No.
Definition
Score (bits)
E Value
1 dbj|AK064983.1| Oryza sativa (japonica cultivar-group) cDNA clon...
422
e-115
2 dbj|AK062178.1| Oryza sativa (japonica cultivar-group) cDNA clon...
422
e-115
3 gb|AY110699.1| Zea mays CL19324_1 mRNA sequence
242
1e-60
4 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
113
7e-22
5 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
113
7e-22
6 emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb...
113
7e-22
7 gb|AC137821.22| Medicago truncatula clone mth2-15o11, complete s...
66
1e-07
8 emb|BX927256.13| Zebrafish DNA sequence from clone CH211-272F14 ...
42
2.1
9 gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, comp...
42
2.1
10 dbj|BS000180.1| Pan troglodytes chromosome 22 clone:RP43-184I13,...
42
2.1
11 gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosom...
40
8.4
12 emb|CR628410.11| Zebrafish DNA sequence from clone CH211-198D23 ...
40
8.4
13 gb|AC130548.3| Mus musculus BAC clone RP24-456F12 from chromosom...
40
8.4
14 gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome...
40
8.4
15 gb|AC135796.25| Medicago truncatula clone mth2-28b18, complete s...
40
8.4
16 emb|CR352982.1| Gallus gallus finished cDNA, clone ChEST538k24
40
8.4
17 gb|AC107078.4| Homo sapiens BAC clone RP11-582N16 from 2, comple...
40
8.4
18 gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, comple...
40
8.4
19 gb|AC153893.3| Mus musculus 10 BAC RP23-124O20 (Roswell Park Can...
40
8.4
20 gb|AC161533.22| Mus musculus chromosome 3, clone RP23-55N2, comp...
40
8.4
21 gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, com...
40
8.4
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 113 bits (57), Expect = 7e-22
Identities = 90/101 (89%)
Strand = Plus / Plus
Query: 397 attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 456
|||||||||||||||||||| |||||||| || ||||||||||||||||| || || |||
Sbjct: 7630216 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 7630275
Query: 457 ccatactcagtaatgtcacgtttcaaccgtagcccaccact 497
|| |||||||| || |||||||||| ||||| |||||||||
Sbjct: 7630276 ccgtactcagtgatatcacgtttcagccgtaacccaccact 7630316
Score = 99.6 bits (50), Expect = 1e-17
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 311 accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 370
||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 7630050 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 7630109
Query: 371 gagcaacaataaagacatttgccatg 396
||||||| || || ||||| ||||||
Sbjct: 7630110 gagcaacgatgaatacattggccatg 7630135
Score = 93.7 bits (47), Expect = 6e-16
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 559 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaac 617
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 7630808 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaac 7630866
Score = 89.7 bits (45), Expect = 1e-14
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 241 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 300
||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 7629893 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 7629952
Query: 301 agttgaatgaacc 313
|||||||||||||
Sbjct: 7629953 agttgaatgaacc 7629965
Score = 50.1 bits (25), Expect = 0.009
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 499 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 555
|||||||| |||||||| ||||||||||| || || ||||| |||| ||| ||||||
Sbjct: 7630394 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 7630450
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 113 bits (57), Expect = 7e-22
Identities = 90/101 (89%)
Strand = Plus / Plus
Query: 397 attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 456
|||||||||||||||||||| |||||||| || ||||||||||||||||| || || |||
Sbjct: 7630097 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 7630156
Query: 457 ccatactcagtaatgtcacgtttcaaccgtagcccaccact 497
|| |||||||| || |||||||||| ||||| |||||||||
Sbjct: 7630157 ccgtactcagtgatatcacgtttcagccgtaacccaccact 7630197
Score = 99.6 bits (50), Expect = 1e-17
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 311 accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 370
||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 7629931 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 7629990
Query: 371 gagcaacaataaagacatttgccatg 396
||||||| || || ||||| ||||||
Sbjct: 7629991 gagcaacgatgaatacattggccatg 7630016
Score = 93.7 bits (47), Expect = 6e-16
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 559 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaac 617
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 7630689 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaac 7630747
Score = 89.7 bits (45), Expect = 1e-14
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 241 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 300
||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 7629774 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 7629833
Query: 301 agttgaatgaacc 313
|||||||||||||
Sbjct: 7629834 agttgaatgaacc 7629846
Score = 50.1 bits (25), Expect = 0.009
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 499 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 555
|||||||| |||||||| ||||||||||| || || ||||| |||| ||| ||||||
Sbjct: 7630275 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 7630331
>emb|AL732646.5 |CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 151024
Score = 113 bits (57), Expect = 7e-22
Identities = 90/101 (89%)
Strand = Plus / Plus
Query: 397 attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 456
|||||||||||||||||||| |||||||| || ||||||||||||||||| || || |||
Sbjct: 17609 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 17668
Query: 457 ccatactcagtaatgtcacgtttcaaccgtagcccaccact 497
|| |||||||| || |||||||||| ||||| |||||||||
Sbjct: 17669 ccgtactcagtgatatcacgtttcagccgtaacccaccact 17709
Score = 99.6 bits (50), Expect = 1e-17
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 311 accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 370
||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 17443 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 17502
Query: 371 gagcaacaataaagacatttgccatg 396
||||||| || || ||||| ||||||
Sbjct: 17503 gagcaacgatgaatacattggccatg 17528
Score = 93.7 bits (47), Expect = 6e-16
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 559 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaac 617
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 18201 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaac 18259
Score = 89.7 bits (45), Expect = 1e-14
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 241 tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 300
||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 17286 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 17345
Query: 301 agttgaatgaacc 313
|||||||||||||
Sbjct: 17346 agttgaatgaacc 17358
Score = 50.1 bits (25), Expect = 0.009
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 499 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 555
|||||||| |||||||| ||||||||||| || || ||||| |||| ||| ||||||
Sbjct: 17787 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 17843
>gb|AC157492.17 | Mus musculus chromosome 3, clone RP24-73C21, complete sequence
Length = 187001
Score = 40.1 bits (20), Expect = 8.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 374 caacaataaagacatttgccatga 397
||||||||||| ||||||||||||
Sbjct: 184463 caacaataaaggcatttgccatga 184486
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,412,934
Number of Sequences: 3902068
Number of extensions: 5412934
Number of successful extensions: 102504
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102400
Number of HSP's gapped (non-prelim): 103
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)