ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63p06 |
|---|---|
| Clone Library Name | barley_pub |
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 84.7 bits (208), Expect = 2e-16 Identities = 38/85 (44%), Positives = 56/85 (65%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W + + L+ AF QPG + A+VI++R +GRSRGFGF++F + + +AL M+ VEL+G Sbjct: 226 WALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEG 285 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQ 382 RPLRL++A Q P S P S + Sbjct: 286 RPLRLNVAGQKAPVSSPPVVETSPE 310 Score = 44.3 bits (103), Expect = 3e-04 Identities = 18/66 (27%), Positives = 39/66 (59%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + + + L F + ++++R T RSRGF FV+ ++++AK A++ DG ++ G Sbjct: 123 FSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGG 182 Query: 456 RPLRLS 439 R ++++ Sbjct: 183 RTVKVN 188
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 80.9 bits (198), Expect = 3e-15 Identities = 35/73 (47%), Positives = 55/73 (75%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 WGV DAL+T F Q +V A+V+++RD+GRSRGFGFV++ + ++ A++++DGV+L+G Sbjct: 203 WGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNG 262 Query: 456 RPLRLSLAAQNPP 418 R +R+S A PP Sbjct: 263 RAIRVSPAEARPP 275 Score = 55.1 bits (131), Expect = 2e-07 Identities = 32/86 (37%), Positives = 48/86 (55%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 AL FE + VI+++ TGRSRGFGFV+ + ++ +AA Q +G ELDGR LR++ Sbjct: 102 ALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161 Query: 438 LAAQNPPAGSTPSTAQSQQEKTASRG 361 + P S ++ + SRG Sbjct: 162 -SGPPPEKRENSSFRENSSFRGGSRG 186
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 80.9 bits (198), Expect = 3e-15 Identities = 35/73 (47%), Positives = 55/73 (75%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 WGV DAL+T F Q +V A+V+++RD+GRSRGFGFV++ + ++ A++++DGV+L+G Sbjct: 197 WGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNG 256 Query: 456 RPLRLSLAAQNPP 418 R +R+S A PP Sbjct: 257 RAIRVSPAEARPP 269 Score = 56.2 bits (134), Expect = 8e-08 Identities = 32/86 (37%), Positives = 48/86 (55%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 AL FE + VI+++ TGRSRGFGFV+ + ++ +AA Q +G ELDGR LR++ Sbjct: 102 ALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161 Query: 438 LAAQNPPAGSTPSTAQSQQEKTASRG 361 +G P ++ + SRG Sbjct: 162 -------SGPPPEKRENSSFRGGSRG 180
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 76.6 bits (187), Expect = 6e-14 Identities = 35/73 (47%), Positives = 54/73 (73%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 WGV AL++ F Q +V ARVI++RD+GRS+GFGFV++ + Q+ + A++++DG +LDG Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272 Query: 456 RPLRLSLAAQNPP 418 R +R+S A PP Sbjct: 273 RQIRVSEAEARPP 285 Score = 61.2 bits (147), Expect = 2e-09 Identities = 41/111 (36%), Positives = 59/111 (53%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + V + L FE + VI+++ TGRSRGFGFV+ ++ + +AA Q +G ELDG Sbjct: 100 FNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDG 159 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGG 304 RPLR++ A PP ++E SRG P+ +S SG GG Sbjct: 160 RPLRVN-AGPPPP----------KREDGFSRG----PRSSFGSSGSGYGGG 195
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 75.1 bits (183), Expect = 2e-13 Identities = 35/75 (46%), Positives = 52/75 (69%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 WGV AL+ F Q +V ARVI++RD+GRS+GFGFV+ + Q+ + A+ +++G +LDG Sbjct: 266 WGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDG 325 Query: 456 RPLRLSLAAQNPPAG 412 R +R+S A PP G Sbjct: 326 RQIRVSEAEARPPRG 340 Score = 57.8 bits (138), Expect = 3e-08 Identities = 38/112 (33%), Positives = 55/112 (49%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + V + L FE + VI+++ TGRSRGFGFV+ T + +AA Q +G E +G Sbjct: 108 FNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEG 167 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGE 301 RPLR++ A PP P +S S G +E + G +G E Sbjct: 168 RPLRVN--AGPPP----PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSE 213
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 74.3 bits (181), Expect = 3e-13 Identities = 32/72 (44%), Positives = 52/72 (72%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 WGV ALK F Q +V A+V+++RD+GRSRGFGFV++ + ++ A+ +++G++LDG Sbjct: 217 WGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDG 276 Query: 456 RPLRLSLAAQNP 421 R +R+S A + P Sbjct: 277 RSIRVSAAEERP 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 39/117 (33%), Positives = 60/117 (51%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + V + AL FE + VI+++ +GRSRGFGFV+ T ++ +AA Q +G E+DG Sbjct: 97 FSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDG 156 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSN 286 R +R++ A PA S+ + +S G D N+S G GG S+ Sbjct: 157 RAIRVN--AGPAPAKRENSSFGGGRGGNSSYGGGR----DGNSSFGGARGGRSVDSS 207
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 74.3 bits (181), Expect = 3e-13 Identities = 33/72 (45%), Positives = 52/72 (72%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 WGV ALK F Q +V A+V+++RD+GRSRGFGFV++ + ++ A+ +++GV+LDG Sbjct: 216 WGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDG 275 Query: 456 RPLRLSLAAQNP 421 R +R+S A + P Sbjct: 276 RSIRVSAAEERP 287 Score = 56.2 bits (134), Expect = 8e-08 Identities = 40/117 (34%), Positives = 60/117 (51%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + V + AL FE + VI+++ TGRSRGFGFV+ T ++ +AA Q +G E+DG Sbjct: 96 FSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDG 155 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSN 286 R +R++ A PA S+ + +S G D N+S G GG S+ Sbjct: 156 RAIRVN--AGPAPAKRENSSFGGGRGGNSSYGGGR----DGNSSFGGARGGRSVDSS 206
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 70.9 bits (172), Expect = 3e-12 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 8/87 (9%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W + + LK FE G++GARVI+ER T RSRG+G+V F A+ A+Q M G E+DG Sbjct: 177 WSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDG 236 Query: 456 RPLRLSLAAQNPPA--------GSTPS 400 RP+ ++ P G TPS Sbjct: 237 RPINCDMSTSKPAGNNDRAKKFGDTPS 263 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/67 (35%), Positives = 38/67 (56%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 DA+ F +V R+ +T + +GFG+V F ++DAK AL A+ G +D RP+RL Sbjct: 281 DAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRL 340 Query: 441 SLAAQNP 421 ++ P Sbjct: 341 DFSSPRP 347
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 67.8 bits (164), Expect = 3e-11 Identities = 30/73 (41%), Positives = 47/73 (64%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W V L+ F +V ARV+++R+TGRSRGFGFV+ + + A+ A+DG L+G Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG 312 Query: 456 RPLRLSLAAQNPP 418 R +R+++A + PP Sbjct: 313 RAIRVNVAEERPP 325 Score = 53.1 bits (126), Expect = 7e-07 Identities = 30/81 (37%), Positives = 48/81 (59%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + V + AL FE + A VI+ R+T +SRGFGFV+ ++ +A+ A++ + +L+G Sbjct: 159 YDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNG 218 Query: 456 RPLRLSLAAQNPPAGSTPSTA 394 R L ++ AA P GS P A Sbjct: 219 RLLTVNKAA---PRGSRPERA 236
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 66.6 bits (161), Expect = 6e-11 Identities = 35/74 (47%), Positives = 48/74 (64%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 WG +L+ AF +V A+VI +R+TGRSRGFGFV+F+ A AA+ MDG EL+G Sbjct: 44 WGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 Query: 456 RPLRLSLAAQNPPA 415 R +R++ A P A Sbjct: 104 RHIRVNPANDRPSA 117
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 64.3 bits (155), Expect = 3e-10 Identities = 32/63 (50%), Positives = 43/63 (68%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK AF+G V AR++ +RDTG S+GFGFV F T +DAKAA +AM+ E+DG + L Sbjct: 516 ETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTL 572 Query: 441 SLA 433 A Sbjct: 573 DFA 575 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D+L+ FE + ++ GR++GF F+ F + +DAK A+ + + E++GR +RL Sbjct: 428 DSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRL 482 Query: 441 SLA-AQNPPAGSTPSTAQSQ 385 + P G +AQS+ Sbjct: 483 EFSQGGGPQGGGRGGSAQSK 502
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 63.9 bits (154), Expect = 4e-10 Identities = 30/72 (41%), Positives = 45/72 (62%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W V L+ F +V ARV+ +R+TGRSRGFGFV+ + + A+ A+DG LDG Sbjct: 158 WDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDG 217 Query: 456 RPLRLSLAAQNP 421 R +R+++A + P Sbjct: 218 RAVRVNVAEERP 229 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/76 (38%), Positives = 49/76 (64%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + V ++ L F+ + A VI+ R+T RSRGFGFV+ T+++A+ A++ ++G ++DG Sbjct: 64 YDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDG 123 Query: 456 RPLRLSLAAQNPPAGS 409 R L ++ AA P GS Sbjct: 124 RQLTVNKAA---PRGS 136
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 62.8 bits (151), Expect = 8e-10 Identities = 34/108 (31%), Positives = 58/108 (53%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + L+ AF+ P + V+++ TG SRG+GFVSF + DA+ A+ +M G +L+GRPLR+ Sbjct: 175 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 234 Query: 441 SLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEM 298 + AA+ + + Q+ + Q +NN + + G M Sbjct: 235 NWAAKR---DNNNNNNYQQRRNYGNNNRGGFRQYNNNNNNNMNMGMNM 279
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 60.8 bits (146), Expect = 3e-09 Identities = 28/72 (38%), Positives = 44/72 (61%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W + L+ F +V ARV+F+R++GRSRGFGFV+ + + A+ +DG LDG Sbjct: 200 WDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDG 259 Query: 456 RPLRLSLAAQNP 421 R +R++ A + P Sbjct: 260 RTIRVNAAEERP 271 Score = 52.4 bits (124), Expect = 1e-06 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELD 460 + + ++ L F+ Q G+V A VI+ R+T RSRGFGFV+ T+++A A++ +L+ Sbjct: 106 YDIDSEGLAQLFQ-QAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLN 164 Query: 459 GRPLRLSLAAQNPPAGSTPSTA 394 GR L ++ AA P GS P A Sbjct: 165 GRLLTVNKAA---PRGSRPERA 183
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 60.8 bits (146), Expect = 3e-09 Identities = 28/68 (41%), Positives = 44/68 (64%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 WG+ L+ F +V ARV+++R+TGRSRGFGFV+ + + A+ +DG LDG Sbjct: 239 WGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDG 298 Query: 456 RPLRLSLA 433 R +R+++A Sbjct: 299 RTIRVNVA 306 Score = 50.1 bits (118), Expect = 6e-06 Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 1/71 (1%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELD 460 + V ++ L FE Q G+V A VI+ RDT +SRGFGFV+ T+++A+ A++ + +++ Sbjct: 145 YDVDSEGLARLFE-QAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVN 203 Query: 459 GRPLRLSLAAQ 427 GR L ++ AA+ Sbjct: 204 GRLLTVNKAAR 214
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 60.5 bits (145), Expect = 4e-09 Identities = 29/63 (46%), Positives = 43/63 (68%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + L+ +FEG + AR++ +RDTG S+GFGFV F + +DAKAA +AM+ E+DG + L Sbjct: 567 ETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTL 623 Query: 441 SLA 433 A Sbjct: 624 DFA 626 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQ-SQ 385 + + GR +G+ FV F T +DAK AL + + E++GR +RL ++ + G+ + +Q Sbjct: 491 QNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQ 550 Query: 384 QEKT 373 Q KT Sbjct: 551 QSKT 554 Score = 39.3 bits (90), Expect = 0.010 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D +K FE + R++ ++ G S+G ++ F T +A+ AL+ G E+DGR Sbjct: 382 VTEDEMKNVFENA---LEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRA 437 Query: 450 LRLSLAAQNPPAGSTPSTAQSQQEKTASRGS-EAEPQVDNNTS 325 + + + +SQQE G E++ + NN S Sbjct: 438 MVIDYTGE-----------KSQQESQKGGGERESKTLIVNNLS 469
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 60.1 bits (144), Expect = 5e-09 Identities = 31/70 (44%), Positives = 45/70 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK +FEG V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 582 ETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 638 Query: 441 SLAAQNPPAG 412 A G Sbjct: 639 DWAKPKGEGG 648 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA---------GSTPST 397 G+ +G+ F+ F + +DAK AL + + +E++GR +RL L N + G + T Sbjct: 520 GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRSQPSKTLFVKGLSEDT 579 Query: 396 AQSQQEKTASRGSEAEPQVDNNTSTSGQFG 307 + +++ A D T +S FG Sbjct: 580 TEETLKESFEGSVRARIVTDRETGSSKGFG 609 Score = 37.0 bits (84), Expect = 0.049 Identities = 26/106 (24%), Positives = 45/106 (42%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + + D LK FE + G+S+G ++ F + DA+ L+ G E+DG Sbjct: 403 FNITEDELKEVFED-----AMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 457 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTS 319 R + L + Q + KT++ E++ V +N S S Sbjct: 458 RSVSLYYTGEK-------GQRQERTGKTSTWSGESKTLVLSNLSYS 496
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 60.1 bits (144), Expect = 5e-09 Identities = 31/70 (44%), Positives = 45/70 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK +FEG V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 585 ETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 641 Query: 441 SLAAQNPPAG 412 A G Sbjct: 642 DWAKPKGEGG 651 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/63 (38%), Positives = 38/63 (60%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 382 + G+S+G+ F+ F + +DAK AL + + +E++GR +RL L P GS A+SQ Sbjct: 515 QNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG---PRGS--PNARSQP 569 Query: 381 EKT 373 KT Sbjct: 570 SKT 572 Score = 35.0 bits (79), Expect = 0.19 Identities = 25/106 (23%), Positives = 44/106 (41%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + + D LK FE + G+S+G ++ F + DA+ L+ G E+DG Sbjct: 402 FNITEDELKEVFED-----ALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 456 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTS 319 R + L + Q + K ++ E++ V +N S S Sbjct: 457 RSVSLYYTGEK-------GQRQERTGKNSTWSGESKTLVLSNLSYS 495
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 60.1 bits (144), Expect = 5e-09 Identities = 31/70 (44%), Positives = 45/70 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK +FEG V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 588 ETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 644 Query: 441 SLAAQNPPAG 412 A G Sbjct: 645 DWAKPKGEGG 654 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/59 (40%), Positives = 37/59 (62%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 373 G+S+G+ F+ F + +DAK AL + + +E++GR +RL L P GS A+SQ KT Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG---PRGS--PNARSQPSKT 575 Score = 37.0 bits (84), Expect = 0.049 Identities = 28/106 (26%), Positives = 48/106 (45%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + + D LK FE V R++ + GRS+G ++ F + DA+ L+ G E+DG Sbjct: 405 FNITEDELKEVFEDA---VEIRLVSQ--DGRSKGIAYIEFKSEADAEKNLEEKQGAEIDG 459 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTS 319 R + L + Q + K ++ E++ V +N S S Sbjct: 460 RSVSLYYTGEK-------GQRQERTGKNSTWSGESKTLVLSNLSYS 498
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 59.7 bits (143), Expect = 7e-09 Identities = 29/75 (38%), Positives = 46/75 (61%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W AL+TAF ++ +++I +R+TGRSRGFGFV+F + K A++ M+G +LDG Sbjct: 17 WATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDG 76 Query: 456 RPLRLSLAAQNPPAG 412 R + ++ A G Sbjct: 77 RSITVNEAQSRGSGG 91
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 59.7 bits (143), Expect = 7e-09 Identities = 29/68 (42%), Positives = 45/68 (66%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W +L+TAF LV +++I +R+TGRSRGFGFV+F + K A++ M+G +LDG Sbjct: 17 WATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDG 76 Query: 456 RPLRLSLA 433 R + ++ A Sbjct: 77 RSITVNEA 84
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 59.7 bits (143), Expect = 7e-09 Identities = 29/75 (38%), Positives = 46/75 (61%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W AL+TAF ++ +++I +R+TGRSRGFGFV+F + K A++ M+G +LDG Sbjct: 17 WATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDG 76 Query: 456 RPLRLSLAAQNPPAG 412 R + ++ A G Sbjct: 77 RSITVNEAQSRGSGG 91
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 59.3 bits (142), Expect = 9e-09 Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W V L FE +VGARVI + +GRS+G+G+V F T + AKAA+ A E+DG Sbjct: 272 WNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDG 331 Query: 456 RPLRLSLAAQNP-PAGSTPSTAQ---------SQQEKTASRGSEAEPQVDNNTSTSGQFG 307 R + L L+ NP PA P Q S+ T G+ + +++ ST+ FG Sbjct: 332 RMVNLDLS--NPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTA--FG 387 Query: 306 G 304 G Sbjct: 388 G 388 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/71 (36%), Positives = 38/71 (53%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D L TAF G + R+ + +GR +GFG+V+F I AK ++ M+G + GRP RL Sbjct: 380 DDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRL 438 Query: 441 SLAAQNPPAGS 409 + GS Sbjct: 439 DFSTPRTGGGS 449
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 58.9 bits (141), Expect = 1e-08 Identities = 29/75 (38%), Positives = 45/75 (60%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W + L+ AF ++ ++VI +R+TGRSRGFGFV+F + Q A++ M+G ELDG Sbjct: 17 WATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDG 76 Query: 456 RPLRLSLAAQNPPAG 412 R + ++ A G Sbjct: 77 RNITVNQAQSRGGGG 91
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 58.9 bits (141), Expect = 1e-08 Identities = 30/70 (42%), Positives = 45/70 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK +F+G V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 585 ETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 641 Query: 441 SLAAQNPPAG 412 A G Sbjct: 642 DWAKPKGEGG 651 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/63 (38%), Positives = 37/63 (58%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 382 + G+S+G+ F+ F + +DAK AL + + E++GR +RL L P GS A+SQ Sbjct: 515 QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG---PRGS--PNARSQP 569 Query: 381 EKT 373 KT Sbjct: 570 SKT 572 Score = 37.0 bits (84), Expect = 0.049 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D LK FE A + G+S+G ++ F T DA+ + G E+DGR Sbjct: 403 VTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRS 457 Query: 450 LRL 442 + L Sbjct: 458 ISL 460
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 58.9 bits (141), Expect = 1e-08 Identities = 30/70 (42%), Positives = 45/70 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK +F+G V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 586 ETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 642 Query: 441 SLAAQNPPAG 412 A G Sbjct: 643 DWAKPKGEGG 652 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/63 (38%), Positives = 37/63 (58%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 382 + G+S+G+ F+ F + +DAK AL + + E++GR +RL L P GS A+SQ Sbjct: 516 QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG---PRGS--PNARSQP 570 Query: 381 EKT 373 KT Sbjct: 571 SKT 573 Score = 37.0 bits (84), Expect = 0.049 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D LK FE A + G+S+G ++ F T DA+ + G E+DGR Sbjct: 404 VTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRS 458 Query: 450 LRL 442 + L Sbjct: 459 ISL 461
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 58.9 bits (141), Expect = 1e-08 Identities = 30/70 (42%), Positives = 45/70 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK +F+G V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 587 ETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 643 Query: 441 SLAAQNPPAG 412 A G Sbjct: 644 DWAKPKGEGG 653 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/63 (38%), Positives = 37/63 (58%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 382 + G+S+G+ F+ F + +DAK AL + + E++GR +RL L P GS A+SQ Sbjct: 517 QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG---PRGS--PNARSQP 571 Query: 381 EKT 373 KT Sbjct: 572 SKT 574 Score = 37.0 bits (84), Expect = 0.049 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D LK FE A + G+S+G ++ F T DA+ + G E+DGR Sbjct: 405 VTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRS 459 Query: 450 LRL 442 + L Sbjct: 460 ISL 462
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 58.5 bits (140), Expect = 2e-08 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G +LK AF G+ ARV+ + TGRSRG+GFV+F + A +A+ AM+G EL+G Sbjct: 41 GTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGF 100 Query: 453 PLRLSLAAQNP----PAGSTPSTAQSQQEKTASRGSEAEPQVD 337 + +++A P + A+ ++ K SR +P VD Sbjct: 101 NISVNVAKDWPSLPLSLDESIEEAEKKENKMMSRSVWKDPFVD 143
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 57.8 bits (138), Expect = 3e-08 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 3/108 (2%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + +K AF + ARV+ + TG+S+G+GFVSF DA+ A+Q M G L GR Sbjct: 117 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176 Query: 450 LRLSLAAQNPPAGST---PSTAQSQQEKTASRGSEAEPQVDNNTSTSG 316 +R + A + PPA + +T Q ++ S+ S V TSG Sbjct: 177 IRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSG 224 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/63 (34%), Positives = 37/63 (58%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 DT + + FV FH + A AAL AM+G ++ G+ ++++ A +TPS SQ++ Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWA-------TTPS---SQKKD 90 Query: 375 TAS 367 T+S Sbjct: 91 TSS 93
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 57.8 bits (138), Expect = 3e-08 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + +K AF + ARV+ + TG+S+G+GFVSF DA+ A+Q M G L GR Sbjct: 117 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176 Query: 450 LRLSLAAQNPPAGST---PSTAQSQQEKTASRGSEAEPQVDNNTSTSG 316 +R + A + PPA + +T Q ++ ++ S + V TSG Sbjct: 177 IRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSG 224 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/63 (34%), Positives = 37/63 (58%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 DT + + FV FH + A AAL AM+G ++ G+ ++++ A +TPS SQ++ Sbjct: 41 DTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWA-------TTPS---SQKKD 90 Query: 375 TAS 367 T+S Sbjct: 91 TSS 93
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 57.8 bits (138), Expect = 3e-08 Identities = 28/75 (37%), Positives = 45/75 (60%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W ++L+ AF ++ ++VI +R+TGRSRGFGFV+F + A++ M+G ELDG Sbjct: 17 WATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDG 76 Query: 456 RPLRLSLAAQNPPAG 412 R + ++ A G Sbjct: 77 RNITVNQAQSRGGGG 91
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 57.8 bits (138), Expect = 3e-08 Identities = 27/75 (36%), Positives = 45/75 (60%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W ++L+ AF + +++I +R+TGRSRGFGFV+F + + A++ M+G ELDG Sbjct: 15 WATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDG 74 Query: 456 RPLRLSLAAQNPPAG 412 R + ++ A G Sbjct: 75 RNITVNEAQSRGSGG 89
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 57.4 bits (137), Expect = 4e-08 Identities = 28/66 (42%), Positives = 42/66 (63%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D L+ AF + V+ +R+T RSRGFGFV+F + DAK A+ AM+G +DGR +R+ Sbjct: 19 DCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRV 78 Query: 441 SLAAQN 424 A ++ Sbjct: 79 DQAGKS 84
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/71 (39%), Positives = 41/71 (57%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F L G V++++ TGRSRGF FV F I D+K A++ +G+ELDGR +R+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192 Query: 435 AAQNPPAGSTP 403 + TP Sbjct: 193 SITKRAHTPTP 203
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/71 (39%), Positives = 41/71 (57%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F L G V++++ TGRSRGF FV F I D+K A++ +G+ELDGR +R+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194 Query: 435 AAQNPPAGSTP 403 + TP Sbjct: 195 SITKRAHTPTP 205
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 56.6 bits (135), Expect = 6e-08 Identities = 30/96 (31%), Positives = 54/96 (56%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + +K+AF + ARV+ + TG+S+G+GFVSF+ DA+ A+ M G L GR Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184 Query: 450 LRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQ 343 +R + A + PPA + ++Q + +++ P+ Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK 220
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 55.8 bits (133), Expect = 1e-07 Identities = 30/96 (31%), Positives = 54/96 (56%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + +K+AF + ARV+ + TG+S+G+GFVSF+ DA+ A+ M G L GR Sbjct: 108 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 167 Query: 450 LRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQ 343 +R + A + PPA + ++Q + +++ P+ Sbjct: 168 IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK 203
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/65 (43%), Positives = 41/65 (63%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 AL+ F + V+ +R+T RSRGFGFV+F I DAK A+ AM+G +DGR +R+ Sbjct: 21 ALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80 Query: 438 LAAQN 424 A ++ Sbjct: 81 QAGKS 85
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/65 (43%), Positives = 41/65 (63%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 AL+ F + V+ +R+T RSRGFGFV+F I DAK A+ AM+G +DGR +R+ Sbjct: 21 ALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80 Query: 438 LAAQN 424 A ++ Sbjct: 81 QAGKS 85
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/65 (43%), Positives = 41/65 (63%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 AL+ F + V+ +R+T RSRGFGFV+F I DAK A+ AM+G +DGR +R+ Sbjct: 21 ALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80 Query: 438 LAAQN 424 A ++ Sbjct: 81 QAGKS 85
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/87 (37%), Positives = 43/87 (49%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D L+ FE + + +R T SRGF FV FH +DA+ A+ AMDG LDGR LR+ Sbjct: 28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 87 Query: 441 SLAAQNPPAGSTPSTAQSQQEKTASRG 361 +A P S S + S G Sbjct: 88 QMARYGRPPDSHHSRRGPPPRRYGSSG 114
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 55.1 bits (131), Expect = 2e-07 Identities = 25/49 (51%), Positives = 36/49 (73%) Frame = -2 Query: 570 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 424 V+ +R+T RSRGFGFV+F I DAK A+ AM+G +DGR +R+ A ++ Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.1 bits (131), Expect = 2e-07 Identities = 25/49 (51%), Positives = 36/49 (73%) Frame = -2 Query: 570 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 424 V+ +R+T RSRGFGFV+F I DAK A+ AM+G +DGR +R+ A ++ Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 55.1 bits (131), Expect = 2e-07 Identities = 26/85 (30%), Positives = 48/85 (56%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + + D L+ FE + +++ + +TGRS+G+GF++F + AK AL+ ++G EL G Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQ 382 RP+++ + A S S S + Sbjct: 319 RPMKVGHVTERTDASSASSFLDSDE 343
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 55.1 bits (131), Expect = 2e-07 Identities = 26/85 (30%), Positives = 48/85 (56%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + + D L+ FE + +++ + +TGRS+G+GF++F + AK AL+ ++G EL G Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQ 382 RP+++ + A S S S + Sbjct: 319 RPMKVGHVTERTDASSASSFLDSDE 343
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/71 (42%), Positives = 39/71 (54%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D L+ FE + + +R T SRGF FV FH +DA+ A+ AMDG LDGR LR+ Sbjct: 27 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86 Query: 441 SLAAQNPPAGS 409 +A P S Sbjct: 87 QMARYGRPPDS 97
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/71 (42%), Positives = 39/71 (54%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D L+ FE + + +R T SRGF FV FH +DA+ A+ AMDG LDGR LR+ Sbjct: 27 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86 Query: 441 SLAAQNPPAGS 409 +A P S Sbjct: 87 QMARYGRPPDS 97
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/71 (42%), Positives = 39/71 (54%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D L+ FE + + +R T SRGF FV FH +DA+ A+ AMDG LDGR LR+ Sbjct: 27 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86 Query: 441 SLAAQNPPAGS 409 +A P S Sbjct: 87 QMARYGRPPDS 97
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/71 (42%), Positives = 39/71 (54%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D L+ FE + + +R T SRGF FV FH +DA+ A+ AMDG LDGR LR+ Sbjct: 27 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86 Query: 441 SLAAQNPPAGS 409 +A P S Sbjct: 87 QMARYGRPPDS 97
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/63 (39%), Positives = 45/63 (71%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 ++L +AF ++ +++I +R+T RSRGFGFV+F T + ++A++ M+G ELDGR + + Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60 Query: 441 SLA 433 + A Sbjct: 61 NEA 63
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 53.5 bits (127), Expect = 5e-07 Identities = 27/75 (36%), Positives = 42/75 (56%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W L+ F ++ +++I +R+TGRSRGFGFV+F + K A+ M+G ELDG Sbjct: 15 WATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDG 74 Query: 456 RPLRLSLAAQNPPAG 412 R + ++ A G Sbjct: 75 RTITVNEAQSRGGGG 89
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 53.5 bits (127), Expect = 5e-07 Identities = 26/84 (30%), Positives = 43/84 (51%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 + P TP + +SR Sbjct: 194 SITKRPHTPTPGIYMGRPTYGSSR 217
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 53.5 bits (127), Expect = 5e-07 Identities = 26/84 (30%), Positives = 43/84 (51%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 + P TP + +SR Sbjct: 194 SITKRPHTPTPGIYMGRPTYGSSR 217
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 53.5 bits (127), Expect = 5e-07 Identities = 26/84 (30%), Positives = 43/84 (51%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 + P TP + +SR Sbjct: 194 SITKRPHTPTPGIYMGRPTYGSSR 217
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 53.5 bits (127), Expect = 5e-07 Identities = 25/82 (30%), Positives = 50/82 (60%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D L+T E + A V++++ +GRSR FGFV+ T++DA A ++ ++ E+ GR +++ Sbjct: 98 DELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKV 157 Query: 441 SLAAQNPPAGSTPSTAQSQQEK 376 ++ + P G +T Q++ + Sbjct: 158 NI-TEKPLEGMDIATTQAEDSQ 178 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/66 (36%), Positives = 42/66 (63%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V + LK F + ++GA+V T +S GFGFVSF + ++ +AA+QA++ L+G+ Sbjct: 195 VTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQK 254 Query: 450 LRLSLA 433 +R++ A Sbjct: 255 IRVNKA 260
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 53.1 bits (126), Expect = 7e-07 Identities = 25/75 (33%), Positives = 44/75 (58%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W + L+ F ++ +++I +R++GRSRGFGFV+F + + A++ M+G ELDG Sbjct: 15 WATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDG 74 Query: 456 RPLRLSLAAQNPPAG 412 R + ++ A G Sbjct: 75 RVITVNEAQSRGSGG 89
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/86 (30%), Positives = 47/86 (54%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + + D L+ FE + ++ + DTGRS+G+GF++F + A+ AL+ ++G EL G Sbjct: 272 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 331 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQE 379 RP+R+ + G+ + QE Sbjct: 332 RPMRVGHVTERLDGGTDITFPDGDQE 357
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 49.3 bits (116), Expect = 1e-05 Identities = 22/49 (44%), Positives = 35/49 (71%) Frame = -2 Query: 570 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 424 V+ +R+T RSRGFGF++F + A A++AM+G LDGR +R+ A ++ Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKS 85
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 48.5 bits (114), Expect = 2e-05 Identities = 22/49 (44%), Positives = 35/49 (71%) Frame = -2 Query: 570 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 424 V+ +R+T RSRGFGF++F + A A++AM+G LDGR +R+ A ++ Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKS 85
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/89 (30%), Positives = 45/89 (50%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 ++ D L+ F + R++ E T SRGFGF+SF T+++A +A+ ++ E GR Sbjct: 112 MQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRV 171 Query: 450 LRLSLAAQNPPAGSTPSTAQSQQEKTASR 364 L + A ++ P TP + SR Sbjct: 172 LNVQKAKRSRPHSPTPGKYMGYDRRRNSR 200
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 47.0 bits (110), Expect = 5e-05 Identities = 21/64 (32%), Positives = 39/64 (60%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK F +V R++++R+TG+ +G+GF + + A +A++ ++G E GR LR+ Sbjct: 30 EQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89 Query: 441 SLAA 430 AA Sbjct: 90 DNAA 93
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 47.0 bits (110), Expect = 5e-05 Identities = 21/64 (32%), Positives = 39/64 (60%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK F +V R++++R+TG+ +G+GF + + A +A++ ++G E GR LR+ Sbjct: 30 EQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89 Query: 441 SLAA 430 AA Sbjct: 90 DNAA 93
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 47.0 bits (110), Expect = 5e-05 Identities = 25/85 (29%), Positives = 40/85 (47%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 394 +++ + T RSRGF F+ F + DA+ A A G+E+DGR +R+ + TP Sbjct: 135 QMVIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDYSITQRAHTPTPGVY 194 Query: 393 QSQQEKTASRGSEAEPQVDNNTSTS 319 + + R S +TS S Sbjct: 195 MGRPSRPLGRRSRERDYSTRDTSRS 219
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/62 (38%), Positives = 35/62 (56%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 D G RG F +FH+ ++AK +Q ++G E+ GR LR+ Q PPA + +QEK Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPA-ERERVERGKQEK 326 Query: 375 TA 370 A Sbjct: 327 RA 328
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 46.6 bits (109), Expect = 6e-05 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Frame = -2 Query: 591 PGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 412 P A++I + TG SR +GFV F + ++ + AL M G GRPLR+S+A+ P Sbjct: 207 PSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVAS---PKS 263 Query: 411 STPSTAQSQQEKTASRGSEAEPQVD-------NNTSTSGQFGGEMEKSNLQ 280 A S + S +P D N T G + + +LQ Sbjct: 264 RASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQ 314
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 46.2 bits (108), Expect = 8e-05 Identities = 21/64 (32%), Positives = 39/64 (60%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK F +V R++++R+TG+ +G+GF + + A +A++ ++G E GR LR+ Sbjct: 30 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89 Query: 441 SLAA 430 AA Sbjct: 90 DNAA 93
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 46.2 bits (108), Expect = 8e-05 Identities = 21/64 (32%), Positives = 39/64 (60%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK F +V R++++R+TG+ +G+GF + + A +A++ ++G E GR LR+ Sbjct: 30 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89 Query: 441 SLAA 430 AA Sbjct: 90 DNAA 93
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 46.2 bits (108), Expect = 8e-05 Identities = 21/64 (32%), Positives = 39/64 (60%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK F +V R++++R+TG+ +G+GF + + A +A++ ++G E GR LR+ Sbjct: 30 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89 Query: 441 SLAA 430 AA Sbjct: 90 DNAA 93
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/64 (35%), Positives = 39/64 (60%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 AL+ F +V ++ +R+T +SRGF FV+F + DAK A + M+G LDG+ +++ Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82 Query: 438 LAAQ 427 A + Sbjct: 83 QATK 86
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 46.2 bits (108), Expect = 8e-05 Identities = 21/66 (31%), Positives = 36/66 (54%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 394 +++ + T RSRGF F+ F + DA+AA + G+E+DGR +R+ + TP Sbjct: 127 QMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVY 186 Query: 393 QSQQEK 376 +Q + Sbjct: 187 LGRQPR 192
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 46.2 bits (108), Expect = 8e-05 Identities = 21/64 (32%), Positives = 39/64 (60%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK F +V R++++R+TG+ +G+GF + + A +A++ ++G E GR LR+ Sbjct: 30 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89 Query: 441 SLAA 430 AA Sbjct: 90 DNAA 93
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 45.8 bits (107), Expect = 1e-04 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Frame = -2 Query: 588 GLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAG 412 G+ R++ + T RSRGFG+V F T AAL A+ G +L GRP+R+++A + A Sbjct: 117 GVTSIRLVIDPLTERSRGFGYVEFETADTLSAAL-ALSGEDLMGRPVRITVAEPRRSFAR 175 Query: 411 STPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQF 310 ST + AE + SG+F Sbjct: 176 EERSTGDWVRRGPLPPAEPAESPFGKRRTNSGRF 209
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/67 (35%), Positives = 40/67 (59%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ FE + + ++ + +S+GFGFV F+ +DA+ AL DG +DGR LR++L Sbjct: 35 LRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTL 94 Query: 435 AAQNPPA 415 A + P+ Sbjct: 95 AKYDRPS 101
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/61 (40%), Positives = 34/61 (55%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 364 S GFGFV F T + A A + AMDG +DG ++L L+ + AG SQ++K A Sbjct: 685 SMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAG-------SQEKKKAKN 737 Query: 363 G 361 G Sbjct: 738 G 738 Score = 31.2 bits (69), Expect = 2.7 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS- 367 +RGF FV F ++A+ A+ + GV L GR L + PA + A+ + E+ Sbjct: 777 ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQ------PAEQEAANAEEELERMTKK 830 Query: 366 -RGSEAEPQVDNNTSTSGQFGGEME 295 R A ++ T +G+ +ME Sbjct: 831 VRKQAAVSEIAAMTRNAGKRKLDME 855
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 5/82 (6%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERD---TGR--SRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F+ PG V A V + D +G+ S GFGFV F T + A A+ +DG LDG Sbjct: 632 ALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGH 691 Query: 453 PLRLSLAAQNPPAGSTPSTAQS 388 L+L L+ + S S +S Sbjct: 692 KLQLKLSHKQGTGTSASSIKKS 713 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/41 (41%), Positives = 28/41 (68%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 421 +RGF FV F+ +++A+ A+ ++GV L GR L + A Q+P Sbjct: 756 ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDP 796 Score = 30.4 bits (67), Expect = 4.6 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = -2 Query: 612 KTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 ++ F L + + TG+S+GF +V F +DA A +++D GR L + Sbjct: 327 RSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHI 383
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 L+T PG ARV + D R S G+GFV F T + A AL+A++G E+DG+ Sbjct: 551 LQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDGKS 610 Query: 450 LRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAE 349 L + A + ++ ++ +G +AE Sbjct: 611 LEVKFAQRG-----------AEDDRETKKGGDAE 633 Score = 32.7 bits (73), Expect = 0.93 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR-----PLRLSLAAQNPPAGSTPSTAQS 388 TG G F+ FH +DA AA +A+D GR P R + AGS + Sbjct: 258 TGEPLGTAFLQFHNAEDALAAYKALDKTIFQGRLLHVLPGRAKPGQEGAAAGSGVVDGKV 317 Query: 387 QQEKTASRGSEAEPQVD 337 ++ RG E + +VD Sbjct: 318 LGKRDEGRG-EVKSKVD 333
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/92 (23%), Positives = 49/92 (53%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 406 ++ +++F+ TGRS+G+ F+ F ++ + +A++ ++G +L R L+ ++ + +G Sbjct: 44 VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDISG-- 101 Query: 405 PSTAQSQQEKTASRGSEAEPQVDNNTSTSGQF 310 + Q QQ+ G+ +NN S F Sbjct: 102 -VSQQQQQQYNNINGNNNNNGNNNNNSNGPDF 132
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 44.7 bits (104), Expect = 2e-04 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V ++L AF P LV +V+ +R+ G++RGFGFVSF A + +G + RP Sbjct: 41 VNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRP 99 Query: 450 LRLSLAAQN-PPAGSTPSTAQSQ-----QEKTASRGSEAEPQVDN 334 ++LS A + P T S+ +T G+ + ++ N Sbjct: 100 VKLSRATSDVKPNEVNEKTIDSKIRNSLYSRTIHHGNRVQKKIKN 144
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 44.3 bits (103), Expect = 3e-04 Identities = 20/43 (46%), Positives = 29/43 (67%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +R+TGR RGFGFV + AA++A+DG E GR L+++ A Sbjct: 35 DRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVNKA 77
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/56 (37%), Positives = 36/56 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 D LK AF G+ G + + V+ + G+S+GFGFV+F DA A+++++G + D + Sbjct: 229 DDLKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Frame = -2 Query: 597 GQPG-LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 421 GQ G +V RV + T RS G+G+V+F QDA A+Q ++ + L G+P+R+ + ++P Sbjct: 57 GQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDP 116 Score = 35.8 bits (81), Expect = 0.11 Identities = 16/52 (30%), Positives = 30/52 (57%) Frame = -2 Query: 588 GLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 G V + + G S+G GFV+F T ++A A+ + G ++ +PL +++A Sbjct: 342 GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/55 (27%), Positives = 32/55 (58%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F +V +V + +G+S+G+GFV + + A+ A++ ++G+ L+ + Sbjct: 139 ALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDK 192
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/64 (34%), Positives = 38/64 (59%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 AL+ F +V ++ +R+T +SRGF FV+F + DAK + M+G LDG+ +++ Sbjct: 23 ALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVE 82 Query: 438 LAAQ 427 A + Sbjct: 83 QATK 86
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 43.5 bits (101), Expect = 5e-04 Identities = 21/50 (42%), Positives = 32/50 (64%) Frame = -2 Query: 597 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 GQ G + + D G+SRGFGFVSF +DA+ A+ M+G +L+G+ + Sbjct: 212 GQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/67 (34%), Positives = 39/67 (58%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F ++ +V+ D S+G+GFV F T + A+ A+ M+G+ L+ R Sbjct: 114 ALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/61 (36%), Positives = 38/61 (62%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F + +V+ + DTGRSRGFGFV++ ++A+ A+ M+G E++GR + + Sbjct: 207 LREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265 Query: 435 A 433 A Sbjct: 266 A 266 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/67 (34%), Positives = 38/67 (56%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ D L+ F + A+V+ E G S+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 34.7 bits (78), Expect = 0.24 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F ++ +V+ D SRG+GFV F T + A A+Q M+G+ L+ R Sbjct: 114 ALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D L+ AF + A+V+ + + GRS+GFGFV F+ +A A+ ++G + +PL + Sbjct: 301 DRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYV 359 Query: 441 SLA 433 +LA Sbjct: 360 ALA 362 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 1/64 (1%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVEL-DGRPLR 445 + LK FE + +V+ + D G+S+GFGFV+F T + A+AA+QA++G ++ +G+ L Sbjct: 197 EKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLY 255 Query: 444 LSLA 433 ++ A Sbjct: 256 VARA 259 Score = 31.6 bits (70), Expect = 2.1 Identities = 12/34 (35%), Positives = 23/34 (67%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 + G S+G+GFV F T + A ++ ++G+ L+G+ Sbjct: 125 EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGK 158
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 43.5 bits (101), Expect = 5e-04 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Frame = -2 Query: 627 RADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 RA LK F +VGA+V+ + +R +GFV+ T ++A + + EL G+ + Sbjct: 440 RATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMI 499 Query: 447 RLSLAAQNPPAGSTPS--TAQSQQEKTASRGSEA----EPQVDNNTSTSGQFGGEMEKS 289 + A P P S++EKT++ A E + D G EKS Sbjct: 500 SVEKAKSEPAGKRVPDRRDGDSKKEKTSTSDRSANLKREEKGDRKDDAKKTDDGSTEKS 558
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 43.5 bits (101), Expect = 5e-04 Identities = 21/64 (32%), Positives = 36/64 (56%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 D S GFGF+ F T + A A + AMDG +DG ++L ++ + S P T++ ++K Sbjct: 653 DKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQ---SSLPKTSKGSKKK 709 Query: 375 TASR 364 + + Sbjct: 710 ISGK 713 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 427 +RGF FV F +A+ A+ + GV L GR L + A Q Sbjct: 751 ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAEQ 789
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 43.1 bits (100), Expect = 7e-04 Identities = 26/94 (27%), Positives = 48/94 (51%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 D RS+GFG++ + A+ AL+ M+G +L GR +R+ L + T S+ + ++ Sbjct: 375 DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCL-GNDKFTTETTSSMLKRFDE 433 Query: 375 TASRGSEAEPQVDNNTSTSGQFGGEMEKSNLQAT 274 T +R ++P N S++ + E + L T Sbjct: 434 TLARQERSQPSQRNGGSSTYESQDYREAAPLSPT 467
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/64 (34%), Positives = 38/64 (59%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 AL+ F +V ++ +R+T +SRGF FV+ + DAK A + M+G LDG+ +++ Sbjct: 23 ALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVE 82 Query: 438 LAAQ 427 A + Sbjct: 83 QATK 86
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = -2 Query: 597 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 418 GQP + + +++TG+ +G VS+ AKAA++ DG + G L++SLA + PP Sbjct: 394 GQPMI---HIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 450 Query: 417 AGS 409 S Sbjct: 451 MNS 453
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 370 G+ +GF + + T + A+AA Q DG+ L G LR+S A PP S + + Q Sbjct: 259 GQLKGFAVLEYETAEMAEAAQQRADGLALGGSHLRVSFCAPGPPGRSMLAALIAAQATAL 318 Query: 369 SRGSEAEPQ 343 +RG P+ Sbjct: 319 NRGKGLLPE 327
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = -2 Query: 597 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 418 GQP + + +++TG+ +G VS+ AKAA++ DG + G L++SLA + PP Sbjct: 393 GQPMI---HIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 449 Query: 417 AGS 409 S Sbjct: 450 MNS 452
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 42.7 bits (99), Expect = 9e-04 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQQEK 376 S GFGFV F T + A A + AMDG +DG ++L L+ Q +G+T + + + K Sbjct: 708 SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGK 764 Score = 33.5 bits (75), Expect = 0.54 Identities = 24/84 (28%), Positives = 39/84 (46%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 364 +RGF FV F ++A+ A+ + GV L GR L + A ++ A +E+ A Sbjct: 802 ARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAEED---------AVDAEEEIARM 852 Query: 363 GSEAEPQVDNNTSTSGQFGGEMEK 292 + QV N + + GG +K Sbjct: 853 TKKVRKQVATNEMAALRNGGGRKK 876 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = -2 Query: 591 PGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 412 P L+ I G SR FGF+ + +DA A++ +G ++ + +S+A + Sbjct: 40 PDLITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMA----KSF 95 Query: 411 STPSTAQSQQEK 376 + P Q +EK Sbjct: 96 ADPRVPQPMKEK 107
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 42.7 bits (99), Expect = 9e-04 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L AF + ++ + +T + RGF FV F +DA AA+ M+ EL GR +R++L Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81 Query: 435 A-------AQNPPAGSTPSTAQSQQEKTASRGSEAE-PQVDNNTSTSGQFGGEMEKSNLQ 280 A + P S + KT E E P+ + G+ + +SN Q Sbjct: 82 AKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGPEPPKAEAQEGEPTAKKARSNPQ 141
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/88 (27%), Positives = 40/88 (45%) Frame = -2 Query: 576 ARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPST 397 A+++ ++ TG S+G+GFV F + + AL M GV L+GR +++ P Sbjct: 193 AKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG------PTSGQQQH 246 Query: 396 AQSQQEKTASRGSEAEPQVDNNTSTSGQ 313 + S S VD+ + GQ Sbjct: 247 VSGNNDYNRSSSSLNNENVDSRFLSKGQ 274
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 42.4 bits (98), Expect = 0.001 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 10/95 (10%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 LK F G+ G + ++ + T +SRGF F++F DAK A + M+G L G+ +++ Sbjct: 24 LKAVF-GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 Query: 435 A---------AQNPPAGS-TPSTAQSQQEKTASRG 361 A + PPA S S + S + SRG Sbjct: 83 AKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRG 117
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/83 (34%), Positives = 41/83 (49%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D LKT F Q G V I + G+ RGFGFV F + +A AL+ M+ E+ GR + + Sbjct: 127 DDLKTVF-AQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAV 185 Query: 441 SLAAQNPPAGSTPSTAQSQQEKT 373 A T S + +EK+ Sbjct: 186 DWAVAKDKYKDTQSVSAIGEEKS 208 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Frame = -2 Query: 627 RADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ---AMDGVELDG 457 R++ L+ F + V+ E+ + RGFG+V+F ++D + AL+ +G +++ Sbjct: 15 RSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINV 74 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAE 349 + L + G ++ ++E A + A+ Sbjct: 75 TVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVAD 110
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/68 (33%), Positives = 37/68 (54%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L F LV A + + GRS+G+GFVS+ + + A AA++AM+ L +P+ +S Sbjct: 115 LYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSY 174 Query: 435 AAQNPPAG 412 A + G Sbjct: 175 AFKREGKG 182 Score = 35.4 bits (80), Expect = 0.14 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 424 +V + +R GFGF F QD + A Q ++ V+L G+P+R++ A+Q+ Sbjct: 37 VVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQD 90
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/60 (31%), Positives = 36/60 (60%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 394 +++ + DTG S+G+ F++F + + AA++AM+G L RP+ +S A + G +A Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSA 190 Score = 40.0 bits (92), Expect = 0.006 Identities = 17/44 (38%), Positives = 33/44 (75%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 430 +R TG+ +G+GFV F + +DA A++ M+ ++L G+P+R++ A+ Sbjct: 47 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/56 (39%), Positives = 34/56 (60%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 S GFGF F T + A A + AM+G LDG L+L L+ + G++ + A S+++K Sbjct: 696 SMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQ---GTSTTNASSKKKK 748 Score = 33.1 bits (74), Expect = 0.71 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 421 +RGF FV F ++A+ A+ + GV L GR L + Q+P Sbjct: 791 ARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDP 831
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 42.0 bits (97), Expect = 0.002 Identities = 25/91 (27%), Positives = 41/91 (45%) Frame = -2 Query: 627 RADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 RA LK F +VGA+V+ + +R +GFV+ T ++A + + EL G+ + Sbjct: 418 RATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMI 477 Query: 447 RLSLAAQNPPAGSTPSTAQSQQEKTASRGSE 355 + A P T S +K S S+ Sbjct: 478 SVEKAKNEPVGKKTSDKRDSDGKKEKSSNSD 508
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/61 (34%), Positives = 38/61 (62%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F + +V+ + D+GRSRGFGFV++ ++A+ A+ M+G E++GR + + Sbjct: 207 LREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265 Query: 435 A 433 A Sbjct: 266 A 266 Score = 38.5 bits (88), Expect = 0.017 Identities = 23/67 (34%), Positives = 38/67 (56%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ D L+ F + A+V+ E G S+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 34.7 bits (78), Expect = 0.24 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F ++ +V+ D SRG+GFV F T + A A+Q M+G+ L+ R Sbjct: 114 ALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/41 (43%), Positives = 30/41 (73%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 ++G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/67 (35%), Positives = 40/67 (59%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ + L+ AF + A+V+ E GRS+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 34.3 bits (77), Expect = 0.32 Identities = 15/34 (44%), Positives = 24/34 (70%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 D S+G+GFV F T + A+ A++ M+G+ L+GR Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 42.0 bits (97), Expect = 0.002 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Frame = -2 Query: 624 ADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKAALQAMDGVELD 460 + L AF+ G V A+V + D + S GFGFV+F T A+AAL+ MDG LD Sbjct: 612 SQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLD 671 Query: 459 GRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSE 355 + + + + A + + +K A++G++ Sbjct: 672 AHKISVKASHRGLDA-AEERRREDMAKKAANQGTK 705
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 42.0 bits (97), Expect = 0.002 Identities = 31/93 (33%), Positives = 45/93 (48%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 +GV ++ F L A V ++R +GRS G V F DA A++ GV LDG Sbjct: 84 FGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 142 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGS 358 RP+ + L A P+ + ++ T SRGS Sbjct: 143 RPMDIQLVASQIDPQRRPAQSGNRGGMTRSRGS 175
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/41 (43%), Positives = 30/41 (73%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 ++G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 39.3 bits (90), Expect = 0.010 Identities = 23/67 (34%), Positives = 39/67 (58%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 33.1 bits (74), Expect = 0.71 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F ++ +V+ D S+G+GFV F T + A+ A++ M+G+ L+ R Sbjct: 114 ALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/41 (43%), Positives = 30/41 (73%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 ++G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 39.3 bits (90), Expect = 0.010 Identities = 23/67 (34%), Positives = 39/67 (58%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 33.9 bits (76), Expect = 0.42 Identities = 24/90 (26%), Positives = 44/90 (48%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 AL F ++ +V+ D S+G+GFV F T + A+ A++ M+G+ L+ R + + Sbjct: 114 ALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV- 170 Query: 438 LAAQNPPAGSTPSTAQSQQEKTASRGSEAE 349 +SQ+E+ A G+ A+ Sbjct: 171 ------------GRFKSQKEREAELGARAK 188
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/41 (43%), Positives = 30/41 (73%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 ++G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 39.3 bits (90), Expect = 0.010 Identities = 23/67 (34%), Positives = 39/67 (58%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 33.1 bits (74), Expect = 0.71 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F ++ +V+ D S+G+GFV F T + A+ A++ M+G+ L+ R Sbjct: 114 ALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/41 (43%), Positives = 30/41 (73%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 ++G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 39.3 bits (90), Expect = 0.010 Identities = 23/67 (34%), Positives = 39/67 (58%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 33.1 bits (74), Expect = 0.71 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F ++ +V+ D S+G+GFV F T + A+ A++ M+G+ L+ R Sbjct: 114 ALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + L F G AR+ + D R S G+GFV F +I A+ A +AMDG LD Sbjct: 635 ERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTAQKAMDGKVLDA 694 Query: 456 RPLRLSLAAQNPPAGST 406 L ++ A +N A +T Sbjct: 695 HTLVVTFARRNAEASTT 711 Score = 38.1 bits (87), Expect = 0.022 Identities = 26/81 (32%), Positives = 42/81 (51%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 ++ F Q L R+ + D +RGFGFV + T+++A++A++A+ L GR L L Sbjct: 735 IRDLFSSQGQLKSVRLPKKFDN-TTRGFGFVEYSTVREAQSAMEALKHTHLLGRHLVLQW 793 Query: 435 AAQNPPAGSTPSTAQSQQEKT 373 + A ST Q+ KT Sbjct: 794 SHL---ASSTQQQVDMQRSKT 811 Score = 36.2 bits (82), Expect = 0.084 Identities = 26/85 (30%), Positives = 39/85 (45%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D + FE + + ++ T S+G FVSF A AA +A DG GR L L Sbjct: 328 DEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHL 387 Query: 441 SLAAQNPPAGSTPSTAQSQQEKTAS 367 PA + + A++ +KTA+ Sbjct: 388 L------PAVNKDALAETGSKKTAT 406
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/69 (31%), Positives = 34/69 (49%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 370 G+ +GF + + T + A+ A Q DG+ L G LR+S A PP S + + Q Sbjct: 259 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATAL 318 Query: 369 SRGSEAEPQ 343 +RG P+ Sbjct: 319 NRGKGLLPE 327
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/93 (31%), Positives = 46/93 (49%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 +GV ++ F L A V ++R +GRS G V F DA A++ +GV LDG Sbjct: 114 FGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDG 172 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGS 358 RP+ + L A P+ + ++ T +RG+ Sbjct: 173 RPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGA 205
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = -2 Query: 603 FEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 F+ G V AR+ + D R S GFGFV F T A+AAL AMDG +LD L Sbjct: 617 FKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAALAAMDGYKLDQHEL 673 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +RGFGF F + ++A+ A+ A+ L GR L L A Sbjct: 741 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFA 777
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 41.2 bits (95), Expect = 0.003 Identities = 21/58 (36%), Positives = 36/58 (62%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 + LK F G+ G + + D G+S+GFGFVSF +DA+ A+ M+G +++G+ + Sbjct: 205 ERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261 Score = 38.1 bits (87), Expect = 0.022 Identities = 23/67 (34%), Positives = 39/67 (58%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F ++ +V+ D S+G+GFV F T + A+ A+ M+G+ L+ R Sbjct: 114 ALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Frame = -2 Query: 570 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQ 391 V+ + RSRGFGFVSF D K AL + +G LR+ +A + + T + Sbjct: 56 VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVE 115 Query: 390 ----SQQEKTASRGSEAEPQVDNNTS 325 EK + +E E D S Sbjct: 116 KSTPESSEKITGQNNEDEDDADGEDS 141 Score = 33.5 bits (75), Expect = 0.54 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W R G+ G V I + G+ GF FV+ I + + AL+ +++DG Sbjct: 156 WSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDG 215 Query: 456 RPLRLSLAAQ 427 R + + A Q Sbjct: 216 RKVAVDFAVQ 225
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 40.8 bits (94), Expect = 0.003 Identities = 29/93 (31%), Positives = 45/93 (48%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 +GV ++ F L A V ++R +GRS G V F DA A++ +GV LDG Sbjct: 113 FGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDG 171 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGS 358 RP+ + L P+ + ++ T +RGS Sbjct: 172 RPMNIQLVTSQIDTQRRPAQSINRGGMTRNRGS 204
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/61 (36%), Positives = 34/61 (55%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L AF + ++ + +T + RGF FV F +DA AA+ M+ EL GR +R++L Sbjct: 22 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81 Query: 435 A 433 A Sbjct: 82 A 82
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/54 (37%), Positives = 35/54 (64%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 LK F + +V+ + ++GRSRGFGFV++ ++A+ A+ M+G E++GR Sbjct: 207 LKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGR 259 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/67 (32%), Positives = 37/67 (55%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ D L+ F + +V+ E G S+GFGFV F + ++A A+ M+G + + Sbjct: 304 GIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361 Query: 453 PLRLSLA 433 PL ++LA Sbjct: 362 PLYVALA 368 Score = 33.9 bits (76), Expect = 0.42 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F ++ +V+ D SRG+GFV F T + A A+Q M+G+ L+ R Sbjct: 114 ALYDTFSAFGDILSCKVVC--DEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 40.0 bits (92), Expect = 0.006 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Frame = -2 Query: 627 RADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 RA LK F +VGA+V+ + +R +GFV+ T +A + + EL GR + Sbjct: 419 RATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMI 478 Query: 447 RLSLAAQNPPAG---STPSTAQSQQEKTAS 367 + A+N PAG S + ++EK +S Sbjct: 479 SVE-KAKNEPAGKKLSDRKECEVKKEKLSS 507
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 40.0 bits (92), Expect = 0.006 Identities = 28/111 (25%), Positives = 47/111 (42%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 W + L++ F +V ++ ++ T +SRGFGFV F + + A LDG Sbjct: 19 WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDG 77 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGG 304 R + P TP Q ++ + + EP+ +N+ S GG Sbjct: 78 RNI--------DPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGG 120 Score = 31.2 bits (69), Expect = 2.7 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 6/93 (6%) Frame = -2 Query: 570 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQ 391 +I++ + R RGFGF++F Q A+ M ++ G+ + + A TP Sbjct: 145 MIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSQTPGPPG 203 Query: 390 SQQ------EKTASRGSEAEPQVDNNTSTSGQF 310 S Q + TA+ + PQ S G + Sbjct: 204 SNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMW 236
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 L AF+ G + A+V + D+ S GFGFV F + + A+ A +AMDG LDG Sbjct: 621 LTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHK 680 Query: 450 LRLSLA 433 L+L ++ Sbjct: 681 LQLKIS 686 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQQEKTAS 367 SRGF F + + ++A+ A+ A+ G L GR L L A A A Q+ K A+ Sbjct: 742 SRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQADASNAEEEIERMQATVSKQAA 801 Query: 366 RGSEAEPQVDNNTSTSGQFGGEMEK 292 + S A+ ++ GE E+ Sbjct: 802 QRSFADMKLAGEGKRRVDLEGEDEE 826 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 TG+ +GF V F ++A AA +A DG GR L + Sbjct: 338 TGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHI 374
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = -2 Query: 576 ARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 415 A+++ + T SRG+GFV F D K+AL M G RP+R+ LA A Sbjct: 216 AKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = -2 Query: 540 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 373 +G GFV F Q A+ A+ + G L +RLS P + QSQ +T Sbjct: 338 KGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVSQT 393
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 40.0 bits (92), Expect = 0.006 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 10/131 (7%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + ++ A+K + G V +F+ G+SRG G V F + K AL+ M+ +L G Sbjct: 100 YDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSG 159 Query: 456 RPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAE----------PQVDNNTSTSGQFG 307 RPL + + P G A Q+ T+ +GS A P + NN + + Sbjct: 160 RPLNI----KEDPDGENARRA-LQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVI 214 Query: 306 GEMEKSNLQAT 274 ++ L +T Sbjct: 215 SNLQAGRLGST 225 Score = 33.1 bits (74), Expect = 0.71 Identities = 13/40 (32%), Positives = 26/40 (65%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 + G+S+G G V F + + A+ A + M+G+++ GR + + L Sbjct: 548 ENGKSKGCGTVRFESAESAEKACRIMNGIKISGREIDVRL 587 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = -2 Query: 588 GLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 418 G V I E G+SRG G V+F +A A+ +G L RP+ + + ++ P Sbjct: 248 GTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVP 304
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 39.7 bits (91), Expect = 0.008 Identities = 21/63 (33%), Positives = 38/63 (60%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK F + A+++ + + G+S+GFGFV + T ++A A+ M+ L G+PL + Sbjct: 378 ERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436 Query: 441 SLA 433 +LA Sbjct: 437 ALA 439 Score = 38.5 bits (88), Expect = 0.017 Identities = 17/51 (33%), Positives = 31/51 (60%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 421 RV + T RS G+ +V+FH ++D + AL ++ + GRP R+ + ++P Sbjct: 110 RVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDP 160
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 39.7 bits (91), Expect = 0.008 Identities = 22/63 (34%), Positives = 37/63 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M+G + +PL + Sbjct: 308 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365 Query: 441 SLA 433 +LA Sbjct: 366 ALA 368 Score = 38.5 bits (88), Expect = 0.017 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 ++LK F Q G + + G+S+GFGFVS+ +DA A++ M+G E+ G+ Sbjct: 205 ESLKELFS-QFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/55 (30%), Positives = 29/55 (52%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 AL F ++ +V+ D S+G+ FV F T + A A++ M+G+ L+ R Sbjct: 114 ALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/53 (35%), Positives = 33/53 (62%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVEL 463 D L+ F G+ G++ + V+ +G SR FGFV+F + A +A++ M+G+ L Sbjct: 243 DELRKTF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294 Score = 38.1 bits (87), Expect = 0.022 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK F + ++V+ G SRGFGFV++ ++A AL M+G + +PL + Sbjct: 346 EKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404 Query: 441 SLA 433 +LA Sbjct: 405 ALA 407 Score = 35.0 bits (79), Expect = 0.19 Identities = 20/82 (24%), Positives = 38/82 (46%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 373 TGRS+G+GFV F + A+AA+ ++G+ ++ + + + + +T + Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231 Query: 372 ASRGSEAEPQVDNNTSTSGQFG 307 + E D T G+FG Sbjct: 232 YVKNLPKEIGEDELRKTFGKFG 253
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 39.7 bits (91), Expect = 0.008 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKAALQAMDG 472 + + + + F+ G + A + + D R S GFGFV F A AA+ AM+G Sbjct: 628 FSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMNG 687 Query: 471 VELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 LDG L + L+ Q A + S + K Sbjct: 688 FVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK 719 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D LK+ F L + ++ T +GF ++ FH DA A +D GR L + Sbjct: 337 DDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 430 +RGF F F T ++A A++A+ L GR L L A+ Sbjct: 760 ARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYAS 797
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/50 (36%), Positives = 33/50 (66%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 +V A+V ++ T S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/50 (36%), Positives = 33/50 (66%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 +V A+V ++ T S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 39.3 bits (90), Expect = 0.010 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 412 +GR F FV F +DA+ A++A DG E DGR +R+ P G Sbjct: 42 SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRG 88
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -2 Query: 597 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 427 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 318 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 371
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 39.3 bits (90), Expect = 0.010 Identities = 19/60 (31%), Positives = 35/60 (58%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 394 +++ + D+G S+GF F++F + + + AL+AM+G L R + +S A + G TA Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTA 190 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/44 (34%), Positives = 30/44 (68%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 430 +R T +GFGFV F +DA A++ ++ ++L G+P++++ A+ Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/53 (37%), Positives = 33/53 (62%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVEL 463 D LK F G+ G + + V+ + +G SR FGFV+F + + A A++ M+G+ L Sbjct: 239 DELKKTF-GKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 290 Score = 37.7 bits (86), Expect = 0.029 Identities = 21/66 (31%), Positives = 36/66 (54%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V + LK F + +V+ G SRGFGFV++ ++A A++ M+G + +P Sbjct: 339 VNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKP 397 Query: 450 LRLSLA 433 L ++LA Sbjct: 398 LYVALA 403 Score = 34.7 bits (78), Expect = 0.24 Identities = 14/44 (31%), Positives = 29/44 (65%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 421 T RS G+ +V+F +DA A+++++ + RP+R+ L+ ++P Sbjct: 81 THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDP 124 Score = 33.1 bits (74), Expect = 0.71 Identities = 20/81 (24%), Positives = 37/81 (45%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 370 GRS+G+GFV F + A+AA+ ++G+ L+ + + + + + S A Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 228 Query: 369 SRGSEAEPQVDNNTSTSGQFG 307 + E D T G++G Sbjct: 229 VKNLPKEITDDELKKTFGKYG 249
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 39.3 bits (90), Expect = 0.010 Identities = 17/63 (26%), Positives = 37/63 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D K+ F + +++ ++ TG+S G+GFV++ DA A+ ++G++L + +++ Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112 Query: 441 SLA 433 S A Sbjct: 113 SYA 115 Score = 34.7 bits (78), Expect = 0.24 Identities = 17/74 (22%), Positives = 41/74 (55%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 406 ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ N P+ T Sbjct: 151 IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210 Query: 405 PSTAQSQQEKTASR 364 + ++++R Sbjct: 211 GQALLTHLYQSSAR 224 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 + +VI + T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 39.3 bits (90), Expect = 0.010 Identities = 17/63 (26%), Positives = 37/63 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 D K+ F + +++ ++ TG+S G+GFV++ DA A+ ++G++L + +++ Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112 Query: 441 SLA 433 S A Sbjct: 113 SYA 115 Score = 33.9 bits (76), Expect = 0.42 Identities = 17/74 (22%), Positives = 41/74 (55%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 406 ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ N P+ T Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210 Query: 405 PSTAQSQQEKTASR 364 + ++++R Sbjct: 211 GQALLTHLYQSSAR 224 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 + +VI + T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -2 Query: 597 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 427 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 311 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 364
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -2 Query: 597 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 427 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 304 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 357
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/56 (37%), Positives = 36/56 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 ++L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A ++DGR Sbjct: 27 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH-KVDGR 81
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/63 (26%), Positives = 39/63 (61%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK+ F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++ Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 441 SLA 433 S A Sbjct: 113 SYA 115 Score = 38.1 bits (87), Expect = 0.022 Identities = 21/84 (25%), Positives = 44/84 (52%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 N P+ T SQ ++ +R Sbjct: 201 KFANNPSQKTNQAILSQLYQSPNR 224 Score = 33.5 bits (75), Expect = 0.54 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/63 (26%), Positives = 39/63 (61%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK+ F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++ Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 441 SLA 433 S A Sbjct: 113 SYA 115 Score = 38.1 bits (87), Expect = 0.022 Identities = 21/84 (25%), Positives = 44/84 (52%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 N P+ T SQ ++ +R Sbjct: 201 KFANNPSQKTNQAILSQLYQSPNR 224 Score = 33.5 bits (75), Expect = 0.54 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/63 (26%), Positives = 39/63 (61%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK+ F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++ Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 441 SLA 433 S A Sbjct: 113 SYA 115 Score = 38.1 bits (87), Expect = 0.022 Identities = 21/84 (25%), Positives = 44/84 (52%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 N P+ T SQ ++ +R Sbjct: 201 KFANNPSQKTNQAILSQLYQSPNR 224 Score = 33.5 bits (75), Expect = 0.54 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 38.9 bits (89), Expect = 0.013 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Frame = -2 Query: 531 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSL---AAQNPPAGSTPSTAQSQQEKTASRG 361 GFV F DA+A++Q + G + G P+RLS ++ N ST A R Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457 Query: 360 SEAEPQVDNNTSTSGQFGGEMEK 292 A VDN+ Q+ + + Sbjct: 458 PSAASSVDNSKQILEQYAEDKRR 480
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/56 (37%), Positives = 36/56 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 ++L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A ++DGR Sbjct: 27 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH-KVDGR 81
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/63 (26%), Positives = 39/63 (61%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 + LK+ F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++ Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 441 SLA 433 S A Sbjct: 113 SYA 115 Score = 38.1 bits (87), Expect = 0.022 Identities = 21/84 (25%), Positives = 44/84 (52%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 N P+ T SQ ++ +R Sbjct: 201 KFANNPSQKTNQAILSQLYQSPNR 224 Score = 33.5 bits (75), Expect = 0.54 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 303 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 351
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/56 (37%), Positives = 36/56 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 ++L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A ++DGR Sbjct: 27 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH-KVDGR 81
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/56 (37%), Positives = 36/56 (64%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 ++L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A ++DGR Sbjct: 27 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH-KVDGR 81
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 38.5 bits (88), Expect = 0.017 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE--LDGRPLR 445 +L+ FEG + A VI +R TG+SRG+GFV T+ D AA +A +DGR Sbjct: 26 SLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAAERACKDPNPIIDGRKAN 82 Query: 444 LSLA 433 ++LA Sbjct: 83 VNLA 86
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 38.1 bits (87), Expect = 0.022 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 34/123 (27%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG------- 457 +K FE + ++ ++ T + +G+ F+ + +D KAA + DG ++DG Sbjct: 154 IKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 213 Query: 456 ---------RPLRL-------------SLAAQNPPAGST-----PSTAQSQQEKTASRGS 358 RP RL + + P G T PS + ++EK+ +G Sbjct: 214 ERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQQPQGRTSQSEEPSRPREEREKSREKGK 273 Query: 357 EAE 349 E E Sbjct: 274 ERE 276
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 38.1 bits (87), Expect = 0.022 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Frame = -2 Query: 612 KTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 + A P + R+ + R RGFGFVSF +D A++ M+G ++ L + A Sbjct: 234 RIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293 Query: 432 A-------------QNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTS 319 +N P ++ S + + T + SE + + + + S Sbjct: 294 VFREDKQNDENEKNENEPIEASESAPTNVSDSTEPKASEVDSEEKSGVTAS 344 Score = 35.0 bits (79), Expect = 0.19 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 12/94 (12%) Frame = -2 Query: 537 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA--AQNPPA----------GSTPSTA 394 G FV+F+ +D A++ ++G LD R + + A Q P G P T+ Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETS 149 Query: 393 QSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEK 292 S + +++GS E + + T+ S ++K Sbjct: 150 TSVENAESAKGSSDENEANTATAPSSNEANGVDK 183
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 38.1 bits (87), Expect = 0.022 Identities = 21/69 (30%), Positives = 33/69 (47%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 370 G+ +GF + + T + A+AA + DG L LR+S A PP S + + Q Sbjct: 259 GQLKGFAVLEYETAEMAEAAQERADGQALGDSHLRVSFCAPGPPGRSMLAALIAAQATAL 318 Query: 369 SRGSEAEPQ 343 +RG P+ Sbjct: 319 NRGKGLLPE 327
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 38.1 bits (87), Expect = 0.022 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Frame = -2 Query: 627 RADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 RA LK+ F ++GA+V+ + +R +GFV+ T +A + + EL GR + Sbjct: 463 RAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMI 522 Query: 447 RLSLAAQNP-PAGSTPSTAQSQQEK 376 + A P S+ A Q+EK Sbjct: 523 SVEKAKNEPSEKKSSDRRACDQKEK 547
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 38.1 bits (87), Expect = 0.022 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 421 ++DTG+ +G VSF AKAA+ DG E G +++S A + P Sbjct: 276 DKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRP 322
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 38.1 bits (87), Expect = 0.022 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE--LDGRPLR 445 +L+ FEG + A VI +R TG+SRG+GFV T+ D AA +A +DGR Sbjct: 47 SLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAADRACKDPNPIIDGRKAN 103 Query: 444 LSLA 433 ++LA Sbjct: 104 VNLA 107
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 37.7 bits (86), Expect = 0.029 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 + ++ A+K + G V +F+ G+SRG G V F + K AL+ M+ +L G Sbjct: 109 YDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSG 168 Query: 456 RPLRL 442 RPL + Sbjct: 169 RPLNI 173 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/40 (32%), Positives = 26/40 (65%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 + G+S+G G V F + + A+ A + M+G+++ GR + + L Sbjct: 557 ENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREIDVRL 596 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = -2 Query: 588 GLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 418 G V I E G+SRG G V+F +A A+ +G L RP+ + + ++ P Sbjct: 257 GTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVP 313
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 37.7 bits (86), Expect = 0.029 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 ++ R RGF F+ + +DA AA+ M+ EL GR +R++LA Sbjct: 42 ESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLA 82
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 37.7 bits (86), Expect = 0.029 Identities = 21/56 (37%), Positives = 35/56 (62%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 ++L++ FE L V+ + +T RSRGFGFV++ T++ AA+ A ++DGR Sbjct: 27 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPH-KVDGR 81
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 37.4 bits (85), Expect = 0.038 Identities = 18/54 (33%), Positives = 32/54 (59%) Frame = -2 Query: 594 QPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 Q G + + + + G+S+GFGFV F T ++A A++ G G+PL +++A Sbjct: 326 QCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379 Score = 34.7 bits (78), Expect = 0.24 Identities = 19/67 (28%), Positives = 35/67 (52%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L AF L R+ + +GRS +G+ +F + QDA A++ + L+G+ +R+ Sbjct: 40 LYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMW 99 Query: 435 AAQNPPA 415 + + P A Sbjct: 100 SVRAPDA 106 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMD 475 L+ F+ +V +V D G+SRG+GFV F A AA+Q ++ Sbjct: 128 LQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLN 173
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 37.4 bits (85), Expect = 0.038 Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAM-DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 TG RGFGFV F T QDAK A A+ L GR L L A + T Q+ + K Sbjct: 862 TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA-------DSEVTVQTLRRK 914 Query: 375 TASRGSE 355 TA E Sbjct: 915 TARHFQE 921 Score = 33.1 bits (74), Expect = 0.71 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPL--RLSLAAQNPPAGSTPSTAQSQQEKTA 370 S GFGFV + + A+ AL+ + G +DG L R+S A P ST +++ T+ Sbjct: 765 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTS 824 Score = 29.6 bits (65), Expect = 7.9 Identities = 24/123 (19%), Positives = 52/123 (42%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G++ + + F L + F +D G+ R FGF+ F + ++A+AAL +D Sbjct: 12 GMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALNHFHRSFIDTT 70 Query: 453 PLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSNLQAT 274 + + ++ S P +K++ ++ V ++T + G + L+ Sbjct: 71 RITVEF-CKSFGDPSKPRAWSKHAQKSSQPKQPSQDSVPSDTKKDKKKKGPSDLEKLKED 129 Query: 273 ASY 265 A + Sbjct: 130 AKF 132
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 37.4 bits (85), Expect = 0.038 Identities = 20/84 (23%), Positives = 44/84 (52%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 153 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 212 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 N P+ + SQ ++ +R Sbjct: 213 KFANNPSQKSSQALLSQLYQSPNR 236 Score = 36.2 bits (82), Expect = 0.084 Identities = 14/47 (29%), Positives = 33/47 (70%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S A Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127 Score = 33.1 bits (74), Expect = 0.71 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 332 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 376
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 37.4 bits (85), Expect = 0.038 Identities = 20/84 (23%), Positives = 44/84 (52%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 200 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 N P+ + SQ ++ +R Sbjct: 201 KFANNPSQKSSQALLSQLYQSPNR 224 Score = 36.2 bits (82), Expect = 0.084 Identities = 14/47 (29%), Positives = 33/47 (70%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S A Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115 Score = 33.1 bits (74), Expect = 0.71 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 320 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 364
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 37.4 bits (85), Expect = 0.038 Identities = 24/61 (39%), Positives = 36/61 (59%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 LKT FE + G+V I + G S+GFGFV+ QDA+ A Q + G ++GR + ++ Sbjct: 169 LKTMFE-KFGVVSDVEIIFNERG-SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNC 226 Query: 435 A 433 A Sbjct: 227 A 227
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 37.4 bits (85), Expect = 0.038 Identities = 22/79 (27%), Positives = 40/79 (50%) Frame = -2 Query: 588 GLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 409 G + + + + G+S+GFGFV F T ++A A+ + + G+PL +++A + S Sbjct: 345 GTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRS 404 Query: 408 TPSTAQSQQEKTASRGSEA 352 AQ Q + R +A Sbjct: 405 --QLAQQIQARNQMRYQQA 421 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/82 (28%), Positives = 42/82 (51%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 + G+S+GFGFV F AK A+ A++G+ L+G+ + ++ + SQ E+ Sbjct: 160 ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-------PHLSRKERDSQLEE 212 Query: 375 TASRGSEAEPQVDNNTSTSGQF 310 T + + + N+ +T QF Sbjct: 213 TKAHYTNLYVKNINSETTDEQF 234 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Frame = -2 Query: 561 ERDT-GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 E+D G+ +GFGFV++ +DA A++A++ EL+G L + A Sbjct: 250 EKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 293
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 37.4 bits (85), Expect = 0.038 Identities = 20/84 (23%), Positives = 44/84 (52%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ ++G + G +++ Sbjct: 148 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 207 Query: 435 AAQNPPAGSTPSTAQSQQEKTASR 364 N P+ + SQ ++ +R Sbjct: 208 KFANNPSQKSSQALLSQLYQSPNR 231 Score = 36.2 bits (82), Expect = 0.084 Identities = 14/47 (29%), Positives = 33/47 (70%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S A Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122 Score = 33.1 bits (74), Expect = 0.71 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 327 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 371
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 37.4 bits (85), Expect = 0.038 Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAM-DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 376 TG RGFGFV F T QDAK A A+ L GR L L A + T Q+ + K Sbjct: 870 TGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWA-------DSEVTLQALRRK 922 Query: 375 TASRGSE 355 TA+ E Sbjct: 923 TAAHFHE 929 Score = 32.7 bits (73), Expect = 0.93 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ-NPPAGSTPSTAQSQQEKTAS 367 S GFGFV + + A+ AL+ + G +DG L + ++ + PA + Q +++T S Sbjct: 773 SMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTS 832 Query: 366 R 364 + Sbjct: 833 K 833
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 37.4 bits (85), Expect = 0.038 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 T + RGF FV F ++DA +A+ M+ E+ GR +R+++A Sbjct: 7 TEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 36.6 bits (83), Expect = 0.064 Identities = 18/62 (29%), Positives = 37/62 (59%) Frame = -2 Query: 570 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQ 391 ++++R+TG +G+G++ F + + ALQ ++G EL G+ + +S N P + +Q Sbjct: 95 LLYDRNTGTPKGYGYIEFESPAYREKALQ-LNGGELKGKKIAVSRKRTNIPGFNRHYNSQ 153 Query: 390 SQ 385 +Q Sbjct: 154 NQ 155
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 36.6 bits (83), Expect = 0.064 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 4/115 (3%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL----QAMDGV 469 W + L++ F +V ++ ++ T +SRGFGFV F L +DG Sbjct: 19 WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 78 Query: 468 ELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGG 304 +D +P P G P + ++ G + P+ DN+ S GG Sbjct: 79 NIDPKPC--------TPRGMQPERTRPKE------GWQKGPRSDNSKSNKIFVGG 119
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 36.2 bits (82), Expect = 0.084 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 D+L+ FE L V+ + T RSRGFGFV++ +++ AA+ A ++DGR Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPH-KVDGR 103
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 36.2 bits (82), Expect = 0.084 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 D+L+ FE L V+ + T RSRGFGFV++ +++ AA+ A ++DGR Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPH-KVDGR 103
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 36.2 bits (82), Expect = 0.084 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 D+L+ FE L V+ + T RSRGFGFV++ +++ A++ A ++DGR Sbjct: 41 DSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGR 95 Score = 31.2 bits (69), Expect = 2.7 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = -2 Query: 633 GVRADA----LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAALQAMDG 472 G++ D L+ FEG + V+ +R +G+ RGF FV+F H D K +Q Sbjct: 124 GIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD-KIVVQKYHT 182 Query: 471 VELDGRPLRLSLAAQNPPAGS 409 + L ++ +L+ Q S Sbjct: 183 INLHNCEVKKALSKQEMQTAS 203
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 36.2 bits (82), Expect = 0.084 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 D+L+ FE L V+ + T RSRGFGFV++ +++ A++ A ++DGR Sbjct: 41 DSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGR 95
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 36.2 bits (82), Expect = 0.084 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 D+L+ FE L V+ + T RSRGFGFV++ +++ AA+ A ++DGR Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPH-KVDGR 103
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 36.2 bits (82), Expect = 0.084 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + LK F + A+V+ E G+ +GFG V F + ++A A+ M+G + +P Sbjct: 313 INDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKP 370 Query: 450 LRLSL 436 L ++L Sbjct: 371 LHVTL 375 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D L F L R+ + T G+G+V+F DA+ AL M+ ++G+P Sbjct: 29 VTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP 88 Query: 450 LRL 442 RL Sbjct: 89 FRL 91
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 35.8 bits (81), Expect = 0.11 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 6/121 (4%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D L+ F+ +V R+ D+G+ +GF F+ F + + L+ ++ GRP Sbjct: 250 VTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRP 309 Query: 450 LRLSLAAQNPPAGSTPSTAQSQQE-KTASRGSEAEPQVDNNT--STSGQFGG---EMEKS 289 LR+ G S Q +++ + SR + + + NN +GQ G E ++S Sbjct: 310 LRMEY-------GEDRSKRQVRKKVENVSRNNSSSFDISNNKGYDRAGQDNGSKPEYKRS 362 Query: 288 N 286 N Sbjct: 363 N 363
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + LK F + A+V+ E G+ +GFG V F + ++A A+ M+G + +P Sbjct: 313 INDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 450 LRLSL 436 L ++L Sbjct: 371 LHVTL 375 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D L F L R+ + T G+G+V+F DA+ AL M+ ++G+P Sbjct: 29 VTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP 88 Query: 450 LRL 442 RL Sbjct: 89 FRL 91
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + LK F + A+V+ E G+ +GFG V F + ++A A+ M+G + +P Sbjct: 313 INDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 450 LRLSL 436 L ++L Sbjct: 371 LHVTL 375 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D L F L R+ + T G+G+V+F DA+ AL M+ ++G+P Sbjct: 29 VTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP 88 Query: 450 LRL 442 RL Sbjct: 89 FRL 91
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + LK F + A+V+ E G+ +GFG V F + ++A A+ M+G + +P Sbjct: 313 INDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 450 LRLSL 436 L ++L Sbjct: 371 LHVTL 375 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D L F L R+ + T G+G+V+F DA+ AL M+ ++G+P Sbjct: 29 VTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP 88 Query: 450 LRL 442 RL Sbjct: 89 FRL 91
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + LK F + A+V+ E G+ +GFG V F + ++A A+ M+G + +P Sbjct: 313 INDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 450 LRLSL 436 L ++L Sbjct: 371 LHVTL 375 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D L F L R+ + T G+G+V+F DA+ AL M+ ++G+P Sbjct: 29 VTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP 88 Query: 450 LRL 442 RL Sbjct: 89 FRL 91
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + + LK F + A+V+ E G+ +GFG V F + ++A A+ M+G + +P Sbjct: 313 INDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370 Query: 450 LRLSL 436 L ++L Sbjct: 371 LHVTL 375 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = -2 Query: 552 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V D L F L R+ + T G+G+V+F DA+ AL M+ ++G+P Sbjct: 29 VTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP 88 Query: 450 LRL 442 RL Sbjct: 89 FRL 91
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 35.4 bits (80), Expect = 0.14 Identities = 18/82 (21%), Positives = 39/82 (47%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 ++ D ++ AF + + ++ T + +GF FV + + A+ AL+ M+G + GR Sbjct: 141 LKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRN 200 Query: 450 LRLSLAAQNPPAGSTPSTAQSQ 385 +++ + P A Q + Sbjct: 201 IKVGRPSNMPQAQQVIDEVQEE 222
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 11/96 (11%) Frame = -2 Query: 531 GFVSFHTIQDAKAALQAMDGVELDGRPLRL-----------SLAAQNPPAGSTPSTAQSQ 385 G + F + D K AL+ +DG E++GR +RL S + + S + S+ Sbjct: 143 GVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSR 202 Query: 384 QEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSNLQA 277 + ++ S S++ + S SG +S Q+ Sbjct: 203 KSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQS 238
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 35.4 bits (80), Expect = 0.14 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELD 460 ++ TG+S+GF F+SFH +DA A+ + G D Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 306
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 35.4 bits (80), Expect = 0.14 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -2 Query: 561 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELD 460 ++ TG+S+GF F+SFH +DA A+ + G D Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 306
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 415 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 236 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 280 Score = 32.7 bits (73), Expect = 0.93 Identities = 13/45 (28%), Positives = 28/45 (62%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 +++ + T + +G+GFVS +A A++A++G + R L++S Sbjct: 468 KIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVS 512
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 415 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 200 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 244 Score = 32.7 bits (73), Expect = 0.93 Identities = 13/45 (28%), Positives = 28/45 (62%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 +++ + T + +G+GFVS +A A++A++G + R L++S Sbjct: 432 KIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVS 476
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 35.0 bits (79), Expect = 0.19 Identities = 26/110 (23%), Positives = 48/110 (43%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 VR + F ++ A+++ ++DTG+SRGFGFV T A A + +D + Sbjct: 254 VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV---TYDSADAVDRVCQNKFIDFKD 310 Query: 450 LRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGE 301 ++ + P + Q+K+++ G +N G FG + Sbjct: 311 RKIEIKRAEP---------RHMQQKSSNNGGNNGG--NNMNRRGGNFGNQ 349 Score = 33.9 bits (76), Expect = 0.42 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH---TIQDAKAALQAMDGVE 466 W D L+ F + +++ + TGRSRGFGF+SF ++ + +DG Sbjct: 168 WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKV 227 Query: 465 LD 460 +D Sbjct: 228 ID 229
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELD-GRPLRLSLAAQNPPAGSTPSTAQSQQEKT 373 G SRG+GFVSF + DA A+ DG ++ + L +S A + S+ QSQ + + Sbjct: 597 GSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKRGNLSSSDDDDQSQTDNS 656 Query: 372 A 370 + Sbjct: 657 S 657
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 370 G+ + F FV+F A+ ++G++L GRP+++ A + A S + Q Sbjct: 47 GKPKQFAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGN 106 Query: 369 SRGSEAEPQ--VDNNTSTS 319 S + P VDN T ++ Sbjct: 107 SSPTSTSPSRTVDNMTPSA 125
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 35.0 bits (79), Expect = 0.19 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = -2 Query: 618 ALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 +L AF G V AR+ + D S GFGF F T A+AAL M+G LD Sbjct: 607 SLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQAALAVMNGYTLDRH 666 Query: 453 PL 448 L Sbjct: 667 TL 668 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 +RGFGF F + ++A+ A+ A+ L GR L L A Sbjct: 736 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFA 772
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 35.0 bits (79), Expect = 0.19 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE--L 463 W LK F +V + + +TGRSRGFGF+ F +DA + + +D E L Sbjct: 77 WDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVLDQKEHRL 133 Query: 462 DGR 454 DGR Sbjct: 134 DGR 136
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 34.7 bits (78), Expect = 0.24 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 4/115 (3%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL----QAMDGV 469 W + L++ F +V ++ ++ T +SRGFGFV F L +DG Sbjct: 19 WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 78 Query: 468 ELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGG 304 +D +P P G P + ++ G + P+ D++ S GG Sbjct: 79 NIDPKPC--------TPRGMQPERTRPKE------GWQKGPRSDSSKSNKIFVGG 119
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 34.7 bits (78), Expect = 0.24 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMD------GVELDGRPLRLSLAAQNPPA 415 RV+ DT S+G F F T + A+ L A G++LDGR L++ LA A Sbjct: 354 RVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASPEAEGGGLKLDGRQLKVDLAVTRDEA 412 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = -2 Query: 627 RADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ---AMDGVELD 460 R+D L+ F + V+ E+ + RGFG+V+F ++D + AL+ +G ++D Sbjct: 15 RSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKID 73
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 34.7 bits (78), Expect = 0.24 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 11/96 (11%) Frame = -2 Query: 531 GFVSFHTIQDAKAALQAMDGVELDGRPLRL-----------SLAAQNPPAGSTPSTAQSQ 385 G + F + D K AL+ +DG E++GR +RL S + + S + S+ Sbjct: 143 GVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSR 202 Query: 384 QEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSNLQA 277 + ++ S S++ + S SG +S Q+ Sbjct: 203 KSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 34.7 bits (78), Expect = 0.24 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS----- 409 +++ + +TG +G+GF F + A++ ++ EL R +R+ + +P Sbjct: 37 KLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEYT 96 Query: 408 --TPSTAQSQQEKTASRGSEAEPQVDNNTST--SGQFGG 304 T + Q +S S P V ++TS+ + Q GG Sbjct: 97 ERTDRYMEQQNAHESSYNSRFIPPVLHSTSSLPASQGGG 135
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 34.3 bits (77), Expect = 0.32 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -2 Query: 540 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 34.3 bits (77), Expect = 0.32 Identities = 14/54 (25%), Positives = 30/54 (55%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 L+ FE + +++ + +G+ RG+ F+ + +D +A + DG ++DGR Sbjct: 119 LRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 34.3 bits (77), Expect = 0.32 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ----- 385 G+ + F FV+F A+ ++G++L GRP+++ + + A S + Q Sbjct: 47 GKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGN 106 Query: 384 QEKTASRGSEAEPQVDNNTSTS 319 T++ S E +DN TS++ Sbjct: 107 SSPTSTSPSRYERTMDNMTSSA 128
>ARP2_PLAFA (P13824) Clustered-asparagine-rich protein (CARP)| Length = 443 Score = 34.3 bits (77), Expect = 0.32 Identities = 15/38 (39%), Positives = 26/38 (68%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 GR+ GFGFVS+ + A+ A+Q M+G ++ + L++ L Sbjct: 395 GRNSGFGFVSYDNVISAQHAIQFMNGYFVNNKYLKVQL 432
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 34.3 bits (77), Expect = 0.32 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE--L 463 W LK F +V + + +TGRSRGFGF+ F +D+ + + +D E L Sbjct: 84 WDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKVLDQKEHRL 140 Query: 462 DGR 454 DGR Sbjct: 141 DGR 143
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/78 (29%), Positives = 38/78 (48%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 LK F +V A ++ ++D G+SRG G V+F +A A+ +G L RP+ + + Sbjct: 218 LKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 276 Query: 435 AAQNPPAGSTPSTAQSQQ 382 + P G + QQ Sbjct: 277 DERALPKGDFFPPERPQQ 294 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 + G+S+G G V F + + A+ A + M+G++L GR + Sbjct: 685 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 720
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.3 bits (77), Expect = 0.32 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -2 Query: 540 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.3 bits (77), Expect = 0.32 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -2 Query: 540 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 34.3 bits (77), Expect = 0.32 Identities = 14/54 (25%), Positives = 30/54 (55%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 L+ FE + +++ + +G+ RG+ F+ + +D +A + DG ++DGR Sbjct: 119 LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 34.3 bits (77), Expect = 0.32 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -2 Query: 540 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 34.3 bits (77), Expect = 0.32 Identities = 14/54 (25%), Positives = 30/54 (55%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 L+ FE + +++ + +G+ RG+ F+ + +D +A + DG ++DGR Sbjct: 119 LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 33.9 bits (76), Expect = 0.42 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Frame = -2 Query: 537 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL-AAQNPPAGSTPSTAQSQQEKTAS-- 367 GF FV F +DA+ A +DG ++G +RL + A+ P G+ ++S + ++ S Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSPR 95 Query: 366 RGSEAEPQ 343 R S P+ Sbjct: 96 RRSRTPPR 103
>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)| (Putative tumor suppressor LUCA15) (G15 protein) (NY-REN-9 antigen) Length = 815 Score = 33.9 bits (76), Expect = 0.42 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Frame = -2 Query: 606 AFEG-QPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 481 +FEG QP V + +R TG SRGF FV F+ +QDA + ++A Sbjct: 120 SFEGPQPADVR---LMKRKTGVSRGFAFVEFYHLQDATSWMEA 159 Score = 33.1 bits (74), Expect = 0.71 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Frame = -2 Query: 621 DALKTAFEGQPGLV--GARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG----VELD 460 D++ TA L R+I ++ T ++RGF FV + DA LQ + +++D Sbjct: 245 DSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 304 Query: 459 GRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSNLQ 280 G+ + + A++ S + + + A Q + S SG+ GG ++ S LQ Sbjct: 305 GKTIGVDF-AKSARKDLVLSDGNRVSAFSVASTAIAAAQWSSTQSQSGE-GGSVDYSYLQ 362
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 33.9 bits (76), Expect = 0.42 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V A++ F ++ R++ ++ TG +GFG+V F AL+ ++ EL GR Sbjct: 298 VEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK-LNNSELMGRK 356 Query: 450 LRL 442 LR+ Sbjct: 357 LRV 359
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 33.5 bits (75), Expect = 0.54 Identities = 23/78 (29%), Positives = 38/78 (48%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 LK F +V A ++ ++D G+SRG G V+F +A A+ +G L RP+ + + Sbjct: 179 LKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 237 Query: 435 AAQNPPAGSTPSTAQSQQ 382 + P G + QQ Sbjct: 238 DERALPKGDFFPPERPQQ 255 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 + G+S+G G V F + + A+ A + M+G++L GR + Sbjct: 646 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 681
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 33.5 bits (75), Expect = 0.54 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF---HTIQDAK-AALQAMDGVELDGR 454 ++LK FE +V V+ + T RSRGFGF+++ H + DA+ A +DG ++ + Sbjct: 31 ESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPK 90 Query: 453 PLRLSLAAQNPPAGST 406 P AG+T Sbjct: 91 RAVPRTEIGRPEAGAT 106
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 33.5 bits (75), Expect = 0.54 Identities = 20/64 (31%), Positives = 30/64 (46%) Frame = -2 Query: 603 FEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 424 F Q G V I G S+G+GFV+F T +DA+ LQ + + + L + A + Sbjct: 52 FFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRK 111 Query: 423 PPAG 412 G Sbjct: 112 QQVG 115
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 33.5 bits (75), Expect = 0.54 Identities = 20/64 (31%), Positives = 30/64 (46%) Frame = -2 Query: 603 FEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 424 F Q G V I G S+G+GFV+F T +DA+ LQ + + + L + A + Sbjct: 52 FFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRK 111 Query: 423 PPAG 412 G Sbjct: 112 QQVG 115
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 33.5 bits (75), Expect = 0.54 Identities = 23/78 (29%), Positives = 38/78 (48%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 LK F +V A ++ ++D G+SRG G V+F +A A+ +G L RP+ + + Sbjct: 219 LKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 277 Query: 435 AAQNPPAGSTPSTAQSQQ 382 + P G + QQ Sbjct: 278 DERALPKGDFFPPERPQQ 295 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -2 Query: 555 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 448 + G+S+G G V F + + A+ A + M+G++L GR + Sbjct: 686 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 721
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 33.5 bits (75), Expect = 0.54 Identities = 21/61 (34%), Positives = 31/61 (50%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+ FE L V+ T RSR FGFV++ +++A AA+ A +DG + L Sbjct: 23 LRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHA-VDGNTVELKR 81 Query: 435 A 433 A Sbjct: 82 A 82
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 33.1 bits (74), Expect = 0.71 Identities = 14/33 (42%), Positives = 24/33 (72%) Frame = -2 Query: 570 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 472 V+ ++TG+SRG FV+F + + A+ AL+ +DG Sbjct: 223 VVRNKETGKSRGLAFVTFSSEEVAEQALRFLDG 255
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 33.1 bits (74), Expect = 0.71 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 558 RDTGRSRGFGFVSFHTIQDAKAALQAMDGVEL 463 RD RGFGFV F +DA A+ +DG EL Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 33.1 bits (74), Expect = 0.71 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ----AMDGV 469 W + L F ++ V+ ++GRSRGFGFV+F + LQ +DG Sbjct: 16 WETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGR 75 Query: 468 ELDGRP 451 +D +P Sbjct: 76 TIDPKP 81 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L+T F + ++++++ +SRGFGF+SF + + L+G+ + + Sbjct: 112 LRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNER-YINLNGKQVEIKK 170 Query: 435 AAQNPPAG---STPSTAQSQQEKTASRGSEAEPQ---VDNNTSTSGQFGG 304 A +G S ST K + S P ++ +GQ GG Sbjct: 171 AEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGG 220
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 33.1 bits (74), Expect = 0.71 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 R++ ++DT + +GF +V F + K AL DG L R LR+ +A Sbjct: 70 RLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 115
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 33.1 bits (74), Expect = 0.71 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 R++ ++DT + +GF +V F + K AL DG L R LR+ +A Sbjct: 70 RLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 115
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 33.1 bits (74), Expect = 0.71 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -2 Query: 603 FEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 424 F Q G V I G S+G+GF++F T +DA+ LQ + + + L + A + Sbjct: 52 FFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAEKLNYKDKKLNIGPAIRK 111 Query: 423 PPAG 412 G Sbjct: 112 QQVG 115
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 33.1 bits (74), Expect = 0.71 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 ++L+ +E L V+ + + RSRGFGFV+F ++ + AA+ A +DGR + Sbjct: 23 ESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPH-SIDGRVVEP 81 Query: 441 SLAAQNPPAG 412 A +G Sbjct: 82 KRAVAREESG 91 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = -2 Query: 633 GVRADA----LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAALQAMDG 472 G++ D L+ FE + +I +R +G+ RGFGFV+F H D K LQ Sbjct: 106 GIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVD-KIVLQKYHT 164 Query: 471 VELDGRPLRLSLAAQ 427 + +R +L+ Q Sbjct: 165 INGHNAEVRKALSRQ 179
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 33.1 bits (74), Expect = 0.71 Identities = 13/35 (37%), Positives = 24/35 (68%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 S+G+ +V F ++A+ AL+ MDG ++DG+ + S Sbjct: 179 SKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITAS 213
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 33.1 bits (74), Expect = 0.71 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 558 RDTGRSRGFGFVSFHTIQDAKAALQAMDGVEL 463 RD RGFGFV F +DA A+ +DG EL Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>GRPE_PROMM (Q7V9C9) Protein grpE (HSP-70 cofactor)| Length = 237 Score = 33.1 bits (74), Expect = 0.71 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Frame = -2 Query: 474 GVELDGRPLRLSLA----AQNPPAGSTPSTAQSQQEKTASRGSEAEP 346 G L+GR LR +L P +G++PS+AQ + TA+ EA+P Sbjct: 186 GYHLNGRVLRHALVKVSMGPGPQSGASPSSAQPNDDSTATFQGEADP 232
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 33.1 bits (74), Expect = 0.71 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 ++L+ +E L V+ + + RSRGFGFV+F ++ + AA+ A +DGR + Sbjct: 35 ESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPH-SIDGRVVEP 93 Query: 441 SLAAQNPPAG 412 A +G Sbjct: 94 KRAVAREESG 103 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = -2 Query: 633 GVRADA----LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAALQAMDG 472 G++ D L+ FE + +I +R +G+ RGFGFV+F H D K LQ Sbjct: 118 GIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVD-KIVLQKYHT 176 Query: 471 VELDGRPLRLSLAAQ 427 + +R +L+ Q Sbjct: 177 INGHNAEVRKALSRQ 191
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 33.1 bits (74), Expect = 0.71 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 558 RDTGRSRGFGFVSFHTIQDAKAALQAMDGVEL 463 RD RGFGFV F +DA A+ +DG EL Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 32.7 bits (73), Expect = 0.93 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF---HTIQDAK-AALQAMDGVELDGR 454 D LK FE +V V+ + T RSRGFGF+++ + I +A+ A +DG ++ + Sbjct: 38 DGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPK 97 Query: 453 PLRLSLAAQNPPAGST 406 +P AG+T Sbjct: 98 RAVPRQEIDSPNAGAT 113 Score = 31.6 bits (70), Expect = 2.1 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA-KAALQAMDGVELDGRPLR 445 + L+ F+ +V ++ ++DTG+ RGF F+ F K LQ ++ ++ Sbjct: 129 ECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVK 188 Query: 444 LSLAAQN 424 ++A Q+ Sbjct: 189 KAIAKQD 195
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/63 (34%), Positives = 31/63 (49%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 V AL+ F +V R++ TG RGFG+V F AL+ ++ EL GR Sbjct: 296 VDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-LNNSELMGRK 354 Query: 450 LRL 442 LR+ Sbjct: 355 LRV 357
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 32.7 bits (73), Expect = 0.93 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 537 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 406 GF V + T + A+ Q DG+ + G ++LS A P ST Sbjct: 262 GFAVVEYSTAEHAEEVQQVADGITIKGSQVQLSFCAPGAPGRST 305
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 32.7 bits (73), Expect = 0.93 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -2 Query: 537 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 406 GF V + T + A+ QA DG+ + G +++S A P ST Sbjct: 273 GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRST 316
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 32.7 bits (73), Expect = 0.93 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -2 Query: 531 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 364 G + F + D K AL +DG E++GR +RL ++ P S + + ++ SR Sbjct: 149 GVIEFRSYSDMKRALDKLDGTEINGRNIRL---IEDKPRTSHRRSYSGSRSRSRSR 201
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 32.7 bits (73), Expect = 0.93 Identities = 21/63 (33%), Positives = 31/63 (49%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 + AL+ F +V R++ TG RGFG+V F AL+ ++ EL GR Sbjct: 302 IEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-LNNSELMGRK 360 Query: 450 LRL 442 LR+ Sbjct: 361 LRV 363
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 32.7 bits (73), Expect = 0.93 Identities = 12/48 (25%), Positives = 29/48 (60%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 +V ++ ++ TG+S+GF F+ + + A+ +G+++ GR +R+ Sbjct: 62 IVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 109
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 32.7 bits (73), Expect = 0.93 Identities = 14/49 (28%), Positives = 30/49 (61%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 439 + +VI + +T + +GFGFV+ ++A A+ +++G L + L++S Sbjct: 270 VTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/56 (33%), Positives = 31/56 (55%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 ++L+ +E L V+ + + RSRGFGFV+F + + AA+ A +DGR Sbjct: 23 ESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHT-IDGR 77 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Frame = -2 Query: 633 GVRADA----LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA-KAALQAMDGV 469 G++ D L+ FE + +I ++ +G+ RGFGFV+F+ K LQ + Sbjct: 106 GIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTI 165 Query: 468 ELDGRPLRLSLAAQ 427 +R +L+ Q Sbjct: 166 NGHNAEVRKALSKQ 179
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -2 Query: 633 GVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 G+ LK+ FE ++ RV + TG S+G+GFV F + AK + M+ + R Sbjct: 55 GLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETMNNYLMGER 114 Query: 453 PLR 445 ++ Sbjct: 115 IIK 117
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 S+GFGFV+F DA A + + G ++GR + ++ A Sbjct: 155 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 S+GFGFV+F DA A + + G ++GR + ++ A Sbjct: 159 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 195
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -2 Query: 543 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 433 S+GFGFV+F DA A + + G ++GR + ++ A Sbjct: 154 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 190
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 32.3 bits (72), Expect = 1.2 Identities = 12/48 (25%), Positives = 29/48 (60%) Frame = -2 Query: 585 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 442 +V ++ ++ TG+S+GF F+ + + A+ +G+++ GR +R+ Sbjct: 62 IVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = -2 Query: 627 RADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 R + L+ F G+ + +++TGR++GF FVS++ D A++A D LDG Sbjct: 214 REEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYY---DRDCAIKARD--RLDG 265
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 32.3 bits (72), Expect = 1.2 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 1/108 (0%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA-KAALQAMDGVELDGRPLR 445 D L+ FE + ++ +R +G+ RGF FV+F K +Q V +R Sbjct: 119 DHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVR 178 Query: 444 LSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGE 301 +L S+QE + GS+ E N + G FG + Sbjct: 179 KAL---------------SKQEMASVSGSQRERGGSGNYGSRGGFGND 211 Score = 32.0 bits (71), Expect = 1.6 Identities = 19/56 (33%), Positives = 33/56 (58%) Frame = -2 Query: 621 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 454 ++L+ FE L V+ + ++ RSRGFGFV++ + + AA+ A ++DGR Sbjct: 28 ESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPH-KVDGR 82
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/77 (23%), Positives = 37/77 (48%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 +G A+ L+ F G + ++ ++ +G +GF ++ F + + +L A+D G Sbjct: 176 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 234 Query: 456 RPLRLSLAAQNPPAGST 406 R +++ N P ST Sbjct: 235 RQIKVIPKRTNRPGIST 251
>RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif protein 10)| (S1-1 protein) Length = 852 Score = 32.0 bits (71), Expect = 1.6 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 24/103 (23%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE----LDGRPLRLSLA-------AQ 427 RVI ++ T +RGF F+ TI +A LQ + + +DG+ + + A A Sbjct: 255 RVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMAS 314 Query: 426 NP----PAGSTPSTAQSQQE---KTASRGSEA------EPQVD 337 N A S STA + + AS+G E+ EP VD Sbjct: 315 NEGSRINAASVASTAIAAAQWAISQASQGGESTWAAPEEPPVD 357 Score = 30.8 bits (68), Expect = 3.5 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -2 Query: 573 RVIFERDTGRSRGFGFVSFHTIQDAKAALQA 481 R++ + +G+SRGF FV F +QDA ++A Sbjct: 83 RLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 113
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/77 (23%), Positives = 37/77 (48%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 +G A+ L+ F G + ++ ++ +G +GF ++ F + + +L A+D G Sbjct: 180 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 238 Query: 456 RPLRLSLAAQNPPAGST 406 R +++ N P ST Sbjct: 239 RQIKVIPKRTNRPGIST 255
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/77 (23%), Positives = 37/77 (48%) Frame = -2 Query: 636 WGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDG 457 +G A+ L+ F G + ++ ++ +G +GF ++ F + + +L A+D G Sbjct: 180 YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 238 Query: 456 RPLRLSLAAQNPPAGST 406 R +++ N P ST Sbjct: 239 RQIKVIPKRTNRPGIST 255
>CPO_DROME (Q01617) Protein couch potato| Length = 738 Score = 32.0 bits (71), Expect = 1.6 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%) Frame = -2 Query: 603 FEGQPGLVGARVIFERDTGRSRG-FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 427 F G G+ + G++ GFV+FHT A+AA Q + GV D Sbjct: 471 FRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQDLQGVRFD----------- 519 Query: 426 NPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTS 319 P T + + K+ ++ S+ +PQ + T+ S Sbjct: 520 ----PDMPQTIRLEFAKSNTKVSKPKPQPNTATTAS 551
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -2 Query: 630 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 451 VR + L F L + +R+ G+ + FGFV F + A+ ++G+ L GRP Sbjct: 21 VREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 79 Query: 450 LRL 442 + + Sbjct: 80 INV 82
>MLO3_SCHPO (Q09330) Protein mlo3| Length = 199 Score = 31.6 bits (70), Expect = 2.1 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 12/91 (13%) Frame = -2 Query: 549 GRSRGFGFVSFHTIQDAKAALQAMDGVELDG-RPLRL-----------SLAAQNPPAGST 406 GRS+G + F DA A + +G +DG R +++ SLAA+ PA + Sbjct: 93 GRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNA 152 Query: 405 PSTAQSQQEKTASRGSEAEPQVDNNTSTSGQ 313 +TA K++ R + + N S + Sbjct: 153 SATASKNGAKSSKRKTTRRRRTPNRPKKSAE 183
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = -2 Query: 615 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 436 L F + ++I +R G S+G+GFV+F T Q+A+ + V L R L ++ Sbjct: 49 LTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQADGECVVLRDRKLNIAP 107 Query: 435 AAQNPP 418 A + P Sbjct: 108 AIKKQP 113
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 31.6 bits (70), Expect = 2.1 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = -2 Query: 558 RDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 412 RD GFGFV F +DA+ A+ ++G EL G R+ L P G Sbjct: 30 RDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGE--RVILDYSKPRGG 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,047,101 Number of Sequences: 219361 Number of extensions: 2057094 Number of successful extensions: 6778 Number of sequences better than 10.0: 293 Number of HSP's better than 10.0 without gapping: 6243 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6767 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
