ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63p09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PNCB_VIBCH (Q9KN67) Nicotinate phosphoribosyltransferase (EC 2.4... 30 4.9
2MYH10_RAT (Q9JLT0) Myosin-10 (Myosin heavy chain, nonmuscle IIb)... 29 8.3
3MYH10_MOUSE (Q61879) Myosin-10 (Myosin heavy chain, nonmuscle II... 29 8.3
4MYH10_HUMAN (P35580) Myosin-10 (Myosin heavy chain, nonmuscle II... 29 8.3
5MYH10_BOVIN (Q27991) Myosin-10 (Myosin heavy chain, nonmuscle II... 29 8.3

>PNCB_VIBCH (Q9KN67) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)|
           (NAPRTase)
          Length = 435

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +2

Query: 314 FQMSPI-KLAHFWHILDQALISEKNGALLGQTNWLIPFHK----AYVTRFAVALFYTSKN 478
           F + PI  +AH W +  QAL++E++   +    WL  F      A      +  F    N
Sbjct: 220 FDLKPIGTIAHEWFMGHQALVNERDSQQVALERWLTAFDGMLAIAPTDTLTIDAFLNDFN 279

Query: 479 RH*KSYY 499
           RH  + Y
Sbjct: 280 RHLANAY 286



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>MYH10_RAT (Q9JLT0) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle|
           myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB)
           (Cellular myosin heavy chain, type B) (Nonmuscle myosin
           heavy chain-B) (NMMHC-B)
          Length = 1976

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 367 INFRKERSTSRSDQLAHSVSQSICH 441
           I+F+KER+T ++    ++V+Q +CH
Sbjct: 359 ISFKKERNTDQASMPENTVAQKLCH 383



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>MYH10_MOUSE (Q61879) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle|
           myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB)
           (Cellular myosin heavy chain, type B) (Nonmuscle myosin
           heavy chain-B) (NMMHC-B)
          Length = 1976

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 367 INFRKERSTSRSDQLAHSVSQSICH 441
           I+F+KER+T ++    ++V+Q +CH
Sbjct: 359 ISFKKERNTDQASMPENTVAQKLCH 383



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>MYH10_HUMAN (P35580) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle|
           myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB)
           (Cellular myosin heavy chain, type B) (Nonmuscle myosin
           heavy chain-B) (NMMHC-B)
          Length = 1976

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 367 INFRKERSTSRSDQLAHSVSQSICH 441
           I+F+KER+T ++    ++V+Q +CH
Sbjct: 359 ISFKKERNTDQASMPENTVAQKLCH 383



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>MYH10_BOVIN (Q27991) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle|
           myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB)
           (Cellular myosin heavy chain, type B) (Nonmuscle myosin
           heavy chain-B) (NMMHC-B)
          Length = 1976

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 367 INFRKERSTSRSDQLAHSVSQSICH 441
           I+F+KER+T ++    ++V+Q +CH
Sbjct: 359 ISFKKERNTDQASMPENTVAQKLCH 383


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,681,799
Number of Sequences: 219361
Number of extensions: 1285788
Number of successful extensions: 2424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2424
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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