Clone Name | rbah63p21 |
---|---|
Clone Library Name | barley_pub |
>emb|BX548071.7| Zebrafish DNA sequence from clone DKEY-25L23 in linkage group 9, complete sequence Length = 223099 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacattaca 93 ||||||||||||||||||||||| Sbjct: 157538 attaattaattaattacattaca 157516
>emb|BX927401.14| Zebrafish DNA sequence from clone CH211-210H11 in linkage group 19, complete sequence Length = 137958 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacattaca 93 ||||||||||||||||||||||| Sbjct: 98980 attaattaattaattacattaca 99002
>gb|AC158686.2| Mus musculus 10 BAC RP24-74G10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 217129 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacattaca 93 ||||||||||||||||||||||| Sbjct: 182645 attaattaattaattacattaca 182667
>emb|CT025603.11| Mouse DNA sequence from clone RP24-246F8 on chromosome 13, complete sequence Length = 153535 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 acattaattaattaattacatta 91 ||||||||||||||||||||||| Sbjct: 4009 acattaattaattaattacatta 4031
>emb|AL590149.9| Zebrafish DNA sequence from clone RP71-36D5 in linkage group 17 Contains the 3' part of a novel gene similar to KIAA0953, a novel gene similar to POMC (propiomelanocortin), a novel gene similar to FCN2 (ficolin 2), a novel gene similar to SNX9 (sorting nexin 9) and a CpG island, complete sequence Length = 167272 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 73 taattaattaattacattacaa 94 |||||||||||||||||||||| Sbjct: 46538 taattaattaattacattacaa 46559
>gb|AC080078.7| Homo sapiens BAC clone RP11-461L13 from 4, complete sequence Length = 150567 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 139 aggatatatgtcctaccagttccaaa 164 ||||||||||||||||||||| |||| Sbjct: 142708 aggatatatgtcctaccagtttcaaa 142683
>emb|AL929299.10| Zebrafish DNA sequence from clone BUSM1-SL6, complete sequence Length = 72631 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 73 taattaattaattacattacaa 94 |||||||||||||||||||||| Sbjct: 27104 taattaattaattacattacaa 27083
>gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosome unknown, complete sequence Length = 238934 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 206 ccacagcattagctctggaaac 227 |||||||||||||||||||||| Sbjct: 92175 ccacagcattagctctggaaac 92154
>gb|AC170813.3| Rhesus Macaque BAC CH250-421G6 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 165221 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacattac 92 |||||||||||||||||||||| Sbjct: 126490 attaattaattaattacattac 126511
>gb|AC099025.2| Drosophila melanogaster clone BACR04O19, complete sequence Length = 160827 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 taattaattaattacattaca 93 ||||||||||||||||||||| Sbjct: 96809 taattaattaattacattaca 96829
>gb|AC134336.2| Mus musculus BAC clone RP23-134A10 from chromosome 6, complete sequence Length = 204120 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 114809 attaattaattaattacatta 114789
>gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome 7, complete sequence Length = 175603 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 156239 attaattaattaattacatta 156259
>gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome 7, complete sequence Length = 230675 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 69835 attaattaattaattacatta 69855
>gb|AC124681.3| Mus musculus BAC clone RP24-261H7 from chromosome 16, complete sequence Length = 173837 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 acattaattaattaattacat 89 ||||||||||||||||||||| Sbjct: 122912 acattaattaattaattacat 122892
>gb|AC125137.3| Mus musculus BAC clone RP24-324K9 from chromosome 6, complete sequence Length = 170336 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ccgccacagcattagctctgg 223 ||||||||||||||||||||| Sbjct: 136261 ccgccacagcattagctctgg 136241
>gb|AC149305.19| Medicago truncatula clone mth2-78k4, complete sequence Length = 118017 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 26441 attaattaattaattacatta 26461
>emb|AL360268.14| Human DNA sequence from clone RP11-379C10 on chromosome 9 Contains the gene for a novel protein, the 5' end of the PCSCL gene for likely ortholog of rat peroxisomal Ca-dependent solute carrier-like protein (KIAA1896), two novel genes and a CpG island, complete sequence Length = 110130 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 8866 attaattaattaattacatta 8886
>emb|CR354424.7| Zebrafish DNA sequence from clone CH211-125L9 in linkage group 24, complete sequence Length = 156999 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 acattaattaattaattacat 89 ||||||||||||||||||||| Sbjct: 62744 acattaattaattaattacat 62724
>gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, complete sequence Length = 150889 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 62 tttgacgacattaattaattaatta 86 ||||| ||||||||||||||||||| Sbjct: 11407 tttgaagacattaattaattaatta 11431
>emb|BX571803.23| Zebrafish DNA sequence from clone DKEY-273G3 in linkage group 9, complete sequence Length = 241708 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 60023 attaattaattaattacatta 60003
>gb|AC109928.4| Homo sapiens BAC clone RP11-755F21 from 4, complete sequence Length = 112353 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 cattaattaattaattacatt 90 ||||||||||||||||||||| Sbjct: 43457 cattaattaattaattacatt 43477
>gb|AC093694.4| Homo sapiens BAC clone RP11-769N3 from 4, complete sequence Length = 158566 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 cattaattaattaattacatt 90 ||||||||||||||||||||| Sbjct: 115460 cattaattaattaattacatt 115480
>dbj|AK085252.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630001B22 product:myeloid/lymphoid or mixed lineage-leukemia translocation to 10 homolog (Drosophila), full insert sequence Length = 3463 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 323 attaattaattaattacatta 303
>gb|AC155839.4| Mus musculus 6 BAC RP24-96J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173368 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ccgccacagcattagctctgg 223 ||||||||||||||||||||| Sbjct: 24863 ccgccacagcattagctctgg 24843
>gb|AC011748.7| Homo sapiens BAC clone RP11-441M4 from 2, complete sequence Length = 127037 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 tcaaaacttgaagcaaccaat 251 ||||||||||||||||||||| Sbjct: 76198 tcaaaacttgaagcaaccaat 76218
>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete sequences Length = 155513 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 taattaattaattacattaca 93 ||||||||||||||||||||| Sbjct: 108516 taattaattaattacattaca 108536
>emb|BX088644.9| Zebrafish DNA sequence from clone CH211-157L15 in linkage group 20, complete sequence Length = 175570 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 gcagtttgacgacattaattaattaatta 86 |||||| || ||||||||||||||||||| Sbjct: 44517 gcagttagatgacattaattaattaatta 44545
>gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42 of 73 of the complete sequence Length = 260367 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 taattaattaattacattaca 93 ||||||||||||||||||||| Sbjct: 123064 taattaattaattacattaca 123084
>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105 Length = 340000 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 taattaattaattacattaca 93 ||||||||||||||||||||| Sbjct: 56820 taattaattaattacattaca 56840
>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete sequence Length = 136804 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 taattaattaattacattaca 93 ||||||||||||||||||||| Sbjct: 78937 taattaattaattacattaca 78957
>gb|AC004248.1|AC004248 Drosophila melanogaster (P1 DS03910 (D165)) DNA sequence, complete sequence Length = 77409 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 taattaattaattacattaca 93 ||||||||||||||||||||| Sbjct: 65701 taattaattaattacattaca 65681
>gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complete sequence Length = 176698 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 167585 attaattaattaattacatta 167565
>dbj|AP006366.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT35C03, TM0176a, complete sequence Length = 119525 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 14924 attaattaattaattacatta 14904
>emb|AL928557.6| Mouse DNA sequence from clone RP23-349H7 on chromosome 2, complete sequence Length = 159128 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 19859 attaattaattaattacatta 19839
>emb|AL669925.8| Mouse DNA sequence from clone RP23-174D24 on chromosome 11, complete sequence Length = 69520 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatta 91 ||||||||||||||||||||| Sbjct: 24241 attaattaattaattacatta 24221
>gb|AC109145.11| Mus musculus chromosome 1, clone RP23-109O14, complete sequence Length = 186661 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cattaattaattaattacat 89 |||||||||||||||||||| Sbjct: 34868 cattaattaattaattacat 34849
>gb|AC151752.1| Ornithorhynchus anatinus chromosome UNK clone OABb-503A1, complete sequence Length = 132108 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 acattaattaattaattaca 88 |||||||||||||||||||| Sbjct: 107514 acattaattaattaattaca 107495
>ref|XM_507671.1| PREDICTED: Pan troglodytes integrin, alpha 8 (LOC450323), mRNA Length = 1675 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 242 agcaaccaattcttgatgagaatgcccg 269 ||||||||||||||| ||||||| |||| Sbjct: 852 agcaaccaattcttgctgagaatccccg 825
>ref|XM_471072.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 687 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 cgccagcagcccaccaccat 375 |||||||||||||||||||| Sbjct: 91 cgccagcagcccaccaccat 72
>gb|AC147514.12| Mus musculus chromosome 1, clone RP23-442A6, complete sequence Length = 187725 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cattaattaattaattacat 89 |||||||||||||||||||| Sbjct: 104414 cattaattaattaattacat 104433
>gb|AY617946.1| Sterkiella histriomuscorum clone UGC1O0006_I11_R genomic sequence Length = 812 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 taattaattaattacattac 92 |||||||||||||||||||| Sbjct: 100 taattaattaattacattac 119
>gb|AC119894.5| Mus musculus chromosome 10, clone RP24-225G11, complete sequence Length = 227319 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 112550 attaattaattaattacatt 112531
>ref|XM_544731.2| PREDICTED: Canis familiaris similar to CG4785-PA, transcript variant 2 (LOC487606), mRNA Length = 2267 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 aaacagatcaaaacttgaagcaac 247 ||||||| |||||||||||||||| Sbjct: 2238 aaacagaacaaaacttgaagcaac 2215
>ref|XM_861053.1| PREDICTED: Canis familiaris similar to CG4785-PA, transcript variant 6 (LOC487606), mRNA Length = 2118 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 aaacagatcaaaacttgaagcaac 247 ||||||| |||||||||||||||| Sbjct: 2089 aaacagaacaaaacttgaagcaac 2066
>ref|XM_861038.1| PREDICTED: Canis familiaris similar to CG4785-PA, transcript variant 5 (LOC487606), mRNA Length = 2294 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 aaacagatcaaaacttgaagcaac 247 ||||||| |||||||||||||||| Sbjct: 2265 aaacagaacaaaacttgaagcaac 2242
>ref|XM_847562.1| PREDICTED: Canis familiaris similar to CG4785-PA, transcript variant 3 (LOC487606), mRNA Length = 2288 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 aaacagatcaaaacttgaagcaac 247 ||||||| |||||||||||||||| Sbjct: 2259 aaacagaacaaaacttgaagcaac 2236
>emb|BX511008.19| Zebrafish DNA sequence from clone DKEY-109I21 in linkage group 10, complete sequence Length = 83904 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 47030 attaattaattaattacatt 47011
>emb|CR450841.7| Zebrafish DNA sequence from clone DKEY-16N9 in linkage group 11, complete sequence Length = 263287 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 acattaattaattaattaca 88 |||||||||||||||||||| Sbjct: 243402 acattaattaattaattaca 243421
>emb|CR933378.1| Paramecium tetraurelia, Small GTPase rab, putative, complete gene Length = 3001 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 attacacaaattgtaataaa 45 |||||||||||||||||||| Sbjct: 2187 attacacaaattgtaataaa 2206
>emb|CR937029.1| M.truncatula DNA sequence from clone MTH2-105B15 on chromosome 3, complete sequence Length = 112155 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tttgacgacattaattaatt 81 |||||||||||||||||||| Sbjct: 4318 tttgacgacattaattaatt 4299
>emb|CR931792.9| Zebrafish DNA sequence from clone DKEY-180L1 in linkage group 13, complete sequence Length = 163673 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cattaattaattaattacat 89 |||||||||||||||||||| Sbjct: 24176 cattaattaattaattacat 24157
>gb|AC103363.6| Mus musculus chromosome 17, clone RP24-247H9, complete sequence Length = 222909 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 attaattaattaattacattacaa 94 ||||||||||||||||||| |||| Sbjct: 115933 attaattaattaattacatcacaa 115910
>gb|AC009192.72| Mus musculus strain 129/Sv clone ct7-555d9 map 6, complete sequence Length = 120530 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ctggaaacagatcaaaacttgaag 243 ||||||||| |||||||||||||| Sbjct: 120138 ctggaaacaaatcaaaacttgaag 120161
>gb|AC006447.24| Mus musculus strain 129/Sv clone ct7-67d14 map 6, complete sequence Length = 140454 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ctggaaacagatcaaaacttgaag 243 ||||||||| |||||||||||||| Sbjct: 23994 ctggaaacaaatcaaaacttgaag 24017
>emb|AL391500.13| Human DNA sequence from clone RP11-707M13 on chromosome 6 Contains a novel pseudogene and an ADH5 (alcohol dehydrogenase 5 (class III) chi polypeptide) pseudogene, complete sequence Length = 171220 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 aattaattaattacattaca 93 |||||||||||||||||||| Sbjct: 106925 aattaattaattacattaca 106906
>emb|AL365510.32| Human DNA sequence from clone RP11-429H9 on chromosome 10 Contains the 3' end of a variant of a novel gene (FLJ33990), a phosphatidylinositol-4-phosphate 5-kinase, type I alpha (PIP5K1A) pseudogene, the proteasome (prosome macropain) 26S subunit non-ATPase 4 pseudogene 2 (PSMD4P2), the 5' end of the PLCE1 gene for phospholipase C, epsilon 1 (PLCE, KIAA1516), the 3' end of a novel transcript and two CpG islands, complete sequence Length = 180189 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ttaattaattaattacatta 91 |||||||||||||||||||| Sbjct: 66858 ttaattaattaattacatta 66839
>emb|AL139039.17| Human DNA sequence from clone RP11-360O19 on chromosome 6 Contains a novel gene, a glucosaminyl (N-acetyl) transferase 1 core 2 (beta-1,6-N-acetylglucosaminyltransferase) (GCNT1) pseudogene, the gene for a novel protein similar to GCNT1, the 5' end of the GCNT2 gene for glucosaminyl (N-acetyl) transferase 2 I-branching enzyme and a ribosomal protein L21 (RPL21) pseudogene, complete sequence Length = 87636 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 37942 attaattaattaattacatt 37961
>emb|AL137019.6| Human DNA sequence from clone RP11-143P10 on chromosome 9q31.3-33.1, complete sequence Length = 181542 Score = 40.1 bits (20), Expect = 5.1 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 23 cagattacaca-aattgtaataaacaca 49 ||||||||||| |||||||||||||||| Sbjct: 139185 cagattacacagaattgtaataaacaca 139158
>emb|BX546489.13| Zebrafish DNA sequence from clone CH211-258F14 in linkage group 3, complete sequence Length = 148304 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 141239 attaattaattaattacatt 141258
>emb|CR339064.10| Zebrafish DNA sequence from clone CH211-152J3 in linkage group 23, complete sequence Length = 98209 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 19654 attaattaattaattacatt 19673
>emb|BX649391.13| Zebrafish DNA sequence from clone DKEY-1K23 in linkage group 5, complete sequence Length = 133337 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 85905 attaattaattaattacatt 85924
>emb|BX640473.9| Zebrafish DNA sequence from clone CH211-201F12 in linkage group 5, complete sequence Length = 193735 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 7949 attaattaattaattacatt 7968
>gb|AC154127.2| Ornithorhynchus anatinus BAC clone OABb-20A1 from chromosome unknown, complete sequence Length = 188107 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 acattaattaattaattaca 88 |||||||||||||||||||| Sbjct: 42625 acattaattaattaattaca 42644
>gb|AC090402.8| Homo sapiens chromosome 18, clone RP11-739D7, complete sequence Length = 150690 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cattaattaattaattacat 89 |||||||||||||||||||| Sbjct: 84365 cattaattaattaattacat 84384
>emb|BX005126.10| Zebrafish DNA sequence from clone CH211-129O9 in linkage group 5, complete sequence Length = 160487 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 156146 attaattaattaattacatt 156127
>gb|AC104821.4| Homo sapiens BAC clone RP11-745L13 from 4, complete sequence Length = 93879 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 83716 attaattaattaattacatt 83735
>gb|AC015988.10| Homo sapiens, clone RP11-153F20, complete sequence Length = 150113 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cattaattaattaattacat 89 |||||||||||||||||||| Sbjct: 122346 cattaattaattaattacat 122365
>emb|BX842571.5| Zebrafish DNA sequence from clone DKEY-16G11 in linkage group 5, complete sequence Length = 145925 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 72105 attaattaattaattacatt 72124
>emb|CR378661.1| M.truncatula DNA sequence from clone XX-10B15, complete sequence Length = 112155 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tttgacgacattaattaatt 81 |||||||||||||||||||| Sbjct: 4318 tttgacgacattaattaatt 4299
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 cgccagcagcccaccaccat 375 |||||||||||||||||||| Sbjct: 1188375 cgccagcagcccaccaccat 1188356
>dbj|AB187572.1| Geothelphusa dehaani mitochondrial DNA, repeat sequence: RU2 Length = 1007 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 aattaattaattacattacaataa 97 |||||||||||||||||| ||||| Sbjct: 788 aattaattaattacattataataa 811
>dbj|AB187571.1| Geothelphusa dehaani mitochondrial DNA, repeat sequence: RU1 Length = 999 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 aattaattaattacattacaataa 97 |||||||||||||||||| ||||| Sbjct: 781 aattaattaattacattataataa 804
>dbj|AB187570.1| Geothelphusa dehaani mitochondrial DNA, nearly complete genome Length = 18197 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 aattaattaattacattacaataa 97 |||||||||||||||||| ||||| Sbjct: 364 aattaattaattacattataataa 387
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 attaattaattaattacattacaa 94 ||||||||||||||||||| |||| Sbjct: 7131412 attaattaattaattacatcacaa 7131435
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 769537 attaattaattaattacatt 769556
>gb|AC097479.3| Homo sapiens BAC clone RP11-115G5 from 4, complete sequence Length = 137848 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 34113 attaattaattaattacatt 34094
>gb|AC107896.7| Homo sapiens chromosome 18, clone RP11-718I15, complete sequence Length = 185750 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cattaattaattaattacat 89 |||||||||||||||||||| Sbjct: 101414 cattaattaattaattacat 101395
>gb|AC154838.2| Mus musculus BAC clone RP23-64F2 from chromosome 14, complete sequence Length = 224431 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 21114 attaattaattaattacatt 21133
>gb|AC117498.6| Homo sapiens 12 BAC RP11-579D7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 144383 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 85184 attaattaattaattacatt 85165
>gb|AC068769.19| Homo sapiens 3 BAC RP11-14I2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191246 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 acagggcctgtgtggttgcc 340 |||||||||||||||||||| Sbjct: 177881 acagggcctgtgtggttgcc 177900
>gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, complete sequence Length = 163418 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 73154 attaattaattaattacatt 73173
>gb|AC084273.20| Mus musculus strain C57BL/6J chromosome 6 clone rp23-313e8, complete sequence Length = 182818 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 ctggaaacagatcaaaacttgaag 243 ||||||||| |||||||||||||| Sbjct: 81760 ctggaaacaaatcaaaacttgaag 81783
>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_G09 Length = 115815 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 108068 attaattaattaattacatt 108087
>emb|AL935305.13| Zebrafish DNA sequence from clone CH211-226I4 in linkage group 23, complete sequence Length = 190222 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 89203 attaattaattaattacatt 89184
>emb|AL929152.24| Zebrafish DNA sequence from clone CH211-59L24, complete sequence Length = 172954 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aattaattaattacattaca 93 |||||||||||||||||||| Sbjct: 72418 aattaattaattacattaca 72437
>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1513_F02 Length = 126845 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 89344 attaattaattaattacatt 89363
>emb|BX511013.9| Zebrafish DNA sequence from clone DKEY-221I2 in linkage group 20, complete sequence Length = 161346 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 15130 attaattaattaattacatt 15111
>gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, complete sequence Length = 208338 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 aattacattacaataacaga 101 |||||||||||||||||||| Sbjct: 166005 aattacattacaataacaga 166024
>emb|BX666064.10| Zebrafish DNA sequence from clone DKEY-6N3 in linkage group 22, complete sequence Length = 156234 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 18681 attaattaattaattacatt 18700 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 attaattaattaattacattacaa 94 |||||||||||||||| ||||||| Sbjct: 18694 attaattaattaattaaattacaa 18671
>gb|AF126342.1|AF126342 Spiniphora punctipennis 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 464 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ttaattaattaattacatta 91 |||||||||||||||||||| Sbjct: 292 ttaattaattaattacatta 311
>gb|AC090227.10| Homo sapiens chromosome 18, clone RP11-813F20, complete sequence Length = 224366 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gacattaattaattaattac 87 |||||||||||||||||||| Sbjct: 151698 gacattaattaattaattac 151717
>gb|DQ212699.1| Paramecium tetraurelia 3C420 gene, complete cds; macronuclear Length = 812 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cattaattaattaattacat 89 |||||||||||||||||||| Sbjct: 724 cattaattaattaattacat 743
>emb|CR854989.8| Zebrafish DNA sequence from clone DKEY-220M7 in linkage group 16, complete sequence Length = 101111 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 62949 attaattaattaattacatt 62968
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 attaattaattaattacattacaa 94 ||||||||||||||||||| |||| Sbjct: 7131291 attaattaattaattacatcacaa 7131314
>emb|BX842241.1|CNS0B0PM Oryza sativa chromosome 12, . Partial sequence from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 45687 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 attaattaattaattacattacaa 94 ||||||||||||||||||| |||| Sbjct: 39712 attaattaattaattacatcacaa 39735
>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07, complete sequence Length = 167895 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 cgccagcagcccaccaccat 375 |||||||||||||||||||| Sbjct: 130757 cgccagcagcccaccaccat 130738
>emb|CR846077.10| Zebrafish DNA sequence from clone DKEYP-11E3 in linkage group 14, complete sequence Length = 44568 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 23880 attaattaattaattacatt 23861
>emb|AL672062.4| Mouse DNA sequence from clone RP23-34D17 on chromosome X, complete sequence Length = 199306 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attaattaattaattacatt 90 |||||||||||||||||||| Sbjct: 136858 attaattaattaattacatt 136839
>emb|AL833778.5| Mouse DNA sequence from clone RP23-404M22 on chromosome X, complete sequence Length = 199554 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 aattaattaattacattacaataa 97 |||||||||||||||||| ||||| Sbjct: 54068 aattaattaattacattaaaataa 54045
>gb|AC009994.10| Homo sapiens chromosome 17, clone RP11-87N3, complete sequence Length = 188552 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 acattaattaattaattacattac 92 |||||||||||||||||| ||||| Sbjct: 76527 acattaattaattaattaaattac 76504 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,060,788 Number of Sequences: 3902068 Number of extensions: 4060788 Number of successful extensions: 189465 Number of sequences better than 10.0: 101 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 188590 Number of HSP's gapped (non-prelim): 876 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)