ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9e21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FOXO1_HUMAN (Q12778) Forkhead box protein O1A (Forkhead in rhabd... 31 1.8
2FOXO1_MOUSE (Q9R1E0) Forkhead box protein O1A (Forkhead in rhabd... 29 5.2
3YAET_PHOLL (Q7N8N9) Outer membrane protein assembly factor yaeT ... 29 5.2
4CLD1_MOUSE (O88551) Claudin-1 28 8.9

>FOXO1_HUMAN (Q12778) Forkhead box protein O1A (Forkhead in rhabdomyosarcoma)|
          Length = 655

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 32  PSIKQTALHHIKMLSSPTSLIISCISRLGTAVQTSFTSRSAEPN 163
           P   +  L ++ +LSSPTSL +S  S  GT +Q +     A PN
Sbjct: 368 PENMENLLDNLNLLSSPTSLTVSTQSSPGTMMQQTPCYSFAPPN 411



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>FOXO1_MOUSE (Q9R1E0) Forkhead box protein O1A (Forkhead in rhabdomyosarcoma)|
          Length = 652

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 32  PSIKQTALHHIKMLSSPTSLIISCISRLGTAVQTSFTSRSAEPN 163
           P   +  L ++ +LSSPTSL +S  S  G+ +Q +     A PN
Sbjct: 365 PENMENLLDNLNLLSSPTSLTVSTQSSPGSMMQQTPCYSFAPPN 408



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>YAET_PHOLL (Q7N8N9) Outer membrane protein assembly factor yaeT precursor|
          Length = 797

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 231 IGDVFDKNIIRPLGRSTELIHYKLGSALLEVKLVWTAVPRREI 103
           IG+  D+ ++  + R  E  +Y +G     VK V T +PR  +
Sbjct: 121 IGEALDRTMLSNIERGLEDFYYSVGKYNASVKAVVTPLPRNRV 163



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>CLD1_MOUSE (O88551) Claudin-1|
          Length = 211

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 414 DRVVSQELSPLLPKN--YEYGMELYNGW 337
           +R+V +   PL P N  YE+G  L+ GW
Sbjct: 142 NRIVQEFYDPLTPINARYEFGQALFTGW 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,334,516
Number of Sequences: 219361
Number of extensions: 1344848
Number of successful extensions: 3495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3491
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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