ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63p07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1017 bits (513), Expect = 0.0 Identities = 548/553 (99%), Gaps = 5/553 (0%) Strand = Plus / Minus Query: 1 tttagagatatattaacaaaa-atgcccagcaatcgcttggatgcgatgcggacttag-g 58 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct: 1682 tttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagtg 1623 Query: 59 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt- 117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1622 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtt 1563 Query: 118 cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggca 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1562 cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggca 1503 Query: 178 -cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggt 236 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1502 tcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggt 1443 Query: 237 gt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagca 295 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 gttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagca 1383 Query: 296 tcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcc 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 tcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcc 1323 Query: 356 tgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgc 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 tgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgc 1263 Query: 416 tcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccg 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 tcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccg 1203 Query: 476 gtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaa 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 gtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaa 1143 Query: 536 aagtcaatggatt 548 ||||||||||||| Sbjct: 1142 aagtcaatggatt 1130
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 801 bits (404), Expect = 0.0 Identities = 515/548 (93%), Gaps = 8/548 (1%) Strand = Plus / Minus Query: 8 atatattaacaaaa-atgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 60 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687 Query: 61 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 120 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628 Query: 121 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 180 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568 Query: 181 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 240 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508 Query: 241 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 300 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 507 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 448 Query: 301 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 388 Query: 361 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 420 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 387 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 328 Query: 421 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 480 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 327 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 268 Query: 481 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 540 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 267 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 208 Query: 541 aatggatt 548 ||||||| Sbjct: 207 gatggatt 200
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 801 bits (404), Expect = 0.0 Identities = 515/548 (93%), Gaps = 8/548 (1%) Strand = Plus / Minus Query: 8 atatattaacaaaa-atgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 60 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 61 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 120 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 121 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 180 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 181 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 240 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358 Query: 241 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 300 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298 Query: 301 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238 Query: 361 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 420 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178 Query: 421 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 480 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118 Query: 481 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 540 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1117 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 1058 Query: 541 aatggatt 548 ||||||| Sbjct: 1057 gatggatt 1050
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Minus Query: 206 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 266 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 326 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 386 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 446 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 506 tcgtacacccgagcacgcagagcaccgaaaaagtc 540 ||||||||||||||||||||||||||||||||||| Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 402 bits (203), Expect = e-109 Identities = 210/211 (99%), Gaps = 1/211 (0%) Strand = Plus / Minus Query: 1 tttagagatatattaacaaaa-atgcccagcaatcgcttggatgcgatgcggacttaggt 59 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 7733 tttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggt 7674 Query: 60 aggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7673 aggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 7614 Query: 120 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7613 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 7554 Query: 180 ggcaaagtaccttgctgtgctcctttacctc 210 ||||||||||||||||||||||||||||||| Sbjct: 7553 ggcaaagtaccttgctgtgctcctttacctc 7523 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 332 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 391 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 392 ttctcgactgtcatctttggctgctcgaa 420 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 481 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 540 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 541 aatgga 546 ||||| Sbjct: 3752 gatgga 3747
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 613 bits (309), Expect = e-172 Identities = 479/532 (90%), Gaps = 9/532 (1%) Strand = Plus / Minus Query: 22 atgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga- 74 |||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1592 atgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcagaa 1533 Query: 75 tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgtt 134 || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 1532 taattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggtt 1473 Query: 135 gggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgc 194 |||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1472 gggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgt 1413 Query: 195 tgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttct 254 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |||| Sbjct: 1412 tgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttct 1355 Query: 255 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 314 ||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| Sbjct: 1354 aaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggc 1295 Query: 315 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 374 ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1294 tcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgt 1235 Query: 375 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 434 | |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||| Sbjct: 1234 ggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgt 1175 Query: 435 cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 494 ||||||||||||||||||||||||| |||||||| |||||||| || |||||||||| Sbjct: 1174 cccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgc 1115 Query: 495 gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 546 |||||||| ||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1114 gcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatgga 1063
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 581 bits (293), Expect = e-163 Identities = 293/293 (100%) Strand = Plus / Minus Query: 256 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 316 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 376 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 436 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 496 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggatt 548 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggatt 875 Score = 398 bits (201), Expect = e-108 Identities = 208/209 (99%), Gaps = 1/209 (0%) Strand = Plus / Minus Query: 1 tttagagatatattaacaaaa-atgcccagcaatcgcttggatgcgatgcggacttaggt 59 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1373 tttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggt 1314 Query: 60 aggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1313 aggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 1254 Query: 120 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1253 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 1194 Query: 180 ggcaaagtaccttgctgtgctcctttacc 208 ||||||||||||||||||||||||||||| Sbjct: 1193 ggcaaagtaccttgctgtgctcctttacc 1165
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 521 bits (263), Expect = e-145 Identities = 296/307 (96%) Strand = Plus / Minus Query: 234 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 293 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 294 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 354 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 414 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 473 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 474 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 533 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 534 aaaagtc 540 ||||||| Sbjct: 8 aaaagtc 2
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 387 bits (195), Expect = e-104 Identities = 267/291 (91%) Strand = Plus / Minus Query: 256 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 315 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 316 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 375 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 376 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 435 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 436 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 495 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 496 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 546 |||||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatgga 1073 Score = 176 bits (89), Expect = 5e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 80 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 139 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 140 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 199 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 200 tcctttacc 208 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 149 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 205 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 206 acctcctcct 215 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 255 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 314 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 315 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 374 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 375 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 434 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 435 cccgcgagttcaccagcctcttgccaatgttctc 468 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 545 gatt 548 |||| Sbjct: 1020 gatt 1017
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 149 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 205 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 206 acctcctcct 215 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 255 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 314 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 315 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 374 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 375 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 434 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 435 cccgcgagttcaccagcctcttgccaatgttctc 468 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 545 gatt 548 |||| Sbjct: 1058 gatt 1055
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 149 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 205 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 206 acctcctcct 215 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 255 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 314 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 315 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 374 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 375 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 434 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 435 cccgcgagttcaccagcctcttgccaatgttctc 468 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 545 gatt 548 |||| Sbjct: 1057 gatt 1054
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 149 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 205 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 206 acctcctcct 215 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 255 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 314 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 315 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 374 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 375 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 434 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 435 cccgcgagttcaccagcctcttgccaatgttctc 468 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 545 gatt 548 |||| Sbjct: 841 gatt 838
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 149 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 205 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 206 acctcctcct 215 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 255 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 314 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 315 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 374 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 375 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 434 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 435 cccgcgagttcaccagcctcttgccaatgttctc 468 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 545 gatt 548 |||| Sbjct: 1062 gatt 1059
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 252 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 311 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 312 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 371 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 372 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 431 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 432 cgtcccgcgagttcaccagcctcttgccaatgttctc 468 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 107 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 166 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 167 accttccggcacggg 181 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 534 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 gagttcaccagcctcttgccaatgttctc 468 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 252 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 311 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 312 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 371 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 372 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 431 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 432 cgtcccgcgagttcaccagcctcttgccaatgttctc 468 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 107 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 166 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 167 accttccggcacggg 181 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 534 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 gagttcaccagcctcttgccaatgttctc 468 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 255 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 314 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 315 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 374 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 375 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 434 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 435 cccgcgagttcaccagcctcttgccaatgttctc 468 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 545 gatt 548 |||| Sbjct: 1026 gatt 1023
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 257 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 316 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 317 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 376 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 377 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 437 cgcgagttcaccagcctcttgccaatgttctc 468 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 545 gatt 548 |||| Sbjct: 1021 gatt 1018
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 252 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 311 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 312 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 371 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 372 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 431 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 432 cgtcccgcgagttcaccagcctcttgccaatgttctc 468 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 107 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 166 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 167 accttccggcacggg 181 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 534 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 gagttcaccagcctcttgccaatgttctc 468 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 252 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 311 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 312 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 371 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 372 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 431 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 432 cgtcccgcgagttcaccagcctcttgccaatgttctc 468 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 107 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 166 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 167 accttccggcacggg 181 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 534 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 gagttcaccagcctcttgccaatgttctc 468 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 257 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 316 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 317 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 376 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 377 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 436 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 437 cgcgagttcaccagcctcttgccaatgttctc 468 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 545 gatt 548 |||| Sbjct: 1056 gatt 1053
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 253 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 312 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 313 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 372 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 373 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 432 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 433 gtcccgcgagttcaccagcctcttgcc 459 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 99 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 158 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 159 tcggtgcaaccttc 172 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076 Score = 44.1 bits (22), Expect = 0.48 Identities = 52/62 (83%) Strand = Plus / Minus Query: 487 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 546 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714 Query: 547 tt 548 || Sbjct: 713 tt 712
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 255 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 314 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 315 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 374 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 375 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 434 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 435 cccgcgagttcaccagcctcttgccaatgttctc 468 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 545 gatt 548 |||| Sbjct: 275 gatt 272
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 123 bits (62), Expect = 6e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 255 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 314 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 315 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 374 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 375 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 434 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 435 cccgcgagttcaccagcctcttgccaatgttctc 468 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 149 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 205 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 206 acctcctcct 215 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 485 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 544 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 545 gatt 548 |||| Sbjct: 1069 gatt 1066
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 95 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 154 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 155 ttggtcggtgcaaccttccggcacgggca 183 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 260 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 319 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 320 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 379 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 380 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 439 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 440 gagttcaccagcctcttgcc 459 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 99 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 158 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 159 tcggtgcaaccttc 172 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232 Score = 44.1 bits (22), Expect = 0.48 Identities = 52/62 (83%) Strand = Plus / Minus Query: 487 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 546 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908 Query: 547 tt 548 || Sbjct: 907 tt 906
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 117 bits (59), Expect = 4e-23 Identities = 176/215 (81%) Strand = Plus / Minus Query: 332 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 391 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 392 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 451 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 452 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 511 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 512 acccgagcacgcagagcaccgaaaaagtcaatgga 546 ||||| || ||||| || ||||| ||||| ||||| Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatgga 1028
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 103 bits (52), Expect = 6e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 253 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 312 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 313 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 372 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 373 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 432 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 433 gtcccgcgagttcaccagcctctt 456 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 99 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 158 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 159 tcggtgcaaccttc 172 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377 Score = 44.1 bits (22), Expect = 0.48 Identities = 52/62 (83%) Strand = Plus / Minus Query: 487 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 546 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015 Query: 547 tt 548 || Sbjct: 1014 tt 1013
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 260 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 319 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 320 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 379 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 380 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 439 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 440 gagttcaccagcctctt 456 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 99 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 158 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 159 tcggtgcaaccttc 172 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202 Score = 44.1 bits (22), Expect = 0.48 Identities = 52/62 (83%) Strand = Plus / Minus Query: 487 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 546 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878 Query: 547 tt 548 || Sbjct: 877 tt 876
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 261 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 320 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 321 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 380 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 381 actctagcagcttctcgactgtcatctttggctgctcgaa 420 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 261 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 320 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 321 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 380 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 381 actctagcagcttctcgactgtcatctttggctgctcgaa 420 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 261 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 320 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 321 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 380 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 381 actctagcagcttctcgactgtcatctttggctgctcgaa 420 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 332 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 391 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 392 ttctcgactgtcatctttggctgctcgaa 420 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 481 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 540 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 541 aatgga 546 ||||| Sbjct: 1183 gatgga 1178
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 278 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 337 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 338 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 393 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 89 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 148 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 289 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 348 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 349 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 408 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 409 tggctgctcgaa 420 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 523 cagagcaccgaaaaagtcaatggatt 548 |||||||||||||||||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggatt 1088
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Minus Query: 503 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 546 ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 2680
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Minus Query: 503 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 546 ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 990
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Minus Query: 281 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 330 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 294 catcacccagagctgcctggct 315 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 aaacatcagatattaaaagtg 85 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 atgcagcaagagatggtgggt 236 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 332 agctgcacacgcttgacattgtcctgctc 360 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 aaacatcagatattaaaagtg 85 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 aaacatcagatattaaaagtg 85 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cctttacctcctcctatgca 220 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 catcacccagagctgcctggctca 317 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cctttacctcctcctatgca 220 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 7.4 Identities = 68/84 (80%) Strand = Plus / Minus Query: 290 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 349 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 350 ttgtcctgctcctggacgagcatg 373 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cctttacctcctcctatgca 220 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gtcagcaagctgcacacgct 344 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tcagatattaaaagtggcat 89 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tcagatattaaaagtggcat 89 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tcagatattaaaagtggcat 89 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 catcacccagagctgcctggctca 317 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ttgacattgtcctgctcctg 363 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 catcacccagagctgcctggctca 317 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 98 ggtgtaaaggcagctgccgtcgtcgctc 125 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cctttacctcctcctatgca 220 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 catcacccagagctgcctggctca 317 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 catcacccagagctgcctggctca 317 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 catcacccagagctgcctggctca 317 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tggcatgcttaaaaggtgta 103 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 ttgacattgtcctgctcctg 363 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 catcacccagagctgcctggctca 317 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 cttgctgtgctcctttacctcctc 213 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cctttacctcctcctatgca 220 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>emb|AL824716.8| Mouse DNA sequence from clone RP23-277F20 on chromosome 4, complete sequence Length = 185441 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 agatatattaacaaaaatgc 25 |||||||||||||||||||| Sbjct: 65486 agatatattaacaaaaatgc 65467
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 atcagatattaaaagtggcatgct 92 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,930,815 Number of Sequences: 3902068 Number of extensions: 3930815 Number of successful extensions: 74438 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 74112 Number of HSP's gapped (non-prelim): 271 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
