ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK064983.1| Oryza sativa (japonica cultivar-group) cDNA clon... 422 e-115
2dbj|AK062178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 422 e-115
3gb|AY110699.1| Zea mays CL19324_1 mRNA sequence 242 1e-60
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 113 7e-22
6emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb... 113 7e-22
7gb|AC137821.22| Medicago truncatula clone mth2-15o11, complete s... 66 1e-07
8emb|BX927256.13| Zebrafish DNA sequence from clone CH211-272F14 ... 42 2.1
9gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, comp... 42 2.1
10dbj|BS000180.1| Pan troglodytes chromosome 22 clone:RP43-184I13,... 42 2.1
11gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosom... 40 8.4
12emb|CR628410.11| Zebrafish DNA sequence from clone CH211-198D23 ... 40 8.4
13gb|AC130548.3| Mus musculus BAC clone RP24-456F12 from chromosom... 40 8.4
14gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome... 40 8.4
15gb|AC135796.25| Medicago truncatula clone mth2-28b18, complete s... 40 8.4
16emb|CR352982.1| Gallus gallus finished cDNA, clone ChEST538k24 40 8.4
17gb|AC107078.4| Homo sapiens BAC clone RP11-582N16 from 2, comple... 40 8.4
18gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, comple... 40 8.4
19gb|AC153893.3| Mus musculus 10 BAC RP23-124O20 (Roswell Park Can... 40 8.4
20gb|AC161533.22| Mus musculus chromosome 3, clone RP23-55N2, comp... 40 8.4
21gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, com... 40 8.4

>dbj|AK064983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C13, full
            insert sequence
          Length = 2881

 Score =  422 bits (213), Expect = e-115
 Identities = 336/377 (89%)
 Strand = Plus / Minus

                                                                        
Query: 241  tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 300
            ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 2610 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 2551

                                                                        
Query: 301  agttgaatgaaccgcaaagcatccttccggatgctgggggttccttcaaacaaggaagct 360
            ||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 2550 agttgaatgaaccgcaaggcatctttccggatactgggggttccttcaaataaggaagct 2491

                                                                        
Query: 361  agactttccggagcaacaataaagacatttgccatgattccaagcagttcaaacttctca 420
            |||||||| |||||||| || || ||||| |||||||||||||||||||||||||| |||
Sbjct: 2490 agactttcaggagcaacgatgaatacattggccatgattccaagcagttcaaacttttca 2431

                                                                        
Query: 421  tctatggagggggcattgaagctacggacaaactccccatactcagtaatgtcacgtttc 480
            ||||| || ||||||||||||||||| || || ||||| |||||||| || |||||||||
Sbjct: 2430 tctatcgatggggcattgaagctacgaacgaattccccgtactcagtgatatcacgtttc 2371

                                                                        
Query: 481  aaccgtagcccaccactcggactaaacgtgaacttttgccaatgattaagaaggcccttg 540
            | ||||| ||||||||| |||||||| |||||||| ||||||||||| || || ||||| 
Sbjct: 2370 agccgtaacccaccactgggactaaatgtgaacttctgccaatgattgagtagcccctta 2311

                                                                        
Query: 541  tgcatgcggtttcccaattcagtcaaaaaggactgtttgtttagaccttctagggcactg 600
            |||| ||| |||||||  |||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 2310 tgcaagcgatttcccagctcagtcaaaaaggactgtttattgagaccttctagagcactg 2251

                             
Query: 601  aatgcaacctcgagaac 617
            |||||||||||||||||
Sbjct: 2250 aatgcaacctcgagaac 2234



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>dbj|AK062178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D06, full
            insert sequence
          Length = 1535

 Score =  422 bits (213), Expect = e-115
 Identities = 336/377 (89%)
 Strand = Plus / Minus

                                                                        
Query: 241  tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 300
            ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 1257 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 1198

                                                                        
Query: 301  agttgaatgaaccgcaaagcatccttccggatgctgggggttccttcaaacaaggaagct 360
            ||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 1197 agttgaatgaaccgcaaggcatctttccggatactgggggttccttcaaataaggaagct 1138

                                                                        
Query: 361  agactttccggagcaacaataaagacatttgccatgattccaagcagttcaaacttctca 420
            |||||||| |||||||| || || ||||| |||||||||||||||||||||||||| |||
Sbjct: 1137 agactttcaggagcaacgatgaatacattggccatgattccaagcagttcaaacttttca 1078

                                                                        
Query: 421  tctatggagggggcattgaagctacggacaaactccccatactcagtaatgtcacgtttc 480
            ||||| || ||||||||||||||||| || || ||||| |||||||| || |||||||||
Sbjct: 1077 tctatcgatggggcattgaagctacgaacgaattccccgtactcagtgatatcacgtttc 1018

                                                                        
Query: 481  aaccgtagcccaccactcggactaaacgtgaacttttgccaatgattaagaaggcccttg 540
            | ||||| ||||||||| |||||||| |||||||| ||||||||||| || || ||||| 
Sbjct: 1017 agccgtaacccaccactgggactaaatgtgaacttctgccaatgattgagtagcccctta 958

                                                                        
Query: 541  tgcatgcggtttcccaattcagtcaaaaaggactgtttgtttagaccttctagggcactg 600
            |||| ||| |||||||  |||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 957  tgcaagcgatttcccagctcagtcaaaaaggactgtttattgagaccttctagagcactg 898

                             
Query: 601  aatgcaacctcgagaac 617
            |||||||||||||||||
Sbjct: 897  aatgcaacctcgagaac 881



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>gb|AY110699.1| Zea mays CL19324_1 mRNA sequence
          Length = 967

 Score =  242 bits (122), Expect = 1e-60
 Identities = 251/299 (83%)
 Strand = Plus / Plus

                                                                       
Query: 319 gcatccttccggatgctgggggttccttcaaacaaggaagctagactttccggagcaaca 378
           |||||||| ||||||||     |||||||||||| ||| |||| |||||| |||||||||
Sbjct: 358 gcatcctttcggatgctnnnnnttccttcaaacagggatgctaaactttctggagcaaca 417

                                                                       
Query: 379 ataaagacatttgccatgattccaagcagttcaaacttctcatctatggagggggcattg 438
           || ||||| || ||||  ||||| | |||||| |||||||||||||||||     |||||
Sbjct: 418 atgaagacgttcgccacaattcccaacagttcgaacttctcatctatggannnnncattg 477

                                                                       
Query: 439 aagctacggacaaactccccatactcagtaatgtcacgtttcaaccgtagcccaccactc 498
           |||||||| || || |||||||| ||||| |||||||||||||||||||| |||||||| 
Sbjct: 478 aagctacgaacgaaatccccatattcagttatgtcacgtttcaaccgtaggccaccactg 537

                                                                       
Query: 499 ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttcccaat 558
           |||||||| |||||||| |||||||||||||| || ||||| |||| ||| |||||||  
Sbjct: 538 ggactaaatgtgaacttctgccaatgattaagcagccccttatgcaagcgatttcccagc 597

                                                                      
Query: 559 tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaac 617
           ||||||     |||||||||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 598 tcagtcnnnnnggactgtttgttgaggccttcaagggcactgaatgcaacctcaagaac 656



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Plus

                                                                           
Query: 397     attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 456
               |||||||||||||||||||| |||||||| || ||||||||||||||||| || || |||
Sbjct: 7630216 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 7630275

                                                        
Query: 457     ccatactcagtaatgtcacgtttcaaccgtagcccaccact 497
               || |||||||| || |||||||||| ||||| |||||||||
Sbjct: 7630276 ccgtactcagtgatatcacgtttcagccgtaacccaccact 7630316



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                           
Query: 311     accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 370
               ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 7630050 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 7630109

                                         
Query: 371     gagcaacaataaagacatttgccatg 396
               ||||||| || || ||||| ||||||
Sbjct: 7630110 gagcaacgatgaatacattggccatg 7630135



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                          
Query: 559     tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaac 617
               |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 7630808 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaac 7630866



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                           
Query: 241     tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 300
               ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 7629893 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 7629952

                            
Query: 301     agttgaatgaacc 313
               |||||||||||||
Sbjct: 7629953 agttgaatgaacc 7629965



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                        
Query: 499     ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 555
               |||||||| |||||||| ||||||||||| || || ||||| |||| ||| ||||||
Sbjct: 7630394 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 7630450



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Plus

                                                                           
Query: 397     attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 456
               |||||||||||||||||||| |||||||| || ||||||||||||||||| || || |||
Sbjct: 7630097 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 7630156

                                                        
Query: 457     ccatactcagtaatgtcacgtttcaaccgtagcccaccact 497
               || |||||||| || |||||||||| ||||| |||||||||
Sbjct: 7630157 ccgtactcagtgatatcacgtttcagccgtaacccaccact 7630197



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                           
Query: 311     accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 370
               ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 7629931 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 7629990

                                         
Query: 371     gagcaacaataaagacatttgccatg 396
               ||||||| || || ||||| ||||||
Sbjct: 7629991 gagcaacgatgaatacattggccatg 7630016



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                          
Query: 559     tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaac 617
               |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 7630689 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaac 7630747



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                           
Query: 241     tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 300
               ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 7629774 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 7629833

                            
Query: 301     agttgaatgaacc 313
               |||||||||||||
Sbjct: 7629834 agttgaatgaacc 7629846



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                        
Query: 499     ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 555
               |||||||| |||||||| ||||||||||| || || ||||| |||| ||| ||||||
Sbjct: 7630275 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 7630331



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>emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151024

 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Plus

                                                                         
Query: 397   attccaagcagttcaaacttctcatctatggagggggcattgaagctacggacaaactcc 456
             |||||||||||||||||||| |||||||| || ||||||||||||||||| || || |||
Sbjct: 17609 attccaagcagttcaaacttttcatctatcgatggggcattgaagctacgaacgaattcc 17668

                                                      
Query: 457   ccatactcagtaatgtcacgtttcaaccgtagcccaccact 497
             || |||||||| || |||||||||| ||||| |||||||||
Sbjct: 17669 ccgtactcagtgatatcacgtttcagccgtaacccaccact 17709



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                         
Query: 311   accgcaaagcatccttccggatgctgggggttccttcaaacaaggaagctagactttccg 370
             ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 17443 accgcaaggcatctttccggatactgggggttccttcaaataaggaagctagactttcag 17502

                                       
Query: 371   gagcaacaataaagacatttgccatg 396
             ||||||| || || ||||| ||||||
Sbjct: 17503 gagcaacgatgaatacattggccatg 17528



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                        
Query: 559   tcagtcaaaaaggactgtttgtttagaccttctagggcactgaatgcaacctcgagaac 617
             |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 18201 tcagtcaaaaaggactgtttattgagaccttctagagcactgaatgcaacctcgagaac 18259



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                         
Query: 241   tattcagacattatactgttaagcatcgaagcaatttttgctgtcttgtagtcatccctg 300
             ||||||| ||| |||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 17286 tattcagccatgatactgtttagcatggaagcgatttttgctgtcttatagtcgtccctg 17345

                          
Query: 301   agttgaatgaacc 313
             |||||||||||||
Sbjct: 17346 agttgaatgaacc 17358



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 499   ggactaaacgtgaacttttgccaatgattaagaaggcccttgtgcatgcggtttccc 555
             |||||||| |||||||| ||||||||||| || || ||||| |||| ||| ||||||
Sbjct: 17787 ggactaaatgtgaacttctgccaatgattgagtagccccttatgcaagcgatttccc 17843



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>gb|AC137821.22| Medicago truncatula clone mth2-15o11, complete sequence
          Length = 117225

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 433   gcattgaagctacggacaaactccccatactcagtaatgtcacgtttca 481
             |||||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 73050 gcattgaaactacgcacaaactctccatactcagtaatgtcacgcttca 73098



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                         
Query: 319   gcatccttccggatgctgggggttccttcaaacaaggaagctagactttccggagcaaca 378
             ||||| ||||| |||||||| || || |||||||| |  |  ||||| || |||||||||
Sbjct: 72846 gcatctttccgaatgctgggtgtaccctcaaacaaagttgaaagactctcaggagcaaca 72905

                             
Query: 379   ataaagacatttgcca 394
             || |||||||| ||||
Sbjct: 72906 atgaagacattggcca 72921



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>emb|BX927256.13| Zebrafish DNA sequence from clone CH211-272F14 in linkage group 5,
             complete sequence
          Length = 130184

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   ccttgaagtaaattttattca 246
             |||||||||||||||||||||
Sbjct: 55100 ccttgaagtaaattttattca 55080



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>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence
          Length = 156107

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 387   atttgccatgattccaagcag 407
             |||||||||||||||||||||
Sbjct: 57011 atttgccatgattccaagcag 56991



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>dbj|BS000180.1| Pan troglodytes chromosome 22 clone:RP43-184I13, map 22, complete
             sequences
          Length = 158703

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 231   aagtaaattttattcagacat 251
             |||||||||||||||||||||
Sbjct: 92558 aagtaaattttattcagacat 92538



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>gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosome 19, complete
             sequence
          Length = 206333

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 583   agaccttctagggcactgaa 602
             ||||||||||||||||||||
Sbjct: 37105 agaccttctagggcactgaa 37124



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>emb|CR628410.11| Zebrafish DNA sequence from clone CH211-198D23 in linkage group 23,
             complete sequence
          Length = 172610

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    agtttgctacaaggatttca 42
             ||||||||||||||||||||
Sbjct: 80480 agtttgctacaaggatttca 80461



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>gb|AC130548.3| Mus musculus BAC clone RP24-456F12 from chromosome 5, complete sequence
          Length = 170929

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    agaaacagaaaaacaaaggg 109
             ||||||||||||||||||||
Sbjct: 61302 agaaacagaaaaacaaaggg 61321



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>gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome 19, complete
            sequence
          Length = 165998

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 583  agaccttctagggcactgaa 602
            ||||||||||||||||||||
Sbjct: 6792 agaccttctagggcactgaa 6773



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>gb|AC135796.25| Medicago truncatula clone mth2-28b18, complete sequence
          Length = 118959

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   catcgcttgaaaattatcaa 225
             ||||||||||||||||||||
Sbjct: 94770 catcgcttgaaaattatcaa 94789



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>emb|CR352982.1| Gallus gallus finished cDNA, clone ChEST538k24
          Length = 875

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 atgaaccgcaaagcatcctt 326
           ||||||||||||||||||||
Sbjct: 420 atgaaccgcaaagcatcctt 401



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>gb|AC107078.4| Homo sapiens BAC clone RP11-582N16 from 2, complete sequence
          Length = 31946

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 227   cttgaagtaaattttattcagaca 250
             |||||||||||| |||||||||||
Sbjct: 25386 cttgaagtaaatattattcagaca 25409



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>gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, complete sequence
          Length = 193466

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    agaaacagaaaaacaaaggg 109
             ||||||||||||||||||||
Sbjct: 90867 agaaacagaaaaacaaaggg 90848



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>gb|AC153893.3| Mus musculus 10 BAC RP23-124O20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 228194

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    ttgtagtcatccctgagttg 305
              ||||||||||||||||||||
Sbjct: 173342 ttgtagtcatccctgagttg 173323



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>gb|AC161533.22| Mus musculus chromosome 3, clone RP23-55N2, complete sequence
          Length = 158774

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 374    caacaataaagacatttgccatga 397
              ||||||||||| ||||||||||||
Sbjct: 121827 caacaataaaggcatttgccatga 121804



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>gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, complete sequence
          Length = 187001

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 374    caacaataaagacatttgccatga 397
              ||||||||||| ||||||||||||
Sbjct: 184463 caacaataaaggcatttgccatga 184486


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,412,934
Number of Sequences: 3902068
Number of extensions: 5412934
Number of successful extensions: 102504
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102400
Number of HSP's gapped (non-prelim): 103
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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