>PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein)
          Length = 386

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 23/45 (51%), Positives = 37/45 (82%)
 Frame = -3

Query: 421 QDAEASGQSDMSKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASL 287
           + +EA+G  +   +  +++F++S+L+SLPGVDPNDP+VK+LLASL
Sbjct: 322 ESSEATGAGN--NLLGNQAFISSVLSSLPGVDPNDPAVKELLASL 364

>PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein) (Antisecretory
           factor 1) (AF) (ASF)
          Length = 377

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 17/50 (34%), Positives = 32/50 (64%)
 Frame = -3

Query: 427 SVQDAEASGQSDMSKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASLHGQ 278
           ++  +E + + D   V +D  F+ S+L +LPGVDPN+ ++++ + SL  Q
Sbjct: 313 AMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 362

>PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein) (54 kDa subunit of mu particle)
           (p54)
          Length = 396

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = -3

Query: 394 DMSKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASLH 284
           D S+V  D +F+ S+L +LPGVDP   +V+D + SL+
Sbjct: 345 DYSEVIGDPAFLQSVLENLPGVDPQSEAVRDAVGSLN 381

>PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein)
          Length = 376

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = -3

Query: 400 QSDMSKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASLHGQ 278
           + D   V +D  F+ S+L +LPGVDPN+ +++ ++ +L  Q
Sbjct: 321 EEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQ 361

>PSD4_SCHMA (O17453) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A)
          Length = 420

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 382 VFEDRSFVTSILNSLPGVDPNDPSVKDLLASL 287
           V  D  F+ S+L SLPGVD  +  V+  + +L
Sbjct: 367 VMYDAEFLESVLQSLPGVDTQNEDVRKAINAL 398

>ATG3_KLULA (Q6CL19) Autophagy-related protein 3 (Autophagy-related E2-like|
           conjugation enzyme ATG3)
          Length = 302

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 382 LCSYQIDQTPLRPEQTFEE 438
           LC Y  D TPL P+Q FE+
Sbjct: 182 LCGYDNDGTPLSPDQMFED 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,086,621
Number of Sequences: 219361
Number of extensions: 971190
Number of successful extensions: 2350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2350
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)