Clone Name | rbags9e21 |
---|---|
Clone Library Name | barley_pub |
>emb|AL713860.12| Mouse DNA sequence from clone RP23-446K18 on chromosome 11 Contains the Ccl8 and Ccl1 genes for chemokine (C-C motif) ligand 8 and 1, complete sequence Length = 129489 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 209 tttttatcaaaaacatcaccaatg 232 |||||||||||||||||||||||| Sbjct: 115104 tttttatcaaaaacatcaccaatg 115081
>emb|AL713885.1|CNS07YP2 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 330D23 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 181075 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 209 tttttatcaaaaacatcaccaatg 232 |||||||||||||||||||||||| Sbjct: 54078 tttttatcaaaaacatcaccaatg 54055
>gb|AC131182.3| Homo sapiens BAC clone RP11-392B6 from 4, complete sequence Length = 101396 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 314 tctcaacctctgctgctgcttcacca 339 |||||||||||||||||| ||||||| Sbjct: 86470 tctcaacctctgctgctgtttcacca 86445
>emb|AL353818.1|ATF14L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F14L2 Length = 107027 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 tgatgtttttatcaaaaacat 224 ||||||||||||||||||||| Sbjct: 4382 tgatgtttttatcaaaaacat 4362
>emb|AL138641.2|ATT22K7 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7 Length = 82316 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 tgatgtttttatcaaaaacat 224 ||||||||||||||||||||| Sbjct: 78544 tgatgtttttatcaaaaacat 78524
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 236 cgacccggtgacaatgagcaccaac 260 |||||||||||| |||||||||||| Sbjct: 5625073 cgacccggtgaccatgagcaccaac 5625049
>ref|XM_474680.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2862 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 cttcaagatattgacttcaa 435 |||||||||||||||||||| Sbjct: 780 cttcaagatattgacttcaa 799
>gb|AC159416.1| Trypanosoma brucei chromosome 8 clone RPCI93-25E9, complete sequence Length = 150829 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaacaaaccgctctgcatca 60 |||||||||||||||||||| Sbjct: 5369 aaacaaaccgctctgcatca 5350
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaacaaaccgctctgcatca 60 |||||||||||||||||||| Sbjct: 5369 aaacaaaccgctctgcatca 5350
>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete sequence Length = 90387 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 caaaaacatcaccaatgcta 235 |||||||||||||||||||| Sbjct: 61926 caaaaacatcaccaatgcta 61907
>emb|Z79694.1|CEC15A11 Caenorhabditis elegans Cosmid C15A11, complete sequence Length = 41954 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaatgcagaataattttcca 20 |||||||||||||||||||| Sbjct: 12854 gaatgcagaataattttcca 12873
>gb|AC159149.10| Mus musculus 10 BAC RP23-56F17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 219585 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tgctctcatctcccacatcc 88 |||||||||||||||||||| Sbjct: 188323 tgctctcatctcccacatcc 188342
>emb|CR457484.9| Zebrafish DNA sequence from clone CH211-132F3 in linkage group 18, complete sequence Length = 169672 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 catcaaaatgctctcatctc 80 |||||||||||||||||||| Sbjct: 59302 catcaaaatgctctcatctc 59321
>gb|AC146553.12| Medicago truncatula clone mth2-9e24, complete sequence Length = 136675 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gctctgcatcacatcaaaat 69 |||||||||||||||||||| Sbjct: 85232 gctctgcatcacatcaaaat 85251
>gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, complete sequence Length = 177777 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gatgtttttatcaaaaacat 224 |||||||||||||||||||| Sbjct: 131592 gatgtttttatcaaaaacat 131611
>gb|AC023866.8| Homo sapiens chromosome 8, clone RP11-787D18, complete sequence Length = 180486 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gatgtttttatcaaaaacat 224 |||||||||||||||||||| Sbjct: 137990 gatgtttttatcaaaaacat 137971
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 cttcaagatattgacttcaa 435 |||||||||||||||||||| Sbjct: 5513325 cttcaagatattgacttcaa 5513344
>emb|BX831692.1|CNS09ZQK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH24ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1567 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 catctcccacatccttgatc 94 |||||||||||||||||||| Sbjct: 986 catctcccacatccttgatc 967
>gb|AC155938.6| Mus musculus 10 BAC RP24-421D7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 157047 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tgctctcatctcccacatcc 88 |||||||||||||||||||| Sbjct: 73126 tgctctcatctcccacatcc 73107
>gb|AC007743.3| Homo sapiens BAC clone RP11-481J13 from 2, complete sequence Length = 141836 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 tgctgctgcttcaccacccgttgt 347 ||||||| |||||||||||||||| Sbjct: 92628 tgctgctccttcaccacccgttgt 92651
>gb|AC084541.1|CBRG27D19 Caenorhabditis briggsae cosmid G27D19, complete sequence Length = 40961 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 tcaagatattgacttcaatg 437 |||||||||||||||||||| Sbjct: 34684 tcaagatattgacttcaatg 34665
>emb|BX004794.14| Zebrafish DNA sequence from clone DKEYP-79B10 in linkage group 12, complete sequence Length = 207058 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 aagtttcacctccagaagtg 152 |||||||||||||||||||| Sbjct: 126671 aagtttcacctccagaagtg 126652
>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence Length = 150283 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 cttcaagatattgacttcaa 435 |||||||||||||||||||| Sbjct: 67955 cttcaagatattgacttcaa 67974
>emb|AL670223.7| Mouse DNA sequence from clone RP23-29O24 on chromosome 4, complete sequence Length = 184644 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 cctgtctcaacctctgctgctgct 333 ||||||||| |||||||||||||| Sbjct: 164692 cctgtctcatcctctgctgctgct 164669 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,720,468 Number of Sequences: 3902068 Number of extensions: 4720468 Number of successful extensions: 95108 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95041 Number of HSP's gapped (non-prelim): 67 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)