>SWF1_ASPFU (Q4WN54) Palmitoyltransferase swf1 (EC 2.3.1.-)|
          Length = 379

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 14/50 (28%), Positives = 30/50 (60%)
 Frame = +1

Query: 421 WQTNTADGDIYDLRGSLLQSRKTMSDQEEHQQKCKSWELTKSQVLFLTDG 570
           W+ + ADG ++    S +   ++ SD++   Q+  +W ++ +Q+L +TDG
Sbjct: 268 WKEDVADGLVFKSTRSEIYGNQSHSDEDTPAQR--TWPVSSNQILVITDG 315

>CPSF2_ARATH (Q9LKF9) Cleavage and polyadenylation specificity factor, 100 kDa|
           subunit (CPSF 100 kDa subunit)
          Length = 739

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = -3

Query: 159 DVMKFQLQLSEKLMSSVILKKVSQNK 82
           D+  +++QLSEKLMS+VI KK+  ++
Sbjct: 604 DLCAYKVQLSEKLMSNVIFKKLGDSE 629

>BFA1_YEAST (P47113) Mitotic check point protein BFA1 (Cell cycle arrest|
           protein BFA1)
          Length = 574

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 385 SGVIYQTHTVVAWQTNTADGDIYDLRGSLLQSRKTMSDQEEHQQKCKSWELTKSQVLFLT 564
           +G ++   T   W    AD D  D+     Q  + ++D +E Q K   ++        L 
Sbjct: 60  TGTVFSNSTSAFWSNKQADDD-QDMEVD--QDDEFLNDFQEFQNKKDDFDDAIKTNFHLR 116

Query: 565 DGCKMGPWK 591
           +GC+ GP+K
Sbjct: 117 NGCRTGPFK 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,157,129
Number of Sequences: 219361
Number of extensions: 2202444
Number of successful extensions: 3866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3864
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)