ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63p15 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC_CHLPN (Q9Z999) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 33.1 bits (74), Expect = 0.27 Identities = 17/70 (24%), Positives = 38/70 (54%) Frame = -2 Query: 408 HIDISRQARLQASIVSPSSASTVMPKNHLIPGQIPEHFNLQQKIFSVLRDPAYSALEHGV 229 H+ +S +A+L+A ++ + + +P + P IP ++ ++ ++ DP Y EHG Sbjct: 472 HVPLSVEAQLEAKVLMMAPDNIFLPSSGK-PVAIPSK-DMTLGLYYLMADPTYFPEEHGG 529 Query: 228 SLKLFRSAVD 199 K+F+ ++ Sbjct: 530 KTKIFKDEIE 539
>RPOC_CHLCV (Q822J2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 32.3 bits (72), Expect = 0.46 Identities = 17/70 (24%), Positives = 37/70 (52%) Frame = -2 Query: 408 HIDISRQARLQASIVSPSSASTVMPKNHLIPGQIPEHFNLQQKIFSVLRDPAYSALEHGV 229 H+ +S +A+L+A ++ + + +P + P P ++ I+ ++ DP Y +HG Sbjct: 472 HVPLSIEAQLEAKVLMMAPDNIFLPSSGK-PVATPSK-DMTLGIYYLMADPTYFPEDHGG 529 Query: 228 SLKLFRSAVD 199 +K+FR + Sbjct: 530 KIKIFRDVTE 539
>RPOC_CHLMU (Q9PK79) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 32.0 bits (71), Expect = 0.61 Identities = 18/70 (25%), Positives = 37/70 (52%) Frame = -2 Query: 408 HIDISRQARLQASIVSPSSASTVMPKNHLIPGQIPEHFNLQQKIFSVLRDPAYSALEHGV 229 H+ +S +A+L+A ++ + + +P + P P ++ I+ ++ DP Y EHG Sbjct: 472 HVPLSIEAQLEAKVLMMAPDNIFLPSSGK-PVATPSK-DMTLGIYYLMADPTYFPEEHGG 529 Query: 228 SLKLFRSAVD 199 K+F+ V+ Sbjct: 530 KTKVFKDEVE 539
>RPOC_CHLTR (O84316) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 31.2 bits (69), Expect = 1.0 Identities = 18/70 (25%), Positives = 36/70 (51%) Frame = -2 Query: 408 HIDISRQARLQASIVSPSSASTVMPKNHLIPGQIPEHFNLQQKIFSVLRDPAYSALEHGV 229 H+ +S +A+L+A ++ + + +P + P P ++ I+ ++ DP Y EHG Sbjct: 472 HVPLSIEAQLEAKVLMMAPDNIFLPSSGK-PVATPSK-DMTLGIYYLMADPTYFPEEHGG 529 Query: 228 SLKLFRSAVD 199 K F+ V+ Sbjct: 530 KTKAFKDEVE 539
>RPOC_CHLTA (Q3KM48) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 31.2 bits (69), Expect = 1.0 Identities = 18/70 (25%), Positives = 36/70 (51%) Frame = -2 Query: 408 HIDISRQARLQASIVSPSSASTVMPKNHLIPGQIPEHFNLQQKIFSVLRDPAYSALEHGV 229 H+ +S +A+L+A ++ + + +P + P P ++ I+ ++ DP Y EHG Sbjct: 472 HVPLSIEAQLEAKVLMMAPDNIFLPSSGK-PVATPSK-DMTLGIYYLMADPTYFPEEHGG 529 Query: 228 SLKLFRSAVD 199 K F+ V+ Sbjct: 530 KTKAFKDEVE 539
>RPOC_CHLAB (Q5L5I4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/70 (22%), Positives = 37/70 (52%) Frame = -2 Query: 408 HIDISRQARLQASIVSPSSASTVMPKNHLIPGQIPEHFNLQQKIFSVLRDPAYSALEHGV 229 H+ +S +A+L+A ++ + + +P + P P ++ I+ ++ DP Y +HG Sbjct: 472 HVPLSIEAQLEAKVLMMAPDNIFLPSSGK-PVATPSK-DMTLGIYYLMADPTYFPEDHGG 529 Query: 228 SLKLFRSAVD 199 +K+F+ + Sbjct: 530 KIKIFKDVTE 539
>STX18_RAT (Q68FW4) Syntaxin-18| Length = 334 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -1 Query: 337 AKKSSHSRTDSGTF*PSAKDI-FSPARPSLQRLGTWGESKAVSQRS 203 ++KSSH+ + P+A+D+ P S LGTWG+ K + S Sbjct: 182 SEKSSHNASQDSEEKPAAEDLPEKPLAESQPELGTWGDGKGEDELS 227
>DPOD2_ARATH (O48520) DNA polymerase delta small subunit (EC 2.7.7.7)| Length = 456 Score = 30.0 bits (66), Expect = 2.3 Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Frame = -2 Query: 417 IYAHIDISRQARLQASIVSPSSA--STVMPKNHLIPGQIPEHFNLQQKIFSVLRDP---- 256 I H+ + L A IV A S P+ LI GQ+ FNL K S L +P Sbjct: 218 ITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRK-LINGQVLITFNLASKDQSTLYEPIKEL 276 Query: 255 --AYSALEHGVSLKLFRSAVDASQDVIMYYPFSHG*FY*VSAYNTLTRQCFFLYSTDV 88 S + GVS+ + D + + P + F S YNT R C +S DV Sbjct: 277 DIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTF-RSCTNPHSFDV 333
>YR858_MIMIV (Q5UQQ5) Putative ankyrin repeat protein R858| Length = 424 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +1 Query: 58 YLTNHYLLRYHVRGIKKKTLSCQCIVGRNLIELSMRKWVVHD 183 Y+ NH++ RY I L C CI N L + K +V++ Sbjct: 97 YIKNHFITRYDFDKISMTHLMCACIYSINDSNLELVKLLVNN 138
>SFC1_YEAST (P33303) Succinate/fumarate mitochondrial transporter (Regulator of| acetyl-CoA synthetase activity) Length = 322 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = -2 Query: 384 RLQASIVSPSSASTVMPKNHLIPGQIPEHFNLQQKIFSVLRDPAYSALEHGVSLKLFRSA 205 RLQA ++PS P P++ N ++++++ SAL GVSL R A Sbjct: 138 RLQAQHLTPSE-----------PNAGPKYNNAIHAAYTIVKEEGVSALYRGVSLTAARQA 186 Query: 204 VDASQDVIMY 175 + + +Y Sbjct: 187 TNQGANFTVY 196
>UXUA_BRUSU (Q8FVM2) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 401 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/45 (26%), Positives = 20/45 (44%) Frame = -1 Query: 292 PSAKDIFSPARPSLQRLGTWGESKAVSQRSGCKPRCYHVLPIFSW 158 P + DI + + +G W S R+ K CY+ +P+ W Sbjct: 71 PVSDDIKRSGKAARHDIGAWIASMEALARNDIKVICYNFMPVVDW 115
>UXUA_BRUME (Q8YCQ4) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 401 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/45 (26%), Positives = 20/45 (44%) Frame = -1 Query: 292 PSAKDIFSPARPSLQRLGTWGESKAVSQRSGCKPRCYHVLPIFSW 158 P + DI + + +G W S R+ K CY+ +P+ W Sbjct: 71 PVSDDIKRSGKAARHDIGAWIASMEALARNDIKVICYNFMPVVDW 115
>IPYR_AQUAE (O67501) Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate| phospho-hydrolase) (PPase) Length = 178 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -2 Query: 312 QIPEHFNLQQKIFSVLRDPAYSALEHGVSLKLFRSAVDASQDVIMYYPFSHG 157 Q+P N + I+ V+ P SA+++ + VD MYYPF++G Sbjct: 5 QLPPGKNPPEDIYVVIEIPQGSAVKYELDKDTGVIFVDRFLFTAMYYPFNYG 56
>CTL4_RAT (Q6MG71) Choline transporter-like protein 4 (Solute carrier family| 44 member 4) Length = 707 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Frame = -1 Query: 259 PSLQRLGTWGESKAVSQRSGCKPRCYHVLPIF---SWIILLGFCLQYTDTTMFFSLFH 95 P L+ T S ++QRS + Y +L +F +W++ LG C+ F+ FH Sbjct: 417 PELKCTFTGYSSSGLAQRSLFNLQIYGILGLFWTVNWVLALGQCVLAGAFASFYWAFH 474
>YR602_MIMIV (Q5UP61) Putative ankyrin repeat protein R602| Length = 304 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/42 (26%), Positives = 23/42 (54%) Frame = +1 Query: 34 MAXINSSVYLTNHYLLRYHVRGIKKKTLSCQCIVGRNLIELS 159 M I + + N+Y+LRY ++ + KK + G ++ ++S Sbjct: 197 MVSIGADINAGNNYVLRYAIKNLDKKMIELAINAGASINDIS 238
>POLG_BSTV1 (Q65730) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3093 Score = 28.1 bits (61), Expect = 8.8 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -1 Query: 259 PSLQRLGTWGESKAVSQRSGCKP 191 PS+Q GTW +++ ++ + GC P Sbjct: 1172 PSVQSFGTWLDTRVLAGQQGCDP 1194 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,020,318 Number of Sequences: 219361 Number of extensions: 1230664 Number of successful extensions: 2952 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2907 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2951 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
