>Y647_MYCTU (P96936) Hypothetical protein Rv0647c/MT0675|
          Length = 488

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 35/118 (29%), Positives = 55/118 (46%)
 Frame = -1

Query: 622 EDYNAMASALSEMGATGNDIDVDSFAKDLQKIFSSLQELDTEIIVAAARSSDATAVSANV 443
           +D+ A    +  MGA G        AKDL++  + L              S      A++
Sbjct: 371 KDHAAAGKIVVLMGAVGTMKPETQAAKDLERFATPL-----------TMQSLGDMSYADI 419

Query: 442 VVDERQMNALFLDLVRVSESYGLKFPREFALLMKQLLYFDRYTRLLAPSMNMLRDERI 269
               RQ++AL       +++Y +K PRE  L+ KQ LY +RY +LLAP   M+ D ++
Sbjct: 420 ---GRQLSAL-------ADAYDVKLPRELVLIGKQFLYVERYMKLLAPRWQMMSDPQL 467

>UBIB_PASMU (Q9CKD4) Probable ubiquinone biosynthesis protein ubiB|
          Length = 527

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 27/116 (23%), Positives = 45/116 (38%)
 Frame = -1

Query: 634 SFATEDYNAMASALSEMGATGNDIDVDSFAKDLQKIFSSLQELDTEIIVAAARSSDATAV 455
           +F   DY  +A      G T  D ++D F +  +++         E I A   S      
Sbjct: 339 AFFNRDYRRVAEMHVASGWTPKDTNIDDFEQAFREV--------CEPIFAKPLS------ 384

Query: 454 SANVVVDERQMNALFLDLVRVSESYGLKFPREFALLMKQLLYFDRYTRLLAPSMNM 287
                  E     + L+L  V+  Y ++   +  LL K LLY +   R L P +++
Sbjct: 385 -------EISFGHVLLNLFNVAREYNMEVQPQLVLLQKTLLYIEGLGRQLYPQLDL 433

>UBIB_HAEDU (Q7VN62) Probable ubiquinone biosynthesis protein ubiB|
          Length = 542

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 27/116 (23%), Positives = 47/116 (40%)
 Frame = -1

Query: 634 SFATEDYNAMASALSEMGATGNDIDVDSFAKDLQKIFSSLQELDTEIIVAAARSSDATAV 455
           +F   DY  +A    E G T  D DVD+F +  + +         E I A          
Sbjct: 334 AFFNRDYRRVALMHIESGWTPADTDVDAFEEAFRTV--------CEPIFAKP-------- 377

Query: 454 SANVVVDERQMNALFLDLVRVSESYGLKFPREFALLMKQLLYFDRYTRLLAPSMNM 287
                + E     + L+L  V+  + ++   +  LL K LLY +   R + P++++
Sbjct: 378 -----LAEISFGQVLLNLFNVARQFNMEVQPQLVLLQKTLLYIEGLGRQVYPALDL 428

>PAN2_YEAST (P53010) PAB-dependent poly(A)-specific ribonuclease subunit PAN2|
           (EC 3.1.13.4) (PAB1P-dependent poly(A)-nuclease)
          Length = 1115

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 350 KSEFPRKFQPV*LANPYQIKKQCIHLPLVYNNISGYSCSIRTSCSC-HYNFSIQ 508
           K   P+KF    L+   + + Q ++  +  N   G    IRT CSC HY+ +++
Sbjct: 615 KRNMPQKFNRFLLSQLIKEEAQTVNHNITLNQCFGLETEIRTECSCDHYDTTVK 668

>RAP1_YEAST (P11938) DNA-binding protein RAP1 (SBF-E) (Repressor/activator|
           site-binding protein) (TUF)
          Length = 827

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 487 AAARSSDATAVSANVVVDERQMN---ALFLDLVRVSESYGLKFPREFA 353
           AAA +S++ A+  N ++DE  MN   +L  DL  +S S   ++P E A
Sbjct: 623 AAAAASNSYAIPENELLDEDTMNFISSLKNDLSNISNSLPFEYPHEIA 670

>VE1_BPV5 (Q705G8) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 626

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
 Frame = +3

Query: 99  VCSYVVHFYAGRMKLYTVLAWLHKL-----VTMSLVHVLQQFLK*WTLEPI 236
           VC+ V H+    M+  T+ A++HK+     VT S + V+ QFLK   +EPI
Sbjct: 380 VCTMVHHYQRAIMRSMTMSAYVHKMCERVNVTGSWL-VIMQFLKFHGIEPI 429

>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = +3

Query: 408 RNSAFICLSSTTTLA---DTAVASELLAAATIISVSNSCSDENI 530
           RN   +C+SSTT +A   +  VA E+LAA  ++ + +  +D+++
Sbjct: 229 RNDKAVCISSTTFIAHLCNQQVAHEMLAAQILLLLLHKPTDDSV 272


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,434,294
Number of Sequences: 219361
Number of extensions: 1528985
Number of successful extensions: 4408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4408
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)