ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9d21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A) 41 0.006
2VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B) 39 0.028
3LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain L... 33 1.5
4MST2_DROHY (Q08696) Axoneme-associated protein mst101(2) 32 2.0
5VCL_THECC (Q43358) Vicilin precursor 32 3.4
6ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 30 7.6

>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)|
          Length = 605

 Score = 40.8 bits (94), Expect = 0.006
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -1

Query: 711 PGQGKEQCVQQCMRYGXNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQ-HHKVPARK 535
           P +  + C Q C +    L         E+   ++ +  D+    C  +CQ   + P RK
Sbjct: 80  PQRRYQDCRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPERK 139

Query: 534 KQCVDECHRREHHHPSRAACERKCSHWRDPTRKE 433
           +QCV EC  +    P +   E K   WR+   +E
Sbjct: 140 QQCVKECREQYQEDPWKGERENK---WREEEEEE 170



 Score = 30.8 bits (68), Expect = 5.8
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -1

Query: 576 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 418
           C   CQ  +   R   ++ C ++  +++   P +    C+++C  W++  P RK++CV+ 
Sbjct: 87  CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145

Query: 417 C 415
           C
Sbjct: 146 C 146



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>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)|
          Length = 588

 Score = 38.5 bits (88), Expect = 0.028
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = -1

Query: 711 PGQGKEQCVQQCMRYGXNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKK 532
           P +  E+C Q+C +             ++R   E+ +   Q  +   H  Q  + P RK+
Sbjct: 83  PQRRYEECQQECRQQEERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQ 142

Query: 531 QCVDECHRREHHHPSRAACERK 466
           QCV EC  R   +P R   E +
Sbjct: 143 QCVRECRERYQENPWRREREEE 164



 Score = 30.0 bits (66), Expect = 10.0
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
 Frame = -1

Query: 699 KEQCVQQCM-RYGXNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCV 523
           ++QC + C  +YG            ++      E   +  + C  +C+  +   ++ QC 
Sbjct: 58  QQQCEESCKSQYGEK----------DQQQRHRPEDPQRRYEECQQECRQQE-ERQRPQCQ 106

Query: 522 DECHRREHHHPSRAA-----CERKCSHWRD-PTRKERCVQTC 415
             C +R      ++      C++ C      P RK++CV+ C
Sbjct: 107 QRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVREC 148



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>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)|
          Length = 367

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 55  SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 231
           S CG+H   T+ ++  KG  +H A F      +C  CK  +     FA++  K   R +
Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210



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>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)|
          Length = 1391

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -1

Query: 576  CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 409
            C+ + +  K  A KK+C +E  +RE     +  C       ++ T K++C +   +
Sbjct: 1112 CEERAKKEKEAAEKKRC-EEAAKREKEAAEKKKCAEAAKKEKEATEKQKCAEAAKK 1166



 Score = 32.3 bits (72), Expect = 2.0
 Identities = 19/92 (20%), Positives = 36/92 (39%)
 Frame = -1

Query: 684  QQCMRYGXNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRR 505
            +QC      L         E    +E E  ++    C+ + +  K  A KKQC +E  ++
Sbjct: 1062 KQCEERAKKLKEAAEKKQCEERAKKEKEAAEKKQ--CEERAKKLKEAAEKKQC-EERAKK 1118

Query: 504  EHHHPSRAACERKCSHWRDPTRKERCVQTCMR 409
            E     +  CE      ++   K++C +   +
Sbjct: 1119 EKEAAEKKRCEEAAKREKEAAEKKKCAEAAKK 1150



 Score = 30.0 bits (66), Expect = 10.0
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = -1

Query: 615 AEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRK 436
           A + E +      C+   ++ K  A KK+C  E  ++E     R  CE      +    K
Sbjct: 418 AAKKEKEAAERKKCEELAKNIKKAAEKKKC-KEAAKKEKEAAERKKCEELAKKIKKAAEK 476

Query: 435 ERCVQTCMR 409
           ++C +T  +
Sbjct: 477 KKCEETAKK 485



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>VCL_THECC (Q43358) Vicilin precursor|
          Length = 525

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
 Frame = -1

Query: 711 PGQGKEQCVQQCMRYGXNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKC---------- 562
           P Q  EQC ++C                     E    +++  + C+ +C          
Sbjct: 38  PRQQYEQCQRRC---------------------ESEATEEREQEQCEQRCEREYKEQQRQ 76

Query: 561 QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKER 430
           Q  ++  + +QC   C  ++     +  C+RKC  W     +ER
Sbjct: 77  QEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC--WEQYKEQER 118



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>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
           (Metalloprotease and disintegrin dentritic antigen
           marker) (MADDAM)
          Length = 956

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 98  KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 253
           +E E SS+ LS+ RGI      +S  S+++ PLP    + +   IYRS + +
Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,198,804
Number of Sequences: 219361
Number of extensions: 1713282
Number of successful extensions: 4634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4621
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 9839353125
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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