Clone Name | rbah63p23 |
---|---|
Clone Library Name | barley_pub |
>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit Length = 1834 Score = 852 bits (430), Expect = 0.0 Identities = 545/580 (93%), Gaps = 14/580 (2%) Strand = Plus / Minus Query: 52 ttcagatcaggcgaggaaggttaccgttcgattcgcaaaaatggcaatcctactct---- 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1801 ttcagatcaggcgaggaaggttaccgttcgattcgcaaaaatggcaatcctactcttact 1742 Query: 108 --agacctttttcactttcagttgatctcaaccaaaattctactgcttggcctgaactga 165 |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1741 ctagaccttt--cactttcagttgatctcaaccgaaattctactgcttggcctgaactga 1684 Query: 166 agcatctaaaaaacacggacgaggcctgaagag--ctttacag---gctcgatcagacgg 220 |||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||| Sbjct: 1683 ggcatctaaaaaa-acggaggaggcctgaagagagctttacatacagctcgatcagacgg 1625 Query: 221 agagctgcccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacga 280 |||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||| Sbjct: 1624 agagctgcccctccgctggctcggcgaccttgggcttgggcttgggcttctcgacgacga 1565 Query: 281 tcgcttgcgtggtgaggaccattccggacaccgaggcagcgttctggagcgcgcatctcg 340 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1564 tcgcttgcgtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcg 1505 Query: 341 ttaccttggcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcg 400 | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct: 1504 tcaccttggcggggtcgatgacgcccgactcgatcaggttctcgtacttgtcggtcattg 1445 Query: 401 cgttgtaacccatctcccactcgctatccttgatcttctcgatcacaacttccccttcca 460 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 1444 cgttgtaacccatctcccactcgctctccttgatcttctcgatcacaacctccccttcca 1385 Query: 461 ctncagcgttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcag 520 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 ctccggcgttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcag 1325 Query: 521 caccaaggcgctcgtcgtggtcttcaattgtttctttgatcgcagggacataggtagata 580 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 1324 caccaaggcgctcgtcgtggtcttcgattgtttctttgatcgcagggacataggtagaca 1265 Query: 581 ggtgcacatatgccgcaccaccaccgggaacaatgccctc 620 |||||||||| ||||| ||||||||||||||||||||||| Sbjct: 1264 ggtgcacatacgccgcgccaccaccgggaacaatgccctc 1225
>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full insert sequence Length = 2070 Score = 234 bits (118), Expect = 3e-58 Identities = 306/369 (82%) Strand = Plus / Minus Query: 252 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 311 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1785 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1726 Query: 312 cgaggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 |||||| || |||||||||||||||||||| ||||| || ||||| || ||||||| ||| Sbjct: 1725 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1666 Query: 372 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 431 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 1665 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1606 Query: 432 gatcttctcgatcacaacttccccttccactncagcgttgttggcgatcagcgatgccgg 491 ||||||||| | || ||||||||||||||| |||| |||| ||| ||||| || || || Sbjct: 1605 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 1546 Query: 492 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 551 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 1545 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 1486 Query: 552 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 611 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 1485 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 1426 Query: 612 aatgccctc 620 ||||||||| Sbjct: 1425 aatgccctc 1417
>dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D06, full insert sequence Length = 1119 Score = 234 bits (118), Expect = 3e-58 Identities = 306/369 (82%) Strand = Plus / Minus Query: 252 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 311 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 854 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 795 Query: 312 cgaggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 |||||| || |||||||||||||||||||| ||||| || ||||| || ||||||| ||| Sbjct: 794 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 735 Query: 372 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 431 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 734 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 675 Query: 432 gatcttctcgatcacaacttccccttccactncagcgttgttggcgatcagcgatgccgg 491 ||||||||| | || ||||||||||||||| |||| |||| ||| ||||| || || || Sbjct: 674 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 615 Query: 492 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 551 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 614 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 555 Query: 552 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 611 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 554 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 495 Query: 612 aatgccctc 620 ||||||||| Sbjct: 494 aatgccctc 486
>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full insert sequence Length = 1985 Score = 234 bits (118), Expect = 3e-58 Identities = 306/369 (82%) Strand = Plus / Minus Query: 252 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 311 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1783 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1724 Query: 312 cgaggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 |||||| || |||||||||||||||||||| ||||| || ||||| || ||||||| ||| Sbjct: 1723 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1664 Query: 372 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 431 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 1663 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1604 Query: 432 gatcttctcgatcacaacttccccttccactncagcgttgttggcgatcagcgatgccgg 491 ||||||||| | || ||||||||||||||| |||| |||| ||| ||||| || || || Sbjct: 1603 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 1544 Query: 492 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 551 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 1543 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 1484 Query: 552 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 611 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 1483 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 1424 Query: 612 aatgccctc 620 ||||||||| Sbjct: 1423 aatgccctc 1415
>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence Length = 2106 Score = 234 bits (118), Expect = 3e-58 Identities = 325/393 (82%), Gaps = 1/393 (0%) Strand = Plus / Minus Query: 229 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 288 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1812 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1753 Query: 289 gtggtgaggaccattccggacaccgaggcagcgttctggagcgcgcatctcgttaccttg 348 ||||| ||||||||||| | || ||||| || ||||||||||| || || || |||||| Sbjct: 1752 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 1693 Query: 349 gcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcgcgttgtaa 408 || |||||||| ||||| | ||| |||||||||||||||||||| ||||| || ||||| Sbjct: 1692 gcagggtcgatcacaccagcctccatcaggttctcgtacttgtcagtcattgcattgtag 1633 Query: 409 cccatctcccactcgctatccttgatcttctcgatcacaacttc-cccttccactncagc 467 |||| |||||| ||||| |||||||||||||||| || ||||| |||||| ||| |||| Sbjct: 1632 cccacctcccaatcgctctccttgatcttctcgacaaccacttcacccttctactccagc 1573 Query: 468 gttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcagcaccaag 527 |||| || |||| || || |||||| ||||||||| ||||| || ||||| ||||| Sbjct: 1572 attgtgtgcaatcaatgaagcaggtgctaccaatgccttttgaataatatcagcgccaag 1513 Query: 528 gcgctcgtcgtggtcttcaattgtttctttgatcgcagggacataggtagataggtgcac 587 ||||| || |||| ||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 1512 acgctcatcagggtcctcaattgcttctttgatcttagggacaaccgtagataggtgcac 1453 Query: 588 atatgccgcaccaccaccgggaacaatgccctc 620 ||||||||||||||| || |||||||||||||| Sbjct: 1452 atatgccgcaccacctcctggaacaatgccctc 1420
>dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B08, full insert sequence Length = 1087 Score = 234 bits (118), Expect = 3e-58 Identities = 306/369 (82%) Strand = Plus / Minus Query: 252 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 311 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 802 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 743 Query: 312 cgaggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 |||||| || |||||||||||||||||||| ||||| || ||||| || ||||||| ||| Sbjct: 742 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 683 Query: 372 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 431 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 682 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 623 Query: 432 gatcttctcgatcacaacttccccttccactncagcgttgttggcgatcagcgatgccgg 491 ||||||||| | || ||||||||||||||| |||| |||| ||| ||||| || || || Sbjct: 622 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 563 Query: 492 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 551 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 562 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 503 Query: 552 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 611 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 502 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 443 Query: 612 aatgccctc 620 ||||||||| Sbjct: 442 aatgccctc 434
>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full insert sequence Length = 1543 Score = 226 bits (114), Expect = 7e-56 Identities = 305/369 (82%) Strand = Plus / Minus Query: 252 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 311 |||||| | ||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1312 agccttggacttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1253 Query: 312 cgaggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 |||||| || |||||||||||||||||||| ||||| || ||||| || ||||||| ||| Sbjct: 1252 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1193 Query: 372 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 431 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 1192 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1133 Query: 432 gatcttctcgatcacaacttccccttccactncagcgttgttggcgatcagcgatgccgg 491 ||||||||| | || ||||||||||||||| |||| |||| ||| ||||| || || || Sbjct: 1132 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 1073 Query: 492 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 551 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 1072 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 1013 Query: 552 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 611 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 1012 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 953 Query: 612 aatgccctc 620 ||||||||| Sbjct: 952 aatgccctc 944
>emb|AJ234407.1|HVU234407 Hordeum vulgare partial mRNA; clone cMWG0655 Length = 247 Score = 226 bits (114), Expect = 7e-56 Identities = 122/127 (96%) Strand = Plus / Plus Query: 494 cttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgttt 553 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 1 cttgcaatgccttctgaatgatgtcagcaccaagnvgctcgbcgtggtcttcaattgttt 60 Query: 554 ctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaa 613 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctttgatcgmaggaacataggtagataggtgcacatatgccgcaccaccaccgggaacaa 120 Query: 614 tgccctc 620 ||||||| Sbjct: 121 tgccctc 127
>gb|AY108518.1| Zea mays PCO123570 mRNA sequence Length = 1387 Score = 218 bits (110), Expect = 2e-53 Identities = 323/393 (82%), Gaps = 1/393 (0%) Strand = Plus / Minus Query: 229 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 288 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1071 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1012 Query: 289 gtggtgaggaccattccggacaccgaggcagcgttctggagcgcgcatctcgttaccttg 348 ||||| ||||||||||| | || ||||| || ||||||||||| || || || |||||| Sbjct: 1011 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 952 Query: 349 gcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcgcgttgtaa 408 || |||||||| ||||| | ||| |||||||||||||||||||| ||||| || ||||| Sbjct: 951 gcagggtcgatcacaccagcctccatcaggttctcgtacttgtcagtcattgcattgtag 892 Query: 409 cccatctcccactcgctat-ccttgatcttctcgatcacaacttccccttccactncagc 467 |||| |||||| ||||| | ||||||||||||||| || ||||| || || ||| |||| Sbjct: 891 cccacctcccaatcgctctgccttgatcttctcgacaaccacttcaccctctactccagc 832 Query: 468 gttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcagcaccaag 527 |||| || |||| || || |||||| ||||||||| ||||| || ||||| ||||| Sbjct: 831 attgtgtgcaatcaatgaagcaggtgctaccaatgccttttgaataatatcagcgccaag 772 Query: 528 gcgctcgtcgtggtcttcaattgtttctttgatcgcagggacataggtagataggtgcac 587 ||||| || |||| ||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 771 ccgctcatcagggtcctcaattgcttctttgatcttagggacaaccgtagataggtgcac 712 Query: 588 atatgccgcaccaccaccgggaacaatgccctc 620 ||||||||||||||| || |||||||||||||| Sbjct: 711 atatgccgcaccacctcctggaacaatgccctc 679
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 159 bits (80), Expect = 1e-35 Identities = 193/231 (83%) Strand = Plus / Minus Query: 252 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 311 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296639 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296580 Query: 312 cgaggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 |||||| || |||||||||||||||||||| ||||| || ||||| || ||||||| ||| Sbjct: 10296579 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 10296520 Query: 372 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 431 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 10296519 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 10296460 Query: 432 gatcttctcgatcacaacttccccttccactncagcgttgttggcgatcag 482 ||||||||| | || ||||||||||||||| |||| |||| ||| ||||| Sbjct: 10296459 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcag 10296409 Score = 91.7 bits (46), Expect = 3e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 503 ccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgatcg 562 |||| ||||| ||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 10296118 ccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgtttctttgatcg 10296059 Query: 563 cagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctc 620 ||||||| || || || |||||||| || | |||||| || |||||||||||||| Sbjct: 10296058 cagggacggtagttgaaagatgcacatacgctgtaccacctccaggaacaatgccctc 10296001
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 159 bits (80), Expect = 1e-35 Identities = 193/231 (83%) Strand = Plus / Minus Query: 252 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 311 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296521 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296462 Query: 312 cgaggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 |||||| || |||||||||||||||||||| ||||| || ||||| || ||||||| ||| Sbjct: 10296461 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 10296402 Query: 372 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 431 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 10296401 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 10296342 Query: 432 gatcttctcgatcacaacttccccttccactncagcgttgttggcgatcag 482 ||||||||| | || ||||||||||||||| |||| |||| ||| ||||| Sbjct: 10296341 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcag 10296291 Score = 91.7 bits (46), Expect = 3e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 503 ccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgatcg 562 |||| ||||| ||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 10296000 ccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgtttctttgatcg 10295941 Query: 563 cagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctc 620 ||||||| || || || |||||||| || | |||||| || |||||||||||||| Sbjct: 10295940 cagggacggtagttgaaagatgcacatacgctgtaccacctccaggaacaatgccctc 10295883
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 159 bits (80), Expect = 1e-35 Identities = 193/231 (83%) Strand = Plus / Minus Query: 252 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 311 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 59558 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 59499 Query: 312 cgaggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 |||||| || |||||||||||||||||||| ||||| || ||||| || ||||||| ||| Sbjct: 59498 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 59439 Query: 372 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 431 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 59438 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 59379 Query: 432 gatcttctcgatcacaacttccccttccactncagcgttgttggcgatcag 482 ||||||||| | || ||||||||||||||| |||| |||| ||| ||||| Sbjct: 59378 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcag 59328 Score = 91.7 bits (46), Expect = 3e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 503 ccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgatcg 562 |||| ||||| ||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 59037 ccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgtttctttgatcg 58978 Query: 563 cagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctc 620 ||||||| || || || |||||||| || | |||||| || |||||||||||||| Sbjct: 58977 cagggacggtagttgaaagatgcacatacgctgtaccacctccaggaacaatgccctc 58920
>gb|AY108560.1| Zea mays PCO140434 mRNA sequence Length = 2143 Score = 115 bits (58), Expect = 2e-22 Identities = 219/273 (80%) Strand = Plus / Minus Query: 261 cttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcagc 320 |||||||||||| || ||||| ||||| || || || |||||||| | ||| |||||||| Sbjct: 1849 cttgggcttctccacaacgattgcttgggtagtcagcaccattccagccacggaggcagc 1790 Query: 321 gttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactcgatcaggtt 380 |||||| || ||||| || || || ||||| |||||||| ||||| | ||| | |||||| Sbjct: 1789 gttctgcagggcgcacctagtcactttggcagggtcgatcacaccagcctccaccaggtt 1730 Query: 381 ctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctc 440 ||||| |||||| | ||| ||||||||||| | |||||||||||| ||| ||| || || Sbjct: 1729 ctcgtgcttgtccgccatggcgttgtaaccgaactcccactcgctttcccggattttatc 1670 Query: 441 gatcacaacttccccttccactncagcgttgttggcgatcagcgatgccggtgcttgcaa 500 | | || || |||||||| |||| || | ||| ||||||| ||| ||||| ||| Sbjct: 1669 cacaatcacctcaccttccaccccagcattatgggctatcagcgctgcaggtgccaccaa 1610 Query: 501 tgccttctgaatgatgtcagcaccaaggcgctc 533 |||||||||||||| |||||||| |||||||| Sbjct: 1609 agccttctgaatgatatcagcacctaggcgctc 1577
>ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1998 Score = 67.9 bits (34), Expect = 4e-08 Identities = 210/269 (78%) Strand = Plus / Minus Query: 265 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcagcgttc 324 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 1777 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 1718 Query: 325 tggagcgcgcatctcgttaccttggcggggtcgatgacacccgactcgatcaggttctcg 384 || | ||| ||||| || ||||| || ||||| || ||||| | || | || ||||||| Sbjct: 1717 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 1658 Query: 385 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 444 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 1657 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 1598 Query: 445 acaacttccccttccactncagcgttgttggcgatcagcgatgccggtgcttgcaatgcc 504 | ||||||||||| ||| |||| |||| || || || | ||||||||| | ||| Sbjct: 1597 atcacttccccttcaactccagcattgtgtgctattagtgctgccggtgccactagagcc 1538 Query: 505 ttctgaatgatgtcagcaccaaggcgctc 533 || |||||||| ||||||||||||||||| Sbjct: 1537 ttttgaatgatatcagcaccaaggcgctc 1509
>dbj|AK061901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H05, full insert sequence Length = 1107 Score = 67.9 bits (34), Expect = 4e-08 Identities = 210/269 (78%) Strand = Plus / Minus Query: 265 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcagcgttc 324 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 886 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 827 Query: 325 tggagcgcgcatctcgttaccttggcggggtcgatgacacccgactcgatcaggttctcg 384 || | ||| ||||| || ||||| || ||||| || ||||| | || | || ||||||| Sbjct: 826 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 767 Query: 385 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 444 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 766 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 707 Query: 445 acaacttccccttccactncagcgttgttggcgatcagcgatgccggtgcttgcaatgcc 504 | ||||||||||| ||| |||| |||| || || || | ||||||||| | ||| Sbjct: 706 atcacttccccttcaactccagcattgtgtgctattagtgctgccggtgccactagagcc 647 Query: 505 ttctgaatgatgtcagcaccaaggcgctc 533 || |||||||| ||||||||||||||||| Sbjct: 646 ttttgaatgatatcagcaccaaggcgctc 618
>gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence Length = 2098 Score = 65.9 bits (33), Expect = 1e-07 Identities = 209/268 (77%) Strand = Plus / Minus Query: 254 ccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccg 313 |||| ||||| ||||||||||| || || ||||| ||||| || |||||||| || || | Sbjct: 1795 ccttaggctttggcttctcgaccactatggcttgtgtggtcagcaccattcctgaaactg 1736 Query: 314 aggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactcga 373 | || | ||||| | || ||||| || |||||||| || |||||||| || | || | Sbjct: 1735 atgctgaattctgcaaggcacatcttgtcaccttggctggatcgatgactccagcttcca 1676 Query: 374 tcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttga 433 || |||||||| | ||||||||||||||| |||||||||||||| ||| ||||| | Sbjct: 1675 cgagattctcgtattggtctgtcatcgcgttataacccatctcccattcggcttccttca 1616 Query: 434 tcttctcgatcacaacttccccttccactncagcgttgttggcgatcagcgatgccggtg 493 |||||| | || ||||| ||||| ||| | || || | ||| |||| ||||| || | Sbjct: 1615 ccttctccacgactacttctccttcaactccggcattttgggctatcaaagatgctgggg 1556 Query: 494 cttgcaatgccttctgaatgatgtcagc 521 || ||||||||| |||||||||||||| Sbjct: 1555 ctaccaatgccttttgaatgatgtcagc 1528
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 4e-05 Identities = 163/208 (78%) Strand = Plus / Plus Query: 265 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcagcgttc 324 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 35977733 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 35977792 Query: 325 tggagcgcgcatctcgttaccttggcggggtcgatgacacccgactcgatcaggttctcg 384 || | ||| ||||| || ||||| || ||||| || ||||| | || | || ||||||| Sbjct: 35977793 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 35977852 Query: 385 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 444 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 35977853 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 35977912 Query: 445 acaacttccccttccactncagcgttgt 472 | ||||||||||| ||| |||| |||| Sbjct: 35977913 atcacttccccttcaactccagcattgt 35977940 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 503 ccttctgaatgatgtcagcaccaaggcgctc 533 |||| |||||||| ||||||||||||||||| Sbjct: 35978185 ccttttgaatgatatcagcaccaaggcgctc 35978215
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 58.0 bits (29), Expect = 4e-05 Identities = 163/208 (78%) Strand = Plus / Plus Query: 265 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcagcgttc 324 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 39244 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 39303 Query: 325 tggagcgcgcatctcgttaccttggcggggtcgatgacacccgactcgatcaggttctcg 384 || | ||| ||||| || ||||| || ||||| || ||||| | || | || ||||||| Sbjct: 39304 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 39363 Query: 385 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 444 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 39364 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 39423 Query: 445 acaacttccccttccactncagcgttgt 472 | ||||||||||| ||| |||| |||| Sbjct: 39424 atcacttccccttcaactccagcattgt 39451 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 503 ccttctgaatgatgtcagcaccaaggcgctc 533 |||| |||||||| ||||||||||||||||| Sbjct: 39696 ccttttgaatgatatcagcaccaaggcgctc 39726
>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1977 Score = 58.0 bits (29), Expect = 4e-05 Identities = 128/161 (79%) Strand = Plus / Minus Query: 259 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggca 318 ||||||||||| ||||||||||| || || ||||| | |||||| |||| || || ||| Sbjct: 1751 ggcttgggcttttcgacgacgatggcctgtgtggttaagaccatcccggctactgaagca 1692 Query: 319 gcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactcgatcagg 378 || ||||| | || || || ||||||||||| ||||| ||||| || ||||| | | Sbjct: 1691 gcattctgcaaagcacaccttgttaccttggcagggtcaatgactccagactccactaaa 1632 Query: 379 ttctcgtacttgtctgtcatcgcgttgtaacccatctccca 419 |||||||| |||||||||| || |||||||| | |||||| Sbjct: 1631 ttctcgtaagtgtctgtcatggcattgtaaccaacctccca 1591
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 4e-05 Identities = 163/208 (78%) Strand = Plus / Plus Query: 265 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcagcgttc 324 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 36067807 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 36067866 Query: 325 tggagcgcgcatctcgttaccttggcggggtcgatgacacccgactcgatcaggttctcg 384 || | ||| ||||| || ||||| || ||||| || ||||| | || | || ||||||| Sbjct: 36067867 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 36067926 Query: 385 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 444 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 36067927 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 36067986 Query: 445 acaacttccccttccactncagcgttgt 472 | ||||||||||| ||| |||| |||| Sbjct: 36067987 atcacttccccttcaactccagcattgt 36068014 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 503 ccttctgaatgatgtcagcaccaaggcgctc 533 |||| |||||||| ||||||||||||||||| Sbjct: 36068259 ccttttgaatgatatcagcaccaaggcgctc 36068289
>gb|AY389619.1| Hyacinthus orientalis chaperonin groEL mRNA, partial cds Length = 313 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 255 cttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccga 314 |||||||||||||||||| || || || ||||| || || ||||||||||| | |||||| Sbjct: 101 cttcggcttgggcttctccaccacaatggcttgtgttgttaggaccattccagccaccga 42 Query: 315 ggcagc 320 ||||| Sbjct: 41 agcagc 36
>ref|XM_814415.1| Trypanosoma cruzi strain CL Brener chaperonin HSP60, mitochondrial precursor (Tc00.1047053507641.290) partial mRNA Length = 1680 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 596 caccaccaccgggaacaatgccctc 620 ||||||||||||||||||||||||| Sbjct: 1279 caccaccaccgggaacaatgccctc 1255
>emb|X67473.1|TCHSP60 T.cruzi hsp60 gene Length = 2100 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 596 caccaccaccgggaacaatgccctc 620 ||||||||||||||||||||||||| Sbjct: 1686 caccaccaccgggaacaatgccctc 1662
>gb|L08791.1|TRBHSP60A Trypanosoma cruzi heat shock protein 60 mRNA, complete cds and flanking regions Length = 2020 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 596 caccaccaccgggaacaatgccctc 620 ||||||||||||||||||||||||| Sbjct: 1424 caccaccaccgggaacaatgccctc 1400
>gb|BT013144.1| Lycopersicon esculentum clone 134139R, mRNA sequence Length = 2052 Score = 44.1 bits (22), Expect = 0.54 Identities = 61/74 (82%) Strand = Plus / Minus Query: 385 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 444 |||||||| ||||| || ||||||||||||| ||| | ||| |||| |||||||| | Sbjct: 1676 tacttgtcggtcattgcattgtaacccatcttccatttgctgccctttatcttctccact 1617 Query: 445 acaacttccccttc 458 || ||||||||||| Sbjct: 1616 actacttccccttc 1603
>emb|X95992.1|EGHSP60GN E.gracilis mRNA for heat shock protein 60 Length = 1946 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 595 gcaccaccaccgggaacaatgccctc 620 ||||||||||||||||| |||||||| Sbjct: 1297 gcaccaccaccgggaacgatgccctc 1272
>gb|AC006143.1|AC006143 Homo sapiens PAC clone RP1-74M20 from X, complete sequence Length = 191544 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 gaagatttctctgattcacaag 48 |||||||||||||||||||||| Sbjct: 66443 gaagatttctctgattcacaag 66464
>gb|BT013632.1| Lycopersicon esculentum clone 132434F, mRNA sequence Length = 2127 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 596 caccaccaccgggaacaatgccctc 620 |||||||||| |||||||||||||| Sbjct: 1435 caccaccacctggaacaatgccctc 1411
>gb|AC126940.4| Mus musculus BAC clone RP23-77E4 from chromosome 19, complete sequence Length = 256476 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 acctttttcactttcagttga 130 ||||||||||||||||||||| Sbjct: 8587 acctttttcactttcagttga 8607
>gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, complete sequence Length = 191540 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 acctttttcactttcagttga 130 ||||||||||||||||||||| Sbjct: 184076 acctttttcactttcagttga 184096
>ref|XM_814413.1| Trypanosoma cruzi strain CL Brener chaperonin HSP60, mitochondrial precursor (Tc00.1047053507641.280) partial mRNA Length = 1683 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 596 caccaccaccgggaacaatgccctc 620 ||||||||||||||||||| ||||| Sbjct: 1273 caccaccaccgggaacaataccctc 1249
>ref|XM_814417.1| Trypanosoma cruzi strain CL Brener chaperonin HSP60, mitochondrial precursor (Tc00.1047053507641.300) partial mRNA Length = 787 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 596 caccaccaccgggaacaatgccctc 620 ||||||||||||||||||| ||||| Sbjct: 377 caccaccaccgggaacaataccctc 353
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 313 gaggcagcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacc 365 |||||||||||||| |||||| | | || ||||||| |||||||||||||| Sbjct: 258445 gaggcagcgttctgcagcgcggagcgggtgaccttggtcgggtcgatgacacc 258393
>dbj|AB236859.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C766 Length = 1971 Score = 42.1 bits (21), Expect = 2.1 Identities = 90/113 (79%) Strand = Plus / Minus Query: 259 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggca 318 ||||| ||||| ||||| || || || || ||||| | ||||||||||| ||| || ||| Sbjct: 1750 ggcttaggcttttcgaccacaatggcctgtgtggtcaagaccattccggccactgatgca 1691 Query: 319 gcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 || ||||| | ||||| | ||||||||||| ||||| ||||| || ||||| Sbjct: 1690 gcattctgcaaagcgcaacgtgttaccttggcagggtcaatgactccagactc 1638
>dbj|AB236844.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C447 Length = 1999 Score = 42.1 bits (21), Expect = 2.1 Identities = 90/113 (79%) Strand = Plus / Minus Query: 259 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggca 318 ||||| ||||| ||||| || || || || ||||| | ||||||||||| ||| || ||| Sbjct: 1768 ggcttaggcttttcgaccacaatggcctgtgtggtcaagaccattccggccactgatgca 1709 Query: 319 gcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 || ||||| | ||||| | ||||||||||| ||||| ||||| || ||||| Sbjct: 1708 gcattctgcaaagcgcaacgtgttaccttggcagggtcaatgactccggactc 1656
>dbj|AB236783.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1772 Length = 2038 Score = 42.1 bits (21), Expect = 2.1 Identities = 90/113 (79%) Strand = Plus / Minus Query: 259 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggca 318 ||||| ||||| ||||| || || || || ||||| | ||||||||||| ||| || ||| Sbjct: 1760 ggcttaggcttttcgaccacaatggcctgtgtggtcaagaccattccggccactgatgca 1701 Query: 319 gcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 || ||||| | ||||| | ||||||||||| ||||| ||||| || ||||| Sbjct: 1700 gcattctgcaaagcgcaacgtgttaccttggcagggtcaatgactccggactc 1648
>dbj|AB236779.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1724 Length = 1982 Score = 42.1 bits (21), Expect = 2.1 Identities = 90/113 (79%) Strand = Plus / Minus Query: 259 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggca 318 ||||| ||||| ||||| || || || || ||||| | ||||||||||| ||| || ||| Sbjct: 1752 ggcttaggcttttcgaccacaatggcctgtgtggtcaagaccattccggccactgatgca 1693 Query: 319 gcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 || ||||| | ||||| | ||||||||||| ||||| ||||| || ||||| Sbjct: 1692 gcattctgcaaagcgcaacgtgttaccttggcagggtcaatgactccggactc 1640
>dbj|AB236775.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: C1598 Length = 2018 Score = 42.1 bits (21), Expect = 2.1 Identities = 90/113 (79%) Strand = Plus / Minus Query: 259 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggca 318 ||||| ||||| ||||| || || || || ||||| | ||||||||||| ||| || ||| Sbjct: 1696 ggcttaggcttttcgaccacaatggcctgtgtggtcaagaccattccggccactgatgca 1637 Query: 319 gcgttctggagcgcgcatctcgttaccttggcggggtcgatgacacccgactc 371 || ||||| | ||||| | ||||||||||| ||||| ||||| || ||||| Sbjct: 1636 gcattctgcaaagcgcaacgtgttaccttggcagggtcaatgactccggactc 1584
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 tatccttgatcttctcgatca 445 ||||||||||||||||||||| Sbjct: 69531 tatccttgatcttctcgatca 69511
>dbj|AK047518.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930082I23 product:unclassifiable, full insert sequence Length = 3307 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 538 tggtcttcaattgtttctttg 558 ||||||||||||||||||||| Sbjct: 2488 tggtcttcaattgtttctttg 2508
>emb|AL359239.4|CNS05TEQ Human chromosome 14 DNA sequence BAC R-432I6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 169985 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggtatttttatttaaaaatga 22 ||||||||||||||||||||| Sbjct: 120620 ggtatttttatttaaaaatga 120640
>gb|AC115740.8| Mus musculus chromosome 3, clone RP23-476G18, complete sequence Length = 226125 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 538 tggtcttcaattgtttctttg 558 ||||||||||||||||||||| Sbjct: 150239 tggtcttcaattgtttctttg 150259
>gb|AC137713.8| Mus musculus chromosome 15, clone RP24-468P6, complete sequence Length = 155341 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 agggacataggtagataggt 583 |||||||||||||||||||| Sbjct: 126402 agggacataggtagataggt 126383
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 343 accttggcggggtcgatgacacccgact 370 ||||| || ||||||||||||||||||| Sbjct: 423826 accttcgccgggtcgatgacacccgact 423853
>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence Length = 188132 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cctgaactgaagcatctaaa 175 |||||||||||||||||||| Sbjct: 123998 cctgaactgaagcatctaaa 124017
>emb|AL355480.22| Human DNA sequence from clone RP4-697E16 on chromosome 1 Contains the 5' end of the PRDX1 gene for peroxiredoxin 1, a high-mobility group box 1 (HMGB1) pseudogene, the AKR1A1 gene for aldo-keto reductase family 1 member A1 (aldehyde reductase), the NASP gene for nuclear autoantigenic sperm protein (histone-binding) and a novel gene (FLJ33084), complete sequence Length = 106171 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ggtatttttatttaaaaatg 21 |||||||||||||||||||| Sbjct: 83188 ggtatttttatttaaaaatg 83207
>emb|AL354807.6| Human DNA sequence from clone RP11-522F22 on chromosome 13 Contains a DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1) pseudogene, complete sequence Length = 157135 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tatttttatttaaaaatgac 23 |||||||||||||||||||| Sbjct: 33401 tatttttatttaaaaatgac 33382
>emb|AL158830.17| Human DNA sequence from clone RP11-421H8 on chromosome 9 Contains the 3' end of the RECK gene for reversion-inducing-cysteine-rich protein with kazal motifs (ST15, hRECK), the C9orf19 gene for ,chromosome 9 open reading frame 19 (GAPR-1, GLIPR2), the CCIN gene for calicin, the CLTA gene for clathrin, light polypeptide (LCA), the gene for UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase (NM, DMRV, IBM2, GLCNE)(GNE) and five CpG islands, complete sequence Length = 191436 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gtatttttatttaaaaatga 22 |||||||||||||||||||| Sbjct: 91820 gtatttttatttaaaaatga 91801
>emb|Z27222.1|BNPLCAS B.napus mRNA for plastid chaperonin-60 alpha subunit Length = 1975 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 310 accgaggcagcgttctggagcgcgcatctcgt 341 ||||| ||||||||||| ||||| |||||||| Sbjct: 1711 accgaagcagcgttctgcagcgcacatctcgt 1680
>emb|X95971.1|SLGROEL2G S.lividans groEL2 gene Length = 2192 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 319 gcgttctggagcgcgcatctcgttaccttggcggggtcga 358 ||||||||||||||| | | ||| |||||||| ||||||| Sbjct: 1989 gcgttctggagcgcggaacgcgtcaccttggccgggtcga 1950
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 ccaccaccgggaacaatgcc 617 |||||||||||||||||||| Sbjct: 29709 ccaccaccgggaacaatgcc 29690
>emb|BX279525.12| Zebrafish DNA sequence from clone CH211-244C18 in linkage group 12, complete sequence Length = 173914 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 tatttttatttaaaaatgacgctg 27 ||||||||||||||||||| |||| Sbjct: 5716 tatttttatttaaaaatgaagctg 5739
>gb|AC105337.7| Homo sapiens chromosome 17, clone CTD-2116F7, complete sequence Length = 126083 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 cttgcaatgccttctgaatg 513 |||||||||||||||||||| Sbjct: 9004 cttgcaatgccttctgaatg 9023
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cggcttgggcttctcgacga 277 |||||||||||||||||||| Sbjct: 2275572 cggcttgggcttctcgacga 2275553
>emb|BX296542.12| Zebrafish DNA sequence from clone CH211-278C10 in linkage group 9, complete sequence Length = 174884 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gtatttttatttaaaaatga 22 |||||||||||||||||||| Sbjct: 142272 gtatttttatttaaaaatga 142253
>emb|BX649437.8| Zebrafish DNA sequence from clone DKEY-28J9 in linkage group 16, complete sequence Length = 158346 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gtatttttatttaaaaatga 22 |||||||||||||||||||| Sbjct: 115736 gtatttttatttaaaaatga 115755
>gb|AY688374.2| Lates calcarifer parvalbumin beta-1 gene, complete cds Length = 2749 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 ttctgaatgatgtcagcacc 524 |||||||||||||||||||| Sbjct: 1748 ttctgaatgatgtcagcacc 1767
>gb|AC138405.6| Mus musculus chromosome 1, clone RP24-280N11, complete sequence Length = 151783 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ttagccttcggcttgggctt 269 |||||||||||||||||||| Sbjct: 147389 ttagccttcggcttgggctt 147408
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 accttggcggggtcgatgacaccc 366 |||||| ||||||||||||||||| Sbjct: 639066 accttgacggggtcgatgacaccc 639043
>emb|AJ338304.1|HSA338304 Homo sapiens genomic sequence surrounding NotI site, clone NR1-PA22RS Length = 717 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 537 gtggtcttcaattgtttctt 556 |||||||||||||||||||| Sbjct: 522 gtggtcttcaattgtttctt 541
>gb|AC147627.6| Mus musculus BAC clone RP24-382F19 from Y, complete sequence Length = 226237 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gaactgaagcatctaaaaaa 178 |||||||||||||||||||| Sbjct: 206536 gaactgaagcatctaaaaaa 206517
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cggcttgggcttctcgacga 277 |||||||||||||||||||| Sbjct: 2297918 cggcttgggcttctcgacga 2297899
>gb|AC173476.2| Mus musculus BAC clone RP24-335D7 from chromosome 12, complete sequence Length = 182245 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gaactgaagcatctaaaaaa 178 |||||||||||||||||||| Sbjct: 115349 gaactgaagcatctaaaaaa 115330
>dbj|AP007289.1| Lotus japonicus genomic DNA, clone:LjT33M01, TM0300b, complete sequence Length = 103374 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 atttttatttaaaaatgacg 24 |||||||||||||||||||| Sbjct: 94627 atttttatttaaaaatgacg 94608
>dbj|AP004546.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43N05, TM0178, complete sequence Length = 97268 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 atttttatttaaaaatgacg 24 |||||||||||||||||||| Sbjct: 16619 atttttatttaaaaatgacg 16638
>gb|M35599.1|BNA60CPNA B.napus plastid 60-kDa chaperonin-60 alpha-polypeptide (cpn-60 alpha) mRNA, 3' end Length = 1789 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 310 accgaggcagcgttctggagcgcgcatctcgt 341 ||||| ||||||||||| ||||| |||||||| Sbjct: 1549 accgaagcagcgttctgaagcgcacatctcgt 1518
>gb|M76658.1|STMGROELY Streptomyces albus open reading frame (GROEL2) gene, complete cds Length = 1814 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 319 gcgttctggagcgcgcatctcgttaccttggcggggtcga 358 ||||||||||||||| | | ||| |||||||| ||||||| Sbjct: 1611 gcgttctggagcgcggaacgcgtcaccttggccgggtcga 1572
>emb|AL591762.13| Mouse DNA sequence from clone RP23-465I6 on chromosome 2, complete sequence Length = 137773 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 cttgcaatgccttctgaatg 513 |||||||||||||||||||| Sbjct: 109544 cttgcaatgccttctgaatg 109563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,526,916 Number of Sequences: 3902068 Number of extensions: 5526916 Number of successful extensions: 123962 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123472 Number of HSP's gapped (non-prelim): 472 length of query: 620 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 597 effective length of database: 17,143,297,704 effective search space: 10234548729288 effective search space used: 10234548729288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)