ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9e21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL713860.12| Mouse DNA sequence from clone RP23-446K18 on ch... 48 0.026
2emb|AL713885.1|CNS07YP2 Mus musculus chromosome 11 region in the... 48 0.026
3gb|AC131182.3| Homo sapiens BAC clone RP11-392B6 from 4, complet... 44 0.40
4emb|AL353818.1|ATF14L2 Arabidopsis thaliana DNA chromosome 3, BA... 42 1.6
5emb|AL138641.2|ATT22K7 Arabidopsis thaliana DNA chromosome 3, BA... 42 1.6
6dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.6
7ref|XM_474680.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
8gb|AC159416.1| Trypanosoma brucei chromosome 8 clone RPCI93-25E9... 40 6.3
9gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 6.3
10gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genom... 40 6.3
11emb|Z79694.1|CEC15A11 Caenorhabditis elegans Cosmid C15A11, comp... 40 6.3
12gb|AC159149.10| Mus musculus 10 BAC RP23-56F17 (Roswell Park Can... 40 6.3
13emb|CR457484.9| Zebrafish DNA sequence from clone CH211-132F3 in... 40 6.3
14gb|AC146553.12| Medicago truncatula clone mth2-9e24, complete se... 40 6.3
15gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, com... 40 6.3
16gb|AC023866.8| Homo sapiens chromosome 8, clone RP11-787D18, com... 40 6.3
17dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
18emb|BX831692.1|CNS09ZQK Arabidopsis thaliana Full-length cDNA Co... 40 6.3
19gb|AC155938.6| Mus musculus 10 BAC RP24-421D7 (Roswell Park Canc... 40 6.3
20gb|AC007743.3| Homo sapiens BAC clone RP11-481J13 from 2, comple... 40 6.3
21gb|AC084541.1|CBRG27D19 Caenorhabditis briggsae cosmid G27D19, c... 40 6.3
22emb|BX004794.14| Zebrafish DNA sequence from clone DKEYP-79B10 i... 40 6.3
23emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
24emb|AL670223.7| Mouse DNA sequence from clone RP23-29O24 on chro... 40 6.3

>emb|AL713860.12| Mouse DNA sequence from clone RP23-446K18 on chromosome 11 Contains the
              Ccl8 and Ccl1 genes for chemokine (C-C motif) ligand 8 and
              1, complete sequence
          Length = 129489

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 209    tttttatcaaaaacatcaccaatg 232
              ||||||||||||||||||||||||
Sbjct: 115104 tttttatcaaaaacatcaccaatg 115081



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>emb|AL713885.1|CNS07YP2 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 330D23 of library Caltech CITB-BAC from chromosome
             11 of Mus musculus (mouse)
          Length = 181075

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 209   tttttatcaaaaacatcaccaatg 232
             ||||||||||||||||||||||||
Sbjct: 54078 tttttatcaaaaacatcaccaatg 54055



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>gb|AC131182.3| Homo sapiens BAC clone RP11-392B6 from 4, complete sequence
          Length = 101396

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 314   tctcaacctctgctgctgcttcacca 339
             |||||||||||||||||| |||||||
Sbjct: 86470 tctcaacctctgctgctgtttcacca 86445



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>emb|AL353818.1|ATF14L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F14L2
          Length = 107027

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 204  tgatgtttttatcaaaaacat 224
            |||||||||||||||||||||
Sbjct: 4382 tgatgtttttatcaaaaacat 4362



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>emb|AL138641.2|ATT22K7 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7
          Length = 82316

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   tgatgtttttatcaaaaacat 224
             |||||||||||||||||||||
Sbjct: 78544 tgatgtttttatcaaaaacat 78524



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 236     cgacccggtgacaatgagcaccaac 260
               |||||||||||| ||||||||||||
Sbjct: 5625073 cgacccggtgaccatgagcaccaac 5625049



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>ref|XM_474680.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2862

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 416 cttcaagatattgacttcaa 435
           ||||||||||||||||||||
Sbjct: 780 cttcaagatattgacttcaa 799



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>gb|AC159416.1| Trypanosoma brucei chromosome 8 clone RPCI93-25E9, complete sequence
          Length = 150829

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   aaacaaaccgctctgcatca 60
            ||||||||||||||||||||
Sbjct: 5369 aaacaaaccgctctgcatca 5350



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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   aaacaaaccgctctgcatca 60
            ||||||||||||||||||||
Sbjct: 5369 aaacaaaccgctctgcatca 5350



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>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete
             sequence
          Length = 90387

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   caaaaacatcaccaatgcta 235
             ||||||||||||||||||||
Sbjct: 61926 caaaaacatcaccaatgcta 61907



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>emb|Z79694.1|CEC15A11 Caenorhabditis elegans Cosmid C15A11, complete sequence
          Length = 41954

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gaatgcagaataattttcca 20
             ||||||||||||||||||||
Sbjct: 12854 gaatgcagaataattttcca 12873



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>gb|AC159149.10| Mus musculus 10 BAC RP23-56F17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 219585

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tgctctcatctcccacatcc 88
              ||||||||||||||||||||
Sbjct: 188323 tgctctcatctcccacatcc 188342



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>emb|CR457484.9| Zebrafish DNA sequence from clone CH211-132F3 in linkage group 18,
             complete sequence
          Length = 169672

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    catcaaaatgctctcatctc 80
             ||||||||||||||||||||
Sbjct: 59302 catcaaaatgctctcatctc 59321



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>gb|AC146553.12| Medicago truncatula clone mth2-9e24, complete sequence
          Length = 136675

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gctctgcatcacatcaaaat 69
             ||||||||||||||||||||
Sbjct: 85232 gctctgcatcacatcaaaat 85251



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>gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, complete sequence
          Length = 177777

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    gatgtttttatcaaaaacat 224
              ||||||||||||||||||||
Sbjct: 131592 gatgtttttatcaaaaacat 131611



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>gb|AC023866.8| Homo sapiens chromosome 8, clone RP11-787D18, complete sequence
          Length = 180486

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    gatgtttttatcaaaaacat 224
              ||||||||||||||||||||
Sbjct: 137990 gatgtttttatcaaaaacat 137971



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 416     cttcaagatattgacttcaa 435
               ||||||||||||||||||||
Sbjct: 5513325 cttcaagatattgacttcaa 5513344



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>emb|BX831692.1|CNS09ZQK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH24ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1567

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  catctcccacatccttgatc 94
           ||||||||||||||||||||
Sbjct: 986 catctcccacatccttgatc 967



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>gb|AC155938.6| Mus musculus 10 BAC RP24-421D7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 157047

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tgctctcatctcccacatcc 88
             ||||||||||||||||||||
Sbjct: 73126 tgctctcatctcccacatcc 73107



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>gb|AC007743.3| Homo sapiens BAC clone RP11-481J13 from 2, complete sequence
          Length = 141836

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 324   tgctgctgcttcaccacccgttgt 347
             ||||||| ||||||||||||||||
Sbjct: 92628 tgctgctccttcaccacccgttgt 92651



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>gb|AC084541.1|CBRG27D19 Caenorhabditis briggsae cosmid G27D19, complete sequence
          Length = 40961

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   tcaagatattgacttcaatg 437
             ||||||||||||||||||||
Sbjct: 34684 tcaagatattgacttcaatg 34665



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>emb|BX004794.14| Zebrafish DNA sequence from clone DKEYP-79B10 in linkage group 12,
              complete sequence
          Length = 207058

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    aagtttcacctccagaagtg 152
              ||||||||||||||||||||
Sbjct: 126671 aagtttcacctccagaagtg 126652



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>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01,
             complete sequence
          Length = 150283

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   cttcaagatattgacttcaa 435
             ||||||||||||||||||||
Sbjct: 67955 cttcaagatattgacttcaa 67974



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>emb|AL670223.7| Mouse DNA sequence from clone RP23-29O24 on chromosome 4, complete
              sequence
          Length = 184644

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 310    cctgtctcaacctctgctgctgct 333
              ||||||||| ||||||||||||||
Sbjct: 164692 cctgtctcatcctctgctgctgct 164669


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,720,468
Number of Sequences: 3902068
Number of extensions: 4720468
Number of successful extensions: 95108
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95041
Number of HSP's gapped (non-prelim): 67
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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