttccagtcccag 390
             ||||||||||||||||| ||||||
Sbjct: 56318 ctcctgcagcttttccactcccag 56295
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>gb|AC157350.29| Medicago truncatula clone mth2-143n6, complete sequence
          Length = 131960

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    atggtgcagtaggtatggta 44
             ||||||||||||||||||||
Sbjct: 30160 atggtgcagtaggtatggta 30141
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>gb|AF435975.1| Homo sapiens dopamine- and cAMP-regulated neuronal phosphoprotein
             (PPP1R1B) gene, complete cds, alternatively spliced
          Length = 34765

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 367   ctcctgcagcttttccagtcccag 390
             ||||||||||||||||| ||||||
Sbjct: 10916 ctcctgcagcttttccactcccag 10893
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>gb|AC090333.5| Homo sapiens chromosome 18, clone RP11-843P6, complete sequence
          Length = 165344

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    ttgacaaactgaatggtgca 32
             ||||||||||||||||||||
Sbjct: 26719 ttgacaaactgaatggtgca 26738
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>gb|AC009854.9| Homo sapiens chromosome 18, clone RP11-333A13, complete sequence
          Length = 207293

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    ttgacaaactgaatggtgca 32
             ||||||||||||||||||||
Sbjct: 91850 ttgacaaactgaatggtgca 91831
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>gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, complete sequence
          Length = 91874

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 635   taactacagggataccaaac 654
             ||||||||||||||||||||
Sbjct: 10475 taactacagggataccaaac 10494
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>gb|AC106777.2| Homo sapiens chromosome 5 clone RP11-326M11, complete sequence
          Length = 161720

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 494    tcttcttattaagttgaaaccttt 517
              |||||||||||||||||| |||||
Sbjct: 128534 tcttcttattaagttgaacccttt 128557
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>gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, complete sequence
          Length = 182564

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   taactacagggataccaaac 654
             ||||||||||||||||||||
Sbjct: 45454 taactacagggataccaaac 45435
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>ref|XM_572042.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 1950

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 274  ccatcccatccacatgttgc 293
            ||||||||||||||||||||
Sbjct: 1248 ccatcccatccacatgttgc 1267
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>gb|AC097470.3| Homo sapiens BAC clone RP11-65E19 from 4, complete sequence
          Length = 110702

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 253    taatcccagtattttatgacgcca 276
              ||||||||||||||||||| ||||
Sbjct: 106714 taatcccagtattttatgaggcca 106691
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>gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, complete sequence
          Length = 186972

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 635   taactacagggataccaaac 654
             ||||||||||||||||||||
Sbjct: 33113 taactacagggataccaaac 33132
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 552   gctctgtgctgccagccagt 571
             ||||||||||||||||||||
Sbjct: 50523 gctctgtgctgccagccagt 50542
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>gb|AC037459.16| Homo sapiens chromosome 8, clone RP11-582J16, complete sequence
          Length = 174888

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   ttttaatcccagtattttat 269
             ||||||||||||||||||||
Sbjct: 35103 ttttaatcccagtattttat 35122
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>gb|AC096632.3| Homo sapiens chromosome 1 clone RP11-38O14, complete sequence
          Length = 159539

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 94     ctgtttactgttctctcatgtttt 117
              ||||||||||||||| ||||||||
Sbjct: 121571 ctgtttactgttctcacatgtttt 121594
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>gb|L37747.1|HUMLAM11 Homo sapiens lamin B1 gene, exon 11, complete cds
          Length = 958

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 635 taactacagggataccaaac 654
           ||||||||||||||||||||
Sbjct: 80  taactacagggataccaaac 61
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>dbj|AK107697.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C07, full
           insert sequence
          Length = 602

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 552 gctctgtgctgccagccagt 571
           ||||||||||||||||||||
Sbjct: 438 gctctgtgctgccagccagt 457
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>emb|BX255967.4| Zebrafish DNA sequence from clone CH211-191G22 in linkage group 7,
              complete sequence
          Length = 146969

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 440    gagagaagctcacctgacaa 459
              ||||||||||||||||||||
Sbjct: 103988 gagagaagctcacctgacaa 104007
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>emb|AL132778.6|CNS01DTJ Human chromosome 14 DNA sequence BAC C-2568P8 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170125

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 253   taatcccagtattttatgacgcca 276
             |||||||||||||||| |||||||
Sbjct: 92944 taatcccagtattttaggacgcca 92921
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>gb|AC087854.11| Homo sapiens chromosome 8, clone RP11-382J24, complete sequence
          Length = 157419

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ttttaatcccagtattttat 269
             ||||||||||||||||||||
Sbjct: 10640 ttttaatcccagtattttat 10621
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>emb|AL122057.4|CNS01DSZ Human chromosome 14 DNA sequence BAC R-246E14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163149

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 253   taatcccagtattttatgacgcca 276
             |||||||||||||||| |||||||
Sbjct: 28965 taatcccagtattttaggacgcca 28942


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,334,247
Number of Sequences: 3902068
Number of extensions: 6334247
Number of successful extensions: 113814
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113582
Number of HSP's gapped (non-prelim): 230
length of query: 696
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 673
effective length of database: 17,143,297,704
effective search space: 11537439354792
effective search space used: 11537439354792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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