ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63p17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477156.1| Oryza sativa (japonica cultivar-group), mRNA 375 e-100
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
3dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
4gb|DQ226644.1| Boechera divaricarpa isolate SLW-5-E07 mRNA sequence 52 0.002
5gb|AC111132.7| Mus musculus chromosome 3, clone RP23-340B7, comp... 44 0.55
6dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 44 0.55
7gb|AC104697.2| Homo sapiens BAC clone RP11-454B3 from 2, complet... 44 0.55
8gb|AC153851.27| Mus musculus 6 BAC RP23-61N4 (Roswell Park Cance... 42 2.2
9gb|AE000663.1|MMAE000663 Mus musculus TCR beta locus from bases ... 42 2.2
10gb|AC005368.1| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL... 42 2.2
11ref|XM_418746.1| PREDICTED: Gallus gallus similar to DNA-binding... 42 2.2
12gb|AC133201.2| Mus musculus BAC clone RP23-74A8 from chromosome ... 42 2.2
13gb|AC098482.2| Homo sapiens chromosome 3 clone RP11-839L21, comp... 42 2.2
14gb|AC008781.7| Homo sapiens chromosome 5 clone CTD-2024I7, compl... 42 2.2
15gb|AC115771.13| Mus musculus chromosome 19, clone RP23-116D4, co... 42 2.2
16emb|CR974477.12| Pig DNA sequence from clone CH242-217L7 on chro... 42 2.2
17gb|AC161768.25| Mus musculus 6 BAC RP23-37C14 (Roswell Park Canc... 42 2.2
18ref|XM_642088.1| Dictyostelium discoideum hypothetical protein (... 40 8.6
19gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 8.6
20gb|AC127592.6| Mus musculus BAC clone RP23-330A5 from chromosome... 40 8.6
21gb|AC102745.10| Mus musculus chromosome 17, clone RP24-371L2, co... 40 8.6
22gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, com... 40 8.6
23gb|AC145076.8| Mus musculus chromosome 10, clone RP24-528G5, com... 40 8.6
24gb|AY176046.1| Mus musculus thyroid hormone receptor associated ... 40 8.6
25gb|AC127579.4| Mus musculus BAC clone RP23-434O19 from chromosom... 40 8.6
26gb|AC087430.3| Homo sapiens chromosome 3 clone RP11-242C8 map 3p... 40 8.6
27gb|U88177.1| Caenorhabditis elegans cosmid F53E10, complete sequ... 40 8.6
28gb|AC114403.15| Mus musculus chromosome 1, clone RP23-197H1, com... 40 8.6
29emb|BX927075.13| Zebrafish DNA sequence from clone CH211-234G3 i... 40 8.6
30emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on ch... 40 8.6
31gb|AC164298.2| Mus musculus BAC clone RP23-347H20 from chromosom... 40 8.6
32emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 8.6
33emb|BX284749.1|NCB10C3 Neurospora crassa DNA linkage group II BA... 40 8.6
34gb|AC107965.4| Homo sapiens chromosome 8, clone CTD-2332A4, comp... 40 8.6
35emb|BX294178.13| Zebrafish DNA sequence from clone CH211-271C18 ... 40 8.6
36gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, com... 40 8.6
37gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence 40 8.6
38gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p... 40 8.6
39emb|BX255955.3| Zebrafish DNA sequence from clone CH211-249G22 i... 40 8.6
40emb|Z17126.1|HS248ZC1 H. sapiens (D19S225) DNA segment containin... 40 8.6
41gb|AC155257.1| Mus musculus BAC clone RP24-109N5 from 16, comple... 40 8.6
42emb|CR318656.3| Zebrafish DNA sequence from clone CH211-88D2 in ... 40 8.6
43emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in... 40 8.6
44gb|AC007773.1|AC007773 Homo sapiens chromosome 19, BAC 275282 (C... 40 8.6
45emb|BX571725.1| Carp DNA sequence from clone carpf-118, complete... 40 8.6
46emb|CT010573.10| Mouse DNA sequence from clone RP23-238K22 on ch... 40 8.6
47emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chr... 40 8.6 
>ref|XM_477156.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1698

 Score =  375 bits (189), Expect = e-100
 Identities = 321/365 (87%)
 Strand = Plus / Minus

                                                                        
Query: 264  atgttaatcctctcatctctcagcatgttcatgctgggagccagcagtctcgtgtaccga 323
            ||||||| ||||||||||| ||||||||||||||||||||||| || ||| ||||| |||
Sbjct: 1655 atgttaaccctctcatctcgcagcatgttcatgctgggagccaacaatcttgtgtagcga 1596

                                                                        
Query: 324  tcaaaataaagaagctgcttcatgagaagagcgaattccctaggaaatttcagcccgtat 383
            |||||||| |||||||||||||| |||||||||||||| | |||||||||||  || || 
Sbjct: 1595 tcaaaatacagaagctgcttcatcagaagagcgaattcgcgaggaaatttcaatccatac 1536

                                                                        
Query: 384  gactcgctaacccttaccagatcaagaaacagtgcattcatctgcctctcgtctacaaca 443
            |||||||| ||||| |||||||||||||||| |||||||||||| |||||||| || |||
Sbjct: 1535 gactcgctgaccctcaccagatcaagaaacaatgcattcatctgtctctcgtcaacgaca 1476

                                                                        
Query: 444  acattagcggatacagctgtagcatcagaacttcttgcagctgccactataatttcagta 503
            |||||||| ||||| ||||||||||||| | ||||||| | ||| ||||| | |||||||
Sbjct: 1475 acattagccgatactgctgtagcatcaggagttcttgctgttgcaactatgacttcagta 1416

                                                                        
Query: 504  tccaactcctgtagcgatgagaatatcttttgcaagtcctttgcaaaggagtcaacatct 563
            ||||| |||||||  ||||||||||| |||| |||||||||||||||    | ||||| |
Sbjct: 1415 tccaaatcctgtattgatgagaatattttttccaagtcctttgcaaattcattaacattt 1356

                                                                        
Query: 564  atatcattccctgtagcacccatttcggaaagggccgatgccatagcattgtaatcctca 623
            |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct: 1355 atatcattccctgtagcacccatttcagaaagggctgatgccatagcattataatcgtca 1296

                 
Query: 624  gttgc 628
            |||||
Sbjct: 1295 gttgc 1291
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  147 bits (74), Expect = 5e-32
 Identities = 119/134 (88%)
 Strand = Plus / Plus

                                                                           
Query: 264     atgttaatcctctcatctctcagcatgttcatgctgggagccagcagtctcgtgtaccga 323
               ||||||| ||||||||||| ||||||||||||||||||||||| || ||| ||||| |||
Sbjct: 7185266 atgttaaccctctcatctcgcagcatgttcatgctgggagccaacaatcttgtgtagcga 7185325

                                                                           
Query: 324     tcaaaataaagaagctgcttcatgagaagagcgaattccctaggaaatttcagcccgtat 383
               |||||||| |||||||||||||| |||||||||||||| | |||||||||||  || || 
Sbjct: 7185326 tcaaaatacagaagctgcttcatcagaagagcgaattcgcgaggaaatttcaatccatac 7185385

                             
Query: 384     gactcgctaaccct 397
               |||||||| |||||
Sbjct: 7185386 gactcgctgaccct 7185399



 Score =  123 bits (62), Expect = 7e-25
 Identities = 98/110 (89%)
 Strand = Plus / Plus

                                                                           
Query: 519     gatgagaatatcttttgcaagtcctttgcaaaggagtcaacatctatatcattccctgta 578
               ||||||||||| |||| |||||||||||||||    | ||||| ||||||||||||||||
Sbjct: 7186121 gatgagaatattttttccaagtcctttgcaaattcattaacatttatatcattccctgta 7186180

                                                                 
Query: 579     gcacccatttcggaaagggccgatgccatagcattgtaatcctcagttgc 628
               ||||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 7186181 gcacccatttcagaaagggctgatgccatagcattataatcgtcagttgc 7186230



 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                           
Query: 399     accagatcaagaaacagtgcattcatctgcctctcgtctacaacaacattagcggataca 458
               |||||||||||||||| |||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 7185583 accagatcaagaaacaatgcattcatctgtctctcgtcaacgacaacattagccgatact 7185642

                                                                       
Query: 459     gctgtagcatcagaacttcttgcagctgccactataatttcagtatccaactcctg 514
               ||||||||||||| | ||||||| | ||| ||||| | |||||||||||| |||||
Sbjct: 7185643 gctgtagcatcaggagttcttgctgttgcaactatgacttcagtatccaaatcctg 7185698
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>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0016A21
          Length = 144076

 Score =  147 bits (74), Expect = 5e-32
 Identities = 119/134 (88%)
 Strand = Plus / Plus

                                                                         
Query: 264   atgttaatcctctcatctctcagcatgttcatgctgggagccagcagtctcgtgtaccga 323
             ||||||| ||||||||||| ||||||||||||||||||||||| || ||| ||||| |||
Sbjct: 25750 atgttaaccctctcatctcgcagcatgttcatgctgggagccaacaatcttgtgtagcga 25809

                                                                         
Query: 324   tcaaaataaagaagctgcttcatgagaagagcgaattccctaggaaatttcagcccgtat 383
             |||||||| |||||||||||||| |||||||||||||| | |||||||||||  || || 
Sbjct: 25810 tcaaaatacagaagctgcttcatcagaagagcgaattcgcgaggaaatttcaatccatac 25869

                           
Query: 384   gactcgctaaccct 397
             |||||||| |||||
Sbjct: 25870 gactcgctgaccct 25883



 Score =  123 bits (62), Expect = 7e-25
 Identities = 98/110 (89%)
 Strand = Plus / Plus

                                                                         
Query: 519   gatgagaatatcttttgcaagtcctttgcaaaggagtcaacatctatatcattccctgta 578
             ||||||||||| |||| |||||||||||||||    | ||||| ||||||||||||||||
Sbjct: 26605 gatgagaatattttttccaagtcctttgcaaattcattaacatttatatcattccctgta 26664

                                                               
Query: 579   gcacccatttcggaaagggccgatgccatagcattgtaatcctcagttgc 628
             ||||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 26665 gcacccatttcagaaagggctgatgccatagcattataatcgtcagttgc 26714



 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                         
Query: 399   accagatcaagaaacagtgcattcatctgcctctcgtctacaacaacattagcggataca 458
             |||||||||||||||| |||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 26067 accagatcaagaaacaatgcattcatctgtctctcgtcaacgacaacattagccgatact 26126

                                                                     
Query: 459   gctgtagcatcagaacttcttgcagctgccactataatttcagtatccaactcctg 514
             ||||||||||||| | ||||||| | ||| ||||| | |||||||||||| |||||
Sbjct: 26127 gctgtagcatcaggagttcttgctgttgcaactatgacttcagtatccaaatcctg 26182
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>gb|DQ226644.1| Boechera divaricarpa isolate SLW-5-E07 mRNA sequence
          Length = 693

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                       
Query: 309 agtctcgtgtaccgatcaaaataaagaagctgcttcatgagaagagcgaattccctagga 368
           ||||||||||| ||||| ||||| |||||||||||||  ||||| || || || || || 
Sbjct: 250 agtctcgtgtatcgatcgaaatacagaagctgcttcaatagaagtgcaaactctcttggg 309

                                     
Query: 369 aatttcagcccgtatgactcgctaac 394
           || || ||||| ||||| ||||||||
Sbjct: 310 aacttaagcccatatgattcgctaac 335
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>gb|AC111132.7| Mus musculus chromosome 3, clone RP23-340B7, complete sequence
          Length = 205647

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 138    aaattatatacagttctagcat 159
              ||||||||||||||||||||||
Sbjct: 129551 aaattatatacagttctagcat 129530
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 330     taaagaagctgcttcatgagaa 351
               ||||||||||||||||||||||
Sbjct: 1468869 taaagaagctgcttcatgagaa 1468890
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>gb|AC104697.2| Homo sapiens BAC clone RP11-454B3 from 2, complete sequence
          Length = 159797

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 400    ccagatcaagaaacagtgcatt 421
              ||||||||||||||||||||||
Sbjct: 122705 ccagatcaagaaacagtgcatt 122726
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>gb|AC153851.27| Mus musculus 6 BAC RP23-61N4 (Roswell Park Cancer Institute (C57BL/6J
            Female) Mouse BAC Library) complete sequence
          Length = 217854

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 7    tatatttttaaattcctggct 27
            |||||||||||||||||||||
Sbjct: 1812 tatatttttaaattcctggct 1792
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>gb|AE000663.1|MMAE000663 Mus musculus TCR beta locus from bases 1 to 250611 (section 1 of 3) of
             the complete sequence
          Length = 250611

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tatatttttaaattcctggct 27
             |||||||||||||||||||||
Sbjct: 64697 tatatttttaaattcctggct 64677
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>gb|AC005368.1| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL H158), complete
             sequence
          Length = 118995

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     tttatatttttaaattcctgg 25
             |||||||||||||||||||||
Sbjct: 69795 tttatatttttaaattcctgg 69775
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>ref|XM_418746.1| PREDICTED: Gallus gallus similar to DNA-binding protein SATB1
            (Special AT-rich sequence binding protein 1) (LOC420647),
            mRNA
          Length = 3177

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 469  cagaacttcttgcagctgcca 489
            |||||||||||||||||||||
Sbjct: 1316 cagaacttcttgcagctgcca 1336
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>gb|AC133201.2| Mus musculus BAC clone RP23-74A8 from chromosome 3, complete sequence
          Length = 184783

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      tatttttaaattcctggctca 29
              |||||||||||||||||||||
Sbjct: 108735 tatttttaaattcctggctca 108755
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>gb|AC098482.2| Homo sapiens chromosome 3 clone RP11-839L21, complete sequence
          Length = 211533

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 222   acactagaaccaattcattct 242
             |||||||||||||||||||||
Sbjct: 93615 acactagaaccaattcattct 93595
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>gb|AC008781.7| Homo sapiens chromosome 5 clone CTD-2024I7, complete sequence
          Length = 205516

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     tttatatttttaaattcctgg 25
             |||||||||||||||||||||
Sbjct: 48030 tttatatttttaaattcctgg 48050
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>gb|AC115771.13| Mus musculus chromosome 19, clone RP23-116D4, complete sequence
          Length = 209515

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    tcattctctggtctgcttgct 256
              |||||||||||||||||||||
Sbjct: 170164 tcattctctggtctgcttgct 170184
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>emb|CR974477.12| Pig DNA sequence from clone CH242-217L7 on chromosome 17, complete
            sequence
          Length = 204661

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1    tgattttatatttttaaattc 21
            |||||||||||||||||||||
Sbjct: 3521 tgattttatatttttaaattc 3541
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>gb|AC161768.25| Mus musculus 6 BAC RP23-37C14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 196068

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tatatttttaaattcctggct 27
             |||||||||||||||||||||
Sbjct: 98657 tatatttttaaattcctggct 98637
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>ref|XM_642088.1| Dictyostelium discoideum hypothetical protein (DDB0189420), partial
           mRNA
          Length = 2901

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   tgattttatatttttaaatt 20
           ||||||||||||||||||||
Sbjct: 357 tgattttatatttttaaatt 338
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    cttaccagatcaagaaacag 415
              ||||||||||||||||||||
Sbjct: 374764 cttaccagatcaagaaacag 374745
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>gb|AC127592.6| Mus musculus BAC clone RP23-330A5 from chromosome 16, complete sequence
          Length = 185326

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 41     atccaaaagcaatttctgctccaa 64
              ||||||||||||||||||| ||||
Sbjct: 139284 atccaaaagcaatttctgccccaa 139307
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>gb|AC102745.10| Mus musculus chromosome 17, clone RP24-371L2, complete sequence
          Length = 189211

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    cttaccagatcaagaaacag 415
              ||||||||||||||||||||
Sbjct: 109799 cttaccagatcaagaaacag 109780
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>gb|AC102503.8| Mus musculus chromosome 16, clone RP24-383M8, complete sequence
          Length = 220467

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 41     atccaaaagcaatttctgctccaa 64
              ||||||||||||||||||| ||||
Sbjct: 163338 atccaaaagcaatttctgccccaa 163315
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>gb|AC145076.8| Mus musculus chromosome 10, clone RP24-528G5, complete sequence
          Length = 224534

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 558    acatctatatcattccctgt 577
              ||||||||||||||||||||
Sbjct: 163061 acatctatatcattccctgt 163080
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>gb|AY176046.1| Mus musculus thyroid hormone receptor associated protein 220 (Pparbp)
             gene, complete cds
          Length = 46739

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ttttatatttttaaattcct 23
             ||||||||||||||||||||
Sbjct: 21077 ttttatatttttaaattcct 21096
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>gb|AC127579.4| Mus musculus BAC clone RP23-434O19 from chromosome 14, complete sequence
          Length = 181361

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      tgattttatatttttaaatt 20
              ||||||||||||||||||||
Sbjct: 167030 tgattttatatttttaaatt 167049
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>gb|AC087430.3| Homo sapiens chromosome 3 clone RP11-242C8 map 3p, complete sequence
          Length = 152289

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 552    gagtcaacatctatatcatt 571
              ||||||||||||||||||||
Sbjct: 134467 gagtcaacatctatatcatt 134486
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>gb|U88177.1| Caenorhabditis elegans cosmid F53E10, complete sequence
          Length = 26276

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ttttatatttttaaattcct 23
             ||||||||||||||||||||
Sbjct: 10805 ttttatatttttaaattcct 10786
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>gb|AC114403.15| Mus musculus chromosome 1, clone RP23-197H1, complete sequence
          Length = 221305

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 4      ttttatatttttaaattcctggct 27
              ||||||||||||||||| ||||||
Sbjct: 182598 ttttatatttttaaattactggct 182575
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>emb|BX927075.13| Zebrafish DNA sequence from clone CH211-234G3 in linkage group 3,
             complete sequence
          Length = 182166

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     tgattttatatttttaaatt 20
             ||||||||||||||||||||
Sbjct: 80255 tgattttatatttttaaatt 80236
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>emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on chromosome 6p23-24.3
             Contains the gene for a novel protein isentical to
             ribosomal protein L15 (RPL15), complete sequence
          Length = 190223

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 528   atcttttgcaagtcctttgcaaag 551
             ||||||||||||||||||| ||||
Sbjct: 27832 atcttttgcaagtcctttgaaaag 27855
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>gb|AC164298.2| Mus musculus BAC clone RP23-347H20 from chromosome 14, complete
             sequence
          Length = 203395

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   aaacagtgcattcatctgcc 429
             ||||||||||||||||||||
Sbjct: 58928 aaacagtgcattcatctgcc 58909
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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 452     ggatacagctgtagcatcag 471
               ||||||||||||||||||||
Sbjct: 2761178 ggatacagctgtagcatcag 2761159
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>emb|BX284749.1|NCB10C3 Neurospora crassa DNA linkage group II BAC clone B10C3
          Length = 71352

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 557  aacatctatatcattccctg 576
            ||||||||||||||||||||
Sbjct: 5738 aacatctatatcattccctg 5757
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>gb|AC107965.4| Homo sapiens chromosome 8, clone CTD-2332A4, complete sequence
          Length = 112032

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ttttatatttttaaattcct 23
             ||||||||||||||||||||
Sbjct: 98924 ttttatatttttaaattcct 98943
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>emb|BX294178.13| Zebrafish DNA sequence from clone CH211-271C18 in linkage group 7,
              complete sequence
          Length = 131441

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    ctcatctctcagcatgttca 294
              ||||||||||||||||||||
Sbjct: 106453 ctcatctctcagcatgttca 106434
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>gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, complete sequence
          Length = 168539

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ttttatatttttaaattcct 23
              ||||||||||||||||||||
Sbjct: 116643 ttttatatttttaaattcct 116624
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>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence
          Length = 155710

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  gtatgaaattatatacagtt 152
            ||||||||||||||||||||
Sbjct: 2444 gtatgaaattatatacagtt 2425
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>gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p, complete sequence
          Length = 191566

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 552   gagtcaacatctatatcatt 571
             ||||||||||||||||||||
Sbjct: 25542 gagtcaacatctatatcatt 25561
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>emb|BX255955.3| Zebrafish DNA sequence from clone CH211-249G22 in linkage group 18,
             complete sequence
          Length = 146105

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     tgattttatatttttaaatt 20
             ||||||||||||||||||||
Sbjct: 54676 tgattttatatttttaaatt 54695
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>emb|Z17126.1|HS248ZC1 H. sapiens (D19S225) DNA segment containing (CA) repeat; clone
           AFM248zc1; single read
          Length = 332

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 cagcatgttcatgctgggag 303
           ||||||||||||||||||||
Sbjct: 41  cagcatgttcatgctgggag 60
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>gb|AC155257.1| Mus musculus BAC clone RP24-109N5 from 16, complete sequence
          Length = 185931

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    aattcctcaaatgatggaca 224
              ||||||||||||||||||||
Sbjct: 143542 aattcctcaaatgatggaca 143561
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>emb|CR318656.3| Zebrafish DNA sequence from clone CH211-88D2 in linkage group 22,
             complete sequence
          Length = 87766

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     gattttatatttttaaattc 21
             ||||||||||||||||||||
Sbjct: 46289 gattttatatttttaaattc 46308
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>emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in linkage group 13,
              complete sequence
          Length = 220733

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    ctcatctctcagcatgttca 294
              ||||||||||||||||||||
Sbjct: 117755 ctcatctctcagcatgttca 117736
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>gb|AC007773.1|AC007773 Homo sapiens chromosome 19, BAC 275282 (CIT-B-325L16), complete
             sequence
          Length = 180316

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   cagcatgttcatgctgggag 303
             ||||||||||||||||||||
Sbjct: 62351 cagcatgttcatgctgggag 62370
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>emb|BX571725.1| Carp DNA sequence from clone carpf-118, complete sequence
          Length = 38194

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 530   cttttgcaagtcctttgcaa 549
             ||||||||||||||||||||
Sbjct: 28879 cttttgcaagtcctttgcaa 28860
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>emb|CT010573.10| Mouse DNA sequence from clone RP23-238K22 on chromosome 16, complete
              sequence
          Length = 199723

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    aattcctcaaatgatggaca 224
              ||||||||||||||||||||
Sbjct: 106124 aattcctcaaatgatggaca 106143
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>emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chromosome 11, complete
             sequence
          Length = 183369

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ttttatatttttaaattcct 23
             ||||||||||||||||||||
Sbjct: 60563 ttttatatttttaaattcct 60544


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,746,154
Number of Sequences: 3902068
Number of extensions: 6746154
Number of successful extensions: 140672
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140458
Number of HSP's gapped (non-prelim): 209
length of query: 634
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 611
effective length of database: 17,143,297,704
effective search space: 10474554897144
effective search space used: 10474554897144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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