ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9d18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clon... 387 e-104
2dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 387 e-104
3dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 387 e-104
4gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence 365 1e-97
5gb|AY105451.1| Zea mays PCO122767 mRNA sequence 365 1e-97
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
7dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
8gb|AY279311.1| Malus x domestica ATP-dependent Clp protease prot... 54 6e-04
9gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, co... 46 0.15
10gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Canc... 46 0.15
11gb|AY665221.1| Saimiri boliviensis reticulon 1 mRNA, partial cds 42 2.3
12ref|NM_101113.2| Arabidopsis thaliana CLPR2; endopeptidase Clp A... 42 2.3
13emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chr... 42 2.3
14tpg|BK001692.1| TPA: TPA_inf: Ateles belzebuth chamek RTN1-Aw (R... 42 2.3
15gb|AY081641.1| Arabidopsis thaliana similar to nClpP2 dbj|BAA820... 42 2.3
16gb|AY062770.1| Arabidopsis thaliana similar to nClpP2 (At1g12410... 42 2.3
17gb|AY057617.1| Arabidopsis thaliana At1g12410/F5O11_7 mRNA, comp... 42 2.3
18emb|BX813571.1|CNS0AAJF Arabidopsis thaliana Full-length cDNA Co... 42 2.3
19emb|BX841886.1|CNS09Y1Z Arabidopsis thaliana Full-length cDNA Co... 42 2.3
20emb|BX842500.1|CNS0ABM0 Arabidopsis thaliana Full-length cDNA Co... 42 2.3
21gb|AF029167.1|AF029167 Ateles paniscus chamek neuroendocrine-spe... 42 2.3
22dbj|AB022327.1| Arabidopsis thaliana mRNA for nClpP2 (nuclear en... 42 2.3
23gb|AC161286.2| Pan troglodytes BAC clone CH251-332L6 from chromo... 40 9.0
24gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromo... 40 9.0
25gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome... 40 9.0
26emb|AL356215.11| Human DNA sequence from clone RP4-607I7 on chro... 40 9.0
27gb|AC091535.2| Takifugu rubripes clone 241F4, complete sequence 40 9.0
28gb|AC134473.4| Mus musculus BAC clone RP23-190G18 from chromosom... 40 9.0
29gb|AC164439.4| Mus musculus BAC clone RP23-31B24 from chromosome... 40 9.0
30gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 9.0
31gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromo... 40 9.0
32gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complet... 40 9.0
33dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 9.0
34emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 9.0
35emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-9... 40 9.0
36gb|AC009994.10| Homo sapiens chromosome 17, clone RP11-87N3, com... 40 9.0 
>dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G04, full
           insert sequence
          Length = 1133

 Score =  387 bits (195), Expect = e-104
 Identities = 333/379 (87%)
 Strand = Plus / Minus

                                                                       
Query: 284 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 343
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817

                                                                       
Query: 344 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 403
           ||||| || ||||||||||||  ||| || |  || || |||| ||| ||||||| ||||
Sbjct: 816 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 757

                                                                       
Query: 404 cccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttgat 463
           || ||||||||||  | |||||  ||||||||||||||||||| | ||||||| |||| |
Sbjct: 756 cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttgct 697

                                                                       
Query: 464 tcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaaca 523
           || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  
Sbjct: 696 tcattttctatatcatcagcctgccctcgagctgctccagcaggtgactgaagtgaaatc 637

                                                                       
Query: 524 cggcaaagaggcataccagtacgtgaacccttttgaccagctgcaagaatgaatcctgcc 583
           ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 636 cggcaaagaggcatacccgtacgtgaacccttttcaccagctgcaagaataaatcctgcc 577

                                                                       
Query: 584 aagttgaatgcaaagcccaggcaatgggtaccaattggactctttaggcttagcatggta 643
           |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 576 aagttgaatgcaaagcccaggcaatgagtaccaataggactttttaggcttagcattgta 517

                              
Query: 644 tcatataacgccatgcatg 662
           |||||||| ||||||||||
Sbjct: 516 tcatataatgccatgcatg 498



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 226 catctactagccgagtcccagattccgcagttccttctt 264
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
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>dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L17, full
           insert sequence
          Length = 1243

 Score =  387 bits (195), Expect = e-104
 Identities = 333/379 (87%)
 Strand = Plus / Minus

                                                                       
Query: 284 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 343
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 894 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 835

                                                                       
Query: 344 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 403
           ||||| || ||||||||||||  ||| || |  || || |||| ||| ||||||| ||||
Sbjct: 834 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 775

                                                                       
Query: 404 cccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttgat 463
           || ||||||||||  | |||||  ||||||||||||||||||| | ||||||| |||| |
Sbjct: 774 cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttgct 715

                                                                       
Query: 464 tcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaaca 523
           || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  
Sbjct: 714 tcattttctatatcatcagcctgccctcgagctgctccagcaggtgactgaagtgaaatc 655

                                                                       
Query: 524 cggcaaagaggcataccagtacgtgaacccttttgaccagctgcaagaatgaatcctgcc 583
           ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 654 cggcaaagaggcatacccgtacgtgaacccttttcaccagctgcaagaataaatcctgcc 595

                                                                       
Query: 584 aagttgaatgcaaagcccaggcaatgggtaccaattggactctttaggcttagcatggta 643
           |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 594 aagttgaatgcaaagcccaggcaatgagtaccaataggactttttaggcttagcattgta 535

                              
Query: 644 tcatataacgccatgcatg 662
           |||||||| ||||||||||
Sbjct: 534 tcatataatgccatgcatg 516



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 226 catctactagccgagtcccagattccgcagttccttctt 264
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 946 catctactagccaagtcccagattacgtagatccttctt 908
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>dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A01, full
           insert sequence
          Length = 1133

 Score =  387 bits (195), Expect = e-104
 Identities = 333/379 (87%)
 Strand = Plus / Minus

                                                                       
Query: 284 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 343
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817

                                                                       
Query: 344 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 403
           ||||| || ||||||||||||  ||| || |  || || |||| ||| ||||||| ||||
Sbjct: 816 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 757

                                                                       
Query: 404 cccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttgat 463
           || ||||||||||  | |||||  ||||||||||||||||||| | ||||||| |||| |
Sbjct: 756 cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttgct 697

                                                                       
Query: 464 tcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaaca 523
           || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  
Sbjct: 696 tcattttctatatcatcagcctgccctcgagctgctccagcaggtgactgaagtgaaatc 637

                                                                       
Query: 524 cggcaaagaggcataccagtacgtgaacccttttgaccagctgcaagaatgaatcctgcc 583
           ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 636 cggcaaagaggcatacccgtacgtgaacccttttcaccagctgcaagaataaatcctgcc 577

                                                                       
Query: 584 aagttgaatgcaaagcccaggcaatgggtaccaattggactctttaggcttagcatggta 643
           |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 576 aagttgaatgcaaagcccaggcaatgagtaccaataggactttttaggcttagcattgta 517

                              
Query: 644 tcatataacgccatgcatg 662
           |||||||| ||||||||||
Sbjct: 516 tcatataatgccatgcatg 498



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 226 catctactagccgagtcccagattccgcagttccttctt 264
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
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>gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence
          Length = 1252

 Score =  365 bits (184), Expect = 1e-97
 Identities = 322/368 (87%)
 Strand = Plus / Minus

                                                                       
Query: 283 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 342
           ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 880 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 821

                                                                       
Query: 343 tccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatg 402
            |||||||||||||||||||||  ||| |||| |||||| || | |||||| ||||||||
Sbjct: 820 cccttcggcgtcgaagcgcttcaccctagacaggtcctcatggatcttctcgacagaatg 761

                                                                       
Query: 403 acccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttga 462
            || |||||| | || ||||||||||| |||||||||||||| ||  |||| ||||||| 
Sbjct: 760 gcctgtgtgccccgcgagcttgccatagagatagttcttgatgcggataagctcgtttgc 701

                                                                       
Query: 463 ttcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaac 522
           ||||||||||||||| |||||||| ||||||||||| || |||||||| || ||||||| 
Sbjct: 700 ttcgttttctatatcgtcagcctgtcctcgagctgctccggcaggtgattggagtgaaat 641

                                                                       
Query: 523 acggcaaagaggcataccagtacgtgaacccttttgaccagctgcaagaatgaatcctgc 582
            ||||| |||||||||||||| ||||||||||||| ||| |||||||| |||||||||||
Sbjct: 640 ccggcatagaggcataccagtgcgtgaacccttttcaccggctgcaaggatgaatcctgc 581

                                                                       
Query: 583 caagttgaatgcaaagcccaggcaatgggtaccaattggactctttaggcttagcatggt 642
           || ||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||||||
Sbjct: 580 caggttgaatgcaaagcccaagcagtgagtgccaataggactttttagacttagcatggt 521

                   
Query: 643 atcatata 650
           ||||||||
Sbjct: 520 atcatata 513
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>gb|AY105451.1| Zea mays PCO122767 mRNA sequence
          Length = 709

 Score =  365 bits (184), Expect = 1e-97
 Identities = 322/368 (87%)
 Strand = Plus / Minus

                                                                       
Query: 283 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 342
           ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 493 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 434

                                                                       
Query: 343 tccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatg 402
            |||||||||||||||||||||  ||| |||| |||||| || | |||||| ||||||||
Sbjct: 433 cccttcggcgtcgaagcgcttcaccctagacaggtcctcatggatcttctcgacagaatg 374

                                                                       
Query: 403 acccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttga 462
            || |||||| | || ||||||||||| |||||||||||||| ||  |||| ||||||| 
Sbjct: 373 gcctgtgtgccccgcgagcttgccatagagatagttcttgatgcggataagctcgtttgc 314

                                                                       
Query: 463 ttcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaac 522
           ||||||||||||||| |||||||| ||||||||||| || |||||||| || ||||||| 
Sbjct: 313 ttcgttttctatatcgtcagcctgtcctcgagctgctccggcaggtgattggagtgaaat 254

                                                                       
Query: 523 acggcaaagaggcataccagtacgtgaacccttttgaccagctgcaagaatgaatcctgc 582
            ||||| |||||||||||||| ||||||||||||| ||| |||||||| |||||||||||
Sbjct: 253 ccggcatagaggcataccagtgcgtgaacccttttcaccggctgcaaggatgaatcctgc 194

                                                                       
Query: 583 caagttgaatgcaaagcccaggcaatgggtaccaattggactctttaggcttagcatggt 642
           || ||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||||||
Sbjct: 193 caggttgaatgcaaagcccaagcagtgagtgccaataggactttttagacttagcatggt 134

                   
Query: 643 atcatata 650
           ||||||||
Sbjct: 133 atcatata 126
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  165 bits (83), Expect = 2e-37
 Identities = 104/111 (93%)
 Strand = Plus / Minus

                                                                           
Query: 552     ccttttgaccagctgcaagaatgaatcctgccaagttgaatgcaaagcccaggcaatggg 611
               |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 1951191 ccttttcaccagctgcaagaataaatcctgccaagttgaatgcaaagcccaggcaatgag 1951132

                                                                  
Query: 612     taccaattggactctttaggcttagcatggtatcatataacgccatgcatg 662
               ||||||| ||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 1951131 taccaataggactttttaggcttagcattgtatcatataatgccatgcatg 1951081



 Score =  105 bits (53), Expect = 2e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                           
Query: 483     cctggcctcgagctgccccagcaggtgactgaagtgaaacacggcaaagaggcataccag 542
               |||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||||| |
Sbjct: 1951351 cctgccctcgagctgctccagcaggtgactgaagtgaaatccggcaaagaggcatacccg 1951292

                            
Query: 543     tacgtgaaccctt 555
               |||||||||||||
Sbjct: 1951291 tacgtgaaccctt 1951279



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                           
Query: 386     accttctcaacagaatgacccgtgtgctctgctagcttgccataaagatagttcttgatc 445
               ||||| ||||||| |||||| ||||||||||  | |||||  ||||||||||||||||||
Sbjct: 1951551 accttatcaacaggatgacctgtgtgctctgacaacttgctgtaaagatagttcttgatc 1951492

                                                        
Query: 446     cgattaagttcgtttgattcgttttctatatcatcagcctg 486
               | | ||||||| |||| ||| ||||||||||||||||||||
Sbjct: 1951491 ctaataagttcatttgcttcattttctatatcatcagcctg 1951451



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                           
Query: 284     ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 343
               |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 1951928 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 1951869

                                    
Query: 344     ccttcggcgtcgaagcgcttc 364
               ||||| || ||||||||||||
Sbjct: 1951868 ccttcagcatcgaagcgcttc 1951848



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 226     catctactagccgagtcccagattccgcagttccttctt 264
               |||||||||||| ||||||||||| || || ||||||||
Sbjct: 1951980 catctactagccaagtcccagattacgtagatccttctt 1951942
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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0548D03
          Length = 156709

 Score =  165 bits (83), Expect = 2e-37
 Identities = 104/111 (93%)
 Strand = Plus / Minus

                                                                         
Query: 552   ccttttgaccagctgcaagaatgaatcctgccaagttgaatgcaaagcccaggcaatggg 611
             |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 79971 ccttttcaccagctgcaagaataaatcctgccaagttgaatgcaaagcccaggcaatgag 79912

                                                                
Query: 612   taccaattggactctttaggcttagcatggtatcatataacgccatgcatg 662
             ||||||| ||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 79911 taccaataggactttttaggcttagcattgtatcatataatgccatgcatg 79861



 Score =  105 bits (53), Expect = 2e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                         
Query: 483   cctggcctcgagctgccccagcaggtgactgaagtgaaacacggcaaagaggcataccag 542
             |||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||||| |
Sbjct: 80131 cctgccctcgagctgctccagcaggtgactgaagtgaaatccggcaaagaggcatacccg 80072

                          
Query: 543   tacgtgaaccctt 555
             |||||||||||||
Sbjct: 80071 tacgtgaaccctt 80059



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                         
Query: 386   accttctcaacagaatgacccgtgtgctctgctagcttgccataaagatagttcttgatc 445
             ||||| ||||||| |||||| ||||||||||  | |||||  ||||||||||||||||||
Sbjct: 80331 accttatcaacaggatgacctgtgtgctctgacaacttgctgtaaagatagttcttgatc 80272

                                                      
Query: 446   cgattaagttcgtttgattcgttttctatatcatcagcctg 486
             | | ||||||| |||| ||| ||||||||||||||||||||
Sbjct: 80271 ctaataagttcatttgcttcattttctatatcatcagcctg 80231



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                         
Query: 284   ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 343
             |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 80708 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 80649

                                  
Query: 344   ccttcggcgtcgaagcgcttc 364
             ||||| || ||||||||||||
Sbjct: 80648 ccttcagcatcgaagcgcttc 80628



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 226   catctactagccgagtcccagattccgcagttccttctt 264
             |||||||||||| ||||||||||| || || ||||||||
Sbjct: 80760 catctactagccaagtcccagattacgtagatccttctt 80722
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>gb|AY279311.1| Malus x domestica ATP-dependent Clp protease proteolytic subunit
           mRNA, partial cds
          Length = 364

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 451 aagttcgtttgattcgttttctatatcatcagcctggcctcgagctgccccagcaggtga 510
           |||||| |||| ||| |||| ||||||||||||||| || ||||| ||||| ||||| ||
Sbjct: 162 aagttcatttgcttcattttgtatatcatcagcctgaccacgagcagccccggcaggaga 103

              
Query: 511 ctg 513
           |||
Sbjct: 102 ctg 100
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>gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, complete sequence
          Length = 154129

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 466    gttttctatatcatcagcctggc 488
              |||||||||||||||||||||||
Sbjct: 148686 gttttctatatcatcagcctggc 148708
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>gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203488

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 466    gttttctatatcatcagcctggc 488
              |||||||||||||||||||||||
Sbjct: 143790 gttttctatatcatcagcctggc 143768
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>gb|AY665221.1| Saimiri boliviensis reticulon 1 mRNA, partial cds
          Length = 263

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 480 cagcctggcctcgagctgccc 500
           |||||||||||||||||||||
Sbjct: 242 cagcctggcctcgagctgccc 262
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>ref|NM_101113.2| Arabidopsis thaliana CLPR2; endopeptidase Clp AT1G12410 (CLPR2)
           mRNA, complete cds
          Length = 1062

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 473 atatcatcagcctggcctcgagctgccccagcaggtgactg 513
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 679 atatcatcagcctgaccacgggctgcaccagctggtgactg 639
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>emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chromosome 9 Contains part
             of a novel gene (FLJ20276), complete sequence
          Length = 64981

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 110   caacagattaaatgacatacatcca 134
             |||||||||||||||||| ||||||
Sbjct: 28635 caacagattaaatgacatccatcca 28659
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>tpg|BK001692.1| TPA: TPA_inf: Ateles belzebuth chamek RTN1-Aw (RTN1) mRNA, partial
           cds; alternatively spliced
          Length = 263

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 480 cagcctggcctcgagctgccc 500
           |||||||||||||||||||||
Sbjct: 242 cagcctggcctcgagctgccc 262
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>gb|AY081641.1| Arabidopsis thaliana similar to nClpP2 dbj|BAA82066.1 (At1g12410)
           mRNA, complete cds
          Length = 871

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 473 atatcatcagcctggcctcgagctgccccagcaggtgactg 513
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 617 atatcatcagcctgaccacgggctgcaccagctggtgactg 577
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>gb|AY062770.1| Arabidopsis thaliana similar to nClpP2 (At1g12410; F5O11.13) mRNA,
           complete cds
          Length = 968

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 473 atatcatcagcctggcctcgagctgccccagcaggtgactg 513
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 664 atatcatcagcctgaccacgggctgcaccagctggtgactg 624
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>gb|AY057617.1| Arabidopsis thaliana At1g12410/F5O11_7 mRNA, complete cds
          Length = 994

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 473 atatcatcagcctggcctcgagctgccccagcaggtgactg 513
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 675 atatcatcagcctgaccacgggctgcaccagctggtgactg 635
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>emb|BX813571.1|CNS0AAJF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB24ZH11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 964

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 473 atatcatcagcctggcctcgagctgccccagcaggtgactg 513
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 617 atatcatcagcctgaccacgggctgcaccagctggtgactg 577
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>emb|BX841886.1|CNS09Y1Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL12ZA05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1001

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 473 atatcatcagcctggcctcgagctgccccagcaggtgactg 513
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 654 atatcatcagcctgaccacgggctgcaccagctggtgactg 614
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>emb|BX842500.1|CNS0ABM0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH3ZD08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 708

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 473 atatcatcagcctggcctcgagctgccccagcaggtgactg 513
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 401 atatcatcagcctgaccacgggctgcaccagctggtgactg 361
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>gb|AF029167.1|AF029167 Ateles paniscus chamek neuroendocrine-specific protein (NSP) gene,
           partial cds
          Length = 263

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 480 cagcctggcctcgagctgccc 500
           |||||||||||||||||||||
Sbjct: 242 cagcctggcctcgagctgccc 262
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>dbj|AB022327.1| Arabidopsis thaliana mRNA for nClpP2 (nuclear encoded ClpP2),
           complete cds
          Length = 999

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 473 atatcatcagcctggcctcgagctgccccagcaggtgactg 513
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 655 atatcatcagcctgaccacgggctgcaccagctggtgactg 615
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>gb|AC161286.2| Pan troglodytes BAC clone CH251-332L6 from chromosome 7, complete
              sequence
          Length = 172473

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     gtacatatgaaagaacagag 43
              ||||||||||||||||||||
Sbjct: 153229 gtacatatgaaagaacagag 153248
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>gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromosome 7, complete
             sequence
          Length = 217746

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gtacatatgaaagaacagag 43
             ||||||||||||||||||||
Sbjct: 16612 gtacatatgaaagaacagag 16631
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>gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome 7, complete sequence
          Length = 178643

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 24    gtacatatgaaagaacagagaaga 47
             ||||| ||||||||||||||||||
Sbjct: 66718 gtacaaatgaaagaacagagaaga 66695
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>emb|AL356215.11| Human DNA sequence from clone RP4-607I7 on chromosome 11p11.2-12
             Contains the start of the CD44 (CD44 antigen (homing
             function andnIndian blood group system)) gene, ESTs, STSs,
             GSSs and a CpG island, complete sequence
          Length = 150533

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 480   cagcctggcctcgagctgccccag 503
             |||||||||||| |||||||||||
Sbjct: 65325 cagcctggcctcaagctgccccag 65302
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>gb|AC091535.2| Takifugu rubripes clone 241F4, complete sequence
          Length = 71409

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 500   ccagcaggtgactgaagtga 519
             ||||||||||||||||||||
Sbjct: 66350 ccagcaggtgactgaagtga 66331
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>gb|AC134473.4| Mus musculus BAC clone RP23-190G18 from chromosome 3, complete sequence
          Length = 212795

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 592    tgcaaagcccaggcaatggg 611
              ||||||||||||||||||||
Sbjct: 116148 tgcaaagcccaggcaatggg 116167
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>gb|AC164439.4| Mus musculus BAC clone RP23-31B24 from chromosome 3, complete sequence
          Length = 206717

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    tgcaaagcccaggcaatggg 611
              ||||||||||||||||||||
Sbjct: 206472 tgcaaagcccaggcaatggg 206453
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 320     tcgatgatcccgtactccagggct 343
               |||| |||||||||||||||||||
Sbjct: 2015193 tcgaggatcccgtactccagggct 2015170
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>gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromosome 7, complete
             sequence
          Length = 193048

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gtacatatgaaagaacagag 43
             ||||||||||||||||||||
Sbjct: 83471 gtacatatgaaagaacagag 83490
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>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence
          Length = 164706

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 575    aatcctgccaagttgaatgc 594
              ||||||||||||||||||||
Sbjct: 159814 aatcctgccaagttgaatgc 159795
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     ggccggtggtcgagccgccc 286
               ||||||||||||||||||||
Sbjct: 5922373 ggccggtggtcgagccgccc 5922392
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     aagcgcttcgacctggacaa 375
               ||||||||||||||||||||
Sbjct: 3943555 aagcgcttcgacctggacaa 3943574
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>emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-909M7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200540

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 568    aagaatgaatcctgccaagt 587
              ||||||||||||||||||||
Sbjct: 122357 aagaatgaatcctgccaagt 122338
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>gb|AC009994.10| Homo sapiens chromosome 17, clone RP11-87N3, complete sequence
          Length = 188552

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   tcagcctggcctcgagctgc 498
             ||||||||||||||||||||
Sbjct: 90609 tcagcctggcctcgagctgc 90590


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,471,952
Number of Sequences: 3902068
Number of extensions: 4471952
Number of successful extensions: 81393
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81182
Number of HSP's gapped (non-prelim): 208
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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