Clone Name | rbah63p06 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ224325.1|HVH224325 Hordeum vulgare cv. Haisa mRNA for cp33Hv protein Length = 1311 Score = 1158 bits (584), Expect = 0.0 Identities = 590/592 (99%) Strand = Plus / Minus Query: 46 tgaattcaacatgttttcatgaagcactttggatccagatatttctgcaacatatattac 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1299 tgaattcaacatgttttcatgaagcactttggatccagatatttctgcaacatatattac 1240 Query: 106 aagagtctaataataatctaatgtgcgtagctggaacccacttttgcgtcaaaattttcg 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1239 aagagtctaataataatctaatgtgcgtagctggaacccacttttgcgtcaaaattttcg 1180 Query: 166 ctcagaccagcacatcttgaattcgaacggcagaattttgtgaaccggtgccccaagctt 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1179 ctcagaccagcacatcttgaattcgaacggcagaattttgtgaaccggtgccccaagctt 1120 Query: 226 acaactgaatcatctctacctgtctattagtttttactaatagctggcagttgcctgtaa 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1119 acaactgaatcatctctacctgtctattagtttttactaatagctggcagttgcctgtaa 1060 Query: 286 gttgctcttttccatctcgcctccaaattgtcctgaagtactagtgttattgtcgacctg 345 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1059 gttgctcttttccatttcgcctccaaattgtcctgaagtaatagtgttattgtcgacctg 1000 Query: 346 tggctcagcctcagatccacgtgaggctgttttttcttgctgtgactgcgctgtgctagg 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 999 tggctcagcctcagatccacgtgaggctgttttttcttgctgtgactgcgctgtgctagg 940 Query: 406 agttgatccagctggagggttctgtgctgccagactaagtcggagtggcctcccatccag 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 939 agttgatccagctggagggttctgtgctgccagactaagtcggagtggcctcccatccag 880 Query: 466 ttccactccgtccatggcctgcaaggcagcctttgcatcttgtatggtgtggaaggagac 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 879 ttccactccgtccatggcctgcaaggcagcctttgcatcttgtatggtgtggaaggagac 820 Query: 526 aaagccaaaccccctcgaacgaccggtgtcacgctcgaagattaccctggcaccaaccaa 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 819 aaagccaaaccccctcgaacgaccggtgtcacgctcgaagattaccctggcaccaaccaa 760 Query: 586 gccaggctgcccttcaaatgccgtcttgagtgcgtcagcccgcacaccccaa 637 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 759 gccaggctgcccttcaaatgccgtcttgagtgcgtcagcccgcacaccccaa 708
>ref|XM_476683.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1299 Score = 77.8 bits (39), Expect = 4e-11 Identities = 170/213 (79%), Gaps = 3/213 (1%) Strand = Plus / Minus Query: 385 ctgtgactgcgctgtgctaggagttgatccagctggagggttctgtgctgccagactaag 444 |||||||||| |||||||||||| | ||||||| ||||||||| | |||| ||| || Sbjct: 971 ctgtgactgcactgtgctaggag---aaccagctgttgggttctgttccgccatactgag 915 Query: 445 tcggagtggcctcccatccagttccactccgtccatggcctgcaaggcagcctttgcatc 504 | |||||||| || |||||||||||||| |||| |||| ||| ||||||| |||||| Sbjct: 914 cctcagtggccttccttccagttccactccatccaatgcctccaatgcagcctgtgcatc 855 Query: 505 ttgtatggtgtggaaggagacaaagccaaaccccctcgaacgaccggtgtcacgctcgaa 564 | | || ||||||||| || || || ||||| || ||||||| ||| |||||||| Sbjct: 854 ctctgcagtcctgaaggagacgaatccgaaacccctggaccgaccggagtcgcgctcgaa 795 Query: 565 gattaccctggcaccaaccaagccaggctgccc 597 ||| ||||| ||| ||| |||||| |||||||| Sbjct: 794 gatgaccctagcatcaagcaagccgggctgccc 762
>ref|XM_507351.1| PREDICTED Oryza sativa (japonica cultivar-group), P0455F03.24 mRNA Length = 1327 Score = 77.8 bits (39), Expect = 4e-11 Identities = 170/213 (79%), Gaps = 3/213 (1%) Strand = Plus / Minus Query: 385 ctgtgactgcgctgtgctaggagttgatccagctggagggttctgtgctgccagactaag 444 |||||||||| |||||||||||| | ||||||| ||||||||| | |||| ||| || Sbjct: 969 ctgtgactgcactgtgctaggag---aaccagctgttgggttctgttccgccatactgag 913 Query: 445 tcggagtggcctcccatccagttccactccgtccatggcctgcaaggcagcctttgcatc 504 | |||||||| || |||||||||||||| |||| |||| ||| ||||||| |||||| Sbjct: 912 cctcagtggccttccttccagttccactccatccaatgcctccaatgcagcctgtgcatc 853 Query: 505 ttgtatggtgtggaaggagacaaagccaaaccccctcgaacgaccggtgtcacgctcgaa 564 | | || ||||||||| || || || ||||| || ||||||| ||| |||||||| Sbjct: 852 ctctgcagtcctgaaggagacgaatccgaaacccctggaccgaccggagtcgcgctcgaa 793 Query: 565 gattaccctggcaccaaccaagccaggctgccc 597 ||| ||||| ||| ||| |||||| |||||||| Sbjct: 792 gatgaccctagcatcaagcaagccgggctgccc 760
>ref|XM_506168.2| PREDICTED Oryza sativa (japonica cultivar-group), P0455F03.24 mRNA Length = 1390 Score = 77.8 bits (39), Expect = 4e-11 Identities = 170/213 (79%), Gaps = 3/213 (1%) Strand = Plus / Minus Query: 385 ctgtgactgcgctgtgctaggagttgatccagctggagggttctgtgctgccagactaag 444 |||||||||| |||||||||||| | ||||||| ||||||||| | |||| ||| || Sbjct: 986 ctgtgactgcactgtgctaggag---aaccagctgttgggttctgttccgccatactgag 930 Query: 445 tcggagtggcctcccatccagttccactccgtccatggcctgcaaggcagcctttgcatc 504 | |||||||| || |||||||||||||| |||| |||| ||| ||||||| |||||| Sbjct: 929 cctcagtggccttccttccagttccactccatccaatgcctccaatgcagcctgtgcatc 870 Query: 505 ttgtatggtgtggaaggagacaaagccaaaccccctcgaacgaccggtgtcacgctcgaa 564 | | || ||||||||| || || || ||||| || ||||||| ||| |||||||| Sbjct: 869 ctctgcagtcctgaaggagacgaatccgaaacccctggaccgaccggagtcgcgctcgaa 810 Query: 565 gattaccctggcaccaaccaagccaggctgccc 597 ||| ||||| ||| ||| |||||| |||||||| Sbjct: 809 gatgaccctagcatcaagcaagccgggctgccc 777
>dbj|AK104773.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B02, full insert sequence Length = 1327 Score = 77.8 bits (39), Expect = 4e-11 Identities = 170/213 (79%), Gaps = 3/213 (1%) Strand = Plus / Minus Query: 385 ctgtgactgcgctgtgctaggagttgatccagctggagggttctgtgctgccagactaag 444 |||||||||| |||||||||||| | ||||||| ||||||||| | |||| ||| || Sbjct: 969 ctgtgactgcactgtgctaggag---aaccagctgttgggttctgttccgccatactgag 913 Query: 445 tcggagtggcctcccatccagttccactccgtccatggcctgcaaggcagcctttgcatc 504 | |||||||| || |||||||||||||| |||| |||| ||| ||||||| |||||| Sbjct: 912 cctcagtggccttccttccagttccactccatccaatgcctccaatgcagcctgtgcatc 853 Query: 505 ttgtatggtgtggaaggagacaaagccaaaccccctcgaacgaccggtgtcacgctcgaa 564 | | || ||||||||| || || || ||||| || ||||||| ||| |||||||| Sbjct: 852 ctctgcagtcctgaaggagacgaatccgaaacccctggaccgaccggagtcgcgctcgaa 793 Query: 565 gattaccctggcaccaaccaagccaggctgccc 597 ||| ||||| ||| ||| |||||| |||||||| Sbjct: 792 gatgaccctagcatcaagcaagccgggctgccc 760
>dbj|AK099188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110K07, full insert sequence Length = 1299 Score = 77.8 bits (39), Expect = 4e-11 Identities = 170/213 (79%), Gaps = 3/213 (1%) Strand = Plus / Minus Query: 385 ctgtgactgcgctgtgctaggagttgatccagctggagggttctgtgctgccagactaag 444 |||||||||| |||||||||||| | ||||||| ||||||||| | |||| ||| || Sbjct: 971 ctgtgactgcactgtgctaggag---aaccagctgttgggttctgttccgccatactgag 915 Query: 445 tcggagtggcctcccatccagttccactccgtccatggcctgcaaggcagcctttgcatc 504 | |||||||| || |||||||||||||| |||| |||| ||| ||||||| |||||| Sbjct: 914 cctcagtggccttccttccagttccactccatccaatgcctccaatgcagcctgtgcatc 855 Query: 505 ttgtatggtgtggaaggagacaaagccaaaccccctcgaacgaccggtgtcacgctcgaa 564 | | || ||||||||| || || || ||||| || ||||||| ||| |||||||| Sbjct: 854 ctctgcagtcctgaaggagacgaatccgaaacccctggaccgaccggagtcgcgctcgaa 795 Query: 565 gattaccctggcaccaaccaagccaggctgccc 597 ||| ||||| ||| ||| |||||| |||||||| Sbjct: 794 gatgaccctagcatcaagcaagccgggctgccc 762
>dbj|AK067376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106F16, full insert sequence Length = 1389 Score = 77.8 bits (39), Expect = 4e-11 Identities = 170/213 (79%), Gaps = 3/213 (1%) Strand = Plus / Minus Query: 385 ctgtgactgcgctgtgctaggagttgatccagctggagggttctgtgctgccagactaag 444 |||||||||| |||||||||||| | ||||||| ||||||||| | |||| ||| || Sbjct: 985 ctgtgactgcactgtgctaggag---aaccagctgttgggttctgttccgccatactgag 929 Query: 445 tcggagtggcctcccatccagttccactccgtccatggcctgcaaggcagcctttgcatc 504 | |||||||| || |||||||||||||| |||| |||| ||| ||||||| |||||| Sbjct: 928 cctcagtggccttccttccagttccactccatccaatgcctccaatgcagcctgtgcatc 869 Query: 505 ttgtatggtgtggaaggagacaaagccaaaccccctcgaacgaccggtgtcacgctcgaa 564 | | || ||||||||| || || || ||||| || ||||||| ||| |||||||| Sbjct: 868 ctctgcagtcctgaaggagacgaatccgaaacccctggaccgaccggagtcgcgctcgaa 809 Query: 565 gattaccctggcaccaaccaagccaggctgccc 597 ||| ||||| ||| ||| |||||| |||||||| Sbjct: 808 gatgaccctagcatcaagcaagccgggctgccc 776
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 517 gaaggagacaaagccaaaccccctcgaacgaccggtgtcacgctcgaagattaccctggc 576 ||||||||| || || || ||||| || ||||||| ||| ||||||||||| ||||| || Sbjct: 3155676 gaaggagacgaatccgaaacccctggaccgaccggagtcgcgctcgaagatgaccctagc 3155735 Query: 577 accaaccaagccaggctgccc 597 | ||| |||||| |||||||| Sbjct: 3155736 atcaagcaagccgggctgccc 3155756
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455F03 Length = 158201 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 517 gaaggagacaaagccaaaccccctcgaacgaccggtgtcacgctcgaagattaccctggc 576 ||||||||| || || || ||||| || ||||||| ||| ||||||||||| ||||| || Sbjct: 70666 gaaggagacgaatccgaaacccctggaccgaccggagtcgcgctcgaagatgaccctagc 70725 Query: 577 accaaccaagccaggctgccc 597 | ||| |||||| |||||||| Sbjct: 70726 atcaagcaagccgggctgccc 70746
>emb|AJ272011.1|NPL272011 Nicotiana plumbaginifolia mRNA for oligouridylate binding protein (ubp1 gene) Length = 1668 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 516 ggaaggagacaaagccaaaccccctcga 543 ||||||||||||| |||||||||||||| Sbjct: 725 ggaaggagacaaatccaaaccccctcga 698
>gb|AC164428.4| Mus musculus BAC clone RP24-150D18 from chromosome 1, complete sequence Length = 170692 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 cctcccatccagttccactcc 474 ||||||||||||||||||||| Sbjct: 40260 cctcccatccagttccactcc 40240
>gb|AC121861.3| Mus musculus BAC clone RP24-108P23 from chromosome 1, complete sequence Length = 185558 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 cctcccatccagttccactcc 474 ||||||||||||||||||||| Sbjct: 67347 cctcccatccagttccactcc 67367
>ref|XM_779770.1| PREDICTED: Strongylocentrotus purpuratus similar to Nuclear receptor ROR-alpha (Nuclear receptor RZR-alpha) (LOC579666), partial mRNA Length = 3311 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 ccatccagttccactccgtcc 478 ||||||||||||||||||||| Sbjct: 221 ccatccagttccactccgtcc 241
>emb|BX004804.10| Zebrafish DNA sequence from clone CH211-39M5 in linkage group 5, complete sequence Length = 170010 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ctcagaccagcacatcttgaa 186 ||||||||||||||||||||| Sbjct: 113160 ctcagaccagcacatcttgaa 113140
>emb|BX530075.7| Zebrafish DNA sequence from clone CH211-1O14 in linkage group 5, complete sequence Length = 176078 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ctcagaccagcacatcttgaa 186 ||||||||||||||||||||| Sbjct: 25370 ctcagaccagcacatcttgaa 25350
>gb|AC101951.11| Mus musculus chromosome 1, clone RP24-153P16, complete sequence Length = 174693 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 atattatacagtacaatatacaaaacatc 40 ||||||||||| |||||||| |||||||| Sbjct: 61167 atattatacagaacaatatataaaacatc 61195
>emb|AL670708.9| Mouse DNA sequence from clone RP23-125A21 on chromosome 4, complete sequence Length = 207097 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 cctcccatccagttccactcc 474 ||||||||||||||||||||| Sbjct: 127580 cctcccatccagttccactcc 127600
>ref|XM_511930.1| PREDICTED: Pan troglodytes LOC455180 (LOC455180), mRNA Length = 2712 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 153 ccctggcaccaaccaagcca 172
>ref|NM_003110.4| Homo sapiens Sp2 transcription factor (SP2), mRNA Length = 3031 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 491 ccctggcaccaaccaagcca 510
>gb|AC116409.9| Mus musculus chromosome 3, clone RP24-337P23, complete sequence Length = 162232 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ctgttttttcttgctgtgac 391 |||||||||||||||||||| Sbjct: 128498 ctgttttttcttgctgtgac 128517
>ref|NM_178005.1| Mus musculus leucine rich repeat transmembrane neuronal 2 (Lrrtm2), mRNA Length = 3660 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 tgtatggtgtggaaggagac 525 |||||||||||||||||||| Sbjct: 3229 tgtatggtgtggaaggagac 3248
>gb|BC033814.2| Homo sapiens Sp2 transcription factor, mRNA (cDNA clone MGC:45308 IMAGE:5208525), complete cds Length = 3031 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 491 ccctggcaccaaccaagcca 510
>gb|BC016680.2| Homo sapiens Sp2 transcription factor, mRNA (cDNA clone MGC:21349 IMAGE:4338754), complete cds Length = 2876 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 507 ccctggcaccaaccaagcca 526
>ref|XM_382202.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02026.1) partial mRNA Length = 5715 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 gatccagctggagggttctg 429 |||||||||||||||||||| Sbjct: 896 gatccagctggagggttctg 877
>gb|AC139348.4| Mus musculus BAC clone RP24-336F19 from chromosome 18, complete sequence Length = 145012 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 catgttttcatgaagcactt 74 |||||||||||||||||||| Sbjct: 87878 catgttttcatgaagcactt 87897
>gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, complete sequence Length = 164190 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 tgtatggtgtggaaggagac 525 |||||||||||||||||||| Sbjct: 82429 tgtatggtgtggaaggagac 82448
>gb|AC113025.9| Mus musculus chromosome 6, clone RP23-196D12, complete sequence Length = 223925 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 agtggcctcccatccagttc 468 |||||||||||||||||||| Sbjct: 176800 agtggcctcccatccagttc 176819
>gb|AC027644.9| Homo sapiens BAC clone RP11-792A8 from 7, complete sequence Length = 188207 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ttttttcttgctgtgactgc 394 |||||||||||||||||||| Sbjct: 132379 ttttttcttgctgtgactgc 132360
>gb|AC006001.2| Homo sapiens PAC clone RP4-756H11 from 7, complete sequence Length = 135044 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ttttttcttgctgtgactgc 394 |||||||||||||||||||| Sbjct: 26800 ttttttcttgctgtgactgc 26781
>gb|AC149307.17| Medicago truncatula clone mth2-91a15, complete sequence Length = 136553 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cagcacatcttgaattcgaa 192 |||||||||||||||||||| Sbjct: 82221 cagcacatcttgaattcgaa 82240 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cagcacatcttgaattcgaa 192 |||||||||||||||||||| Sbjct: 74649 cagcacatcttgaattcgaa 74668
>gb|AC107742.10| Mus musculus chromosome 15, clone RP23-331D7, complete sequence Length = 223952 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 tgctcttttccatctcgcct 307 |||||||||||||||||||| Sbjct: 124320 tgctcttttccatctcgcct 124339
>emb|AL355980.6| Human DNA sequence from clone RP11-295L12 on chromosome 13, complete sequence Length = 191856 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aattcaacatgttttcatga 67 |||||||||||||||||||| Sbjct: 20051 aattcaacatgttttcatga 20070
>gb|AC084026.14| Homo sapiens chromosome 8, clone RP11-486M23, complete sequence Length = 185759 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 tatacagtacaatatacaaaacat 39 ||||||||| |||||||||||||| Sbjct: 105000 tatacagtaaaatatacaaaacat 105023
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 catgaagcactttggatcca 82 |||||||||||||||||||| Sbjct: 239037 catgaagcactttggatcca 239018
>emb|CR786568.9| Zebrafish DNA sequence from clone DKEY-251I10 in linkage group 5, complete sequence Length = 134388 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 atatttctgcaacatatatt 103 |||||||||||||||||||| Sbjct: 77940 atatttctgcaacatatatt 77921
>gb|AC012537.12| Homo sapiens chromosome 8, clone RP11-115A18, complete sequence Length = 157030 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 gttttttcttgctgtgactg 393 |||||||||||||||||||| Sbjct: 76198 gttttttcttgctgtgactg 76179
>gb|AC022182.8| Homo sapiens chromosome 8, clone RP11-174G1, complete sequence Length = 172420 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gttttttcttgctgtgactg 393 |||||||||||||||||||| Sbjct: 3977 gttttttcttgctgtgactg 3996
>emb|BX950862.7| Zebrafish DNA sequence from clone CH211-194L2 in linkage group 22, complete sequence Length = 193558 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aagagtctaataataatcta 125 |||||||||||||||||||| Sbjct: 50379 aagagtctaataataatcta 50360
>gb|AC105015.3| Homo sapiens chromosome 8, clone RP11-589O3, complete sequence Length = 178520 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 gttttttcttgctgtgactg 393 |||||||||||||||||||| Sbjct: 55175 gttttttcttgctgtgactg 55156
>gb|AC116428.1| Homo sapiens chromosome 5 clone CTD-2587M2, complete sequence Length = 153204 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 aattcaacatgttttcatga 67 |||||||||||||||||||| Sbjct: 20121 aattcaacatgttttcatga 20102
>gb|AC105343.4| Homo sapiens BAC clone RP11-423J7 from 4, complete sequence Length = 155217 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aattcaacatgttttcatga 67 |||||||||||||||||||| Sbjct: 146533 aattcaacatgttttcatga 146552
>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence Length = 150214 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 tttttactaatagctggcag 275 |||||||||||||||||||| Sbjct: 147330 tttttactaatagctggcag 147311
>gb|AC018521.8| Homo sapiens chromosome 17, clone RP11-6N17, complete sequence Length = 143494 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 80670 ccctggcaccaaccaagcca 80651
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ccaagcttacaactgaatca 237 |||||||||||||||||||| Sbjct: 2462233 ccaagcttacaactgaatca 2462252
>gb|AC018437.10| Homo sapiens chromosome 8, clone RP11-77B22, complete sequence Length = 192586 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 atattatacagtacaatatacaaa 35 ||||||||| |||||||||||||| Sbjct: 57085 atattatactgtacaatatacaaa 57108
>emb|BX255912.10| Zebrafish DNA sequence from clone CH211-267H23, complete sequence Length = 178425 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tatacagtacaatatacaaa 35 |||||||||||||||||||| Sbjct: 58024 tatacagtacaatatacaaa 58043
>gb|AC145858.5| Pan troglodytes BAC clone RP43-6D19 from chromosome 7, complete sequence Length = 196528 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ttttttcttgctgtgactgc 394 |||||||||||||||||||| Sbjct: 144586 ttttttcttgctgtgactgc 144567
>dbj|AK046818.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830014K09 product:KIAA0416 PROTEIN homolog [Homo sapiens], full insert sequence Length = 3463 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 tgtatggtgtggaaggagac 525 |||||||||||||||||||| Sbjct: 3230 tgtatggtgtggaaggagac 3249
>dbj|AK049920.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630011A14 product:hypothetical RNI-like structure containing protein, full insert sequence Length = 3660 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 tgtatggtgtggaaggagac 525 |||||||||||||||||||| Sbjct: 3229 tgtatggtgtggaaggagac 3248
>gb|AC021079.4|AC021079 Homo sapiens chromosome 5 clone CTC-202C8, complete sequence Length = 109321 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tctctactgaattcaacatg 58 |||||||||||||||||||| Sbjct: 16531 tctctactgaattcaacatg 16512
>gb|AC108202.3| Homo sapiens BAC clone RP11-20M7 from 4, complete sequence Length = 154274 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aattcaacatgttttcatga 67 |||||||||||||||||||| Sbjct: 82183 aattcaacatgttttcatga 82202
>gb|AC019231.7| Homo sapiens BAC clone RP11-573O16 from 2, complete sequence Length = 187268 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 atatattacaagagtctaat 116 |||||||||||||||||||| Sbjct: 124825 atatattacaagagtctaat 124844
>gb|AC106901.4| Homo sapiens BAC clone RP11-1178E6 from 2, complete sequence Length = 91323 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 aattcaacatgttttcatga 67 |||||||||||||||||||| Sbjct: 53087 aattcaacatgttttcatga 53068
>ref|NM_001015654.1| Bos taurus Sp2 transcription factor (SP2), mRNA Length = 2592 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 561 ccctggcaccaaccaagcca 580
>gb|AC128737.4| Mus musculus BAC clone RP23-99A8 from chromosome unknown, complete sequence Length = 211960 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aattcaacatgttttcatga 67 |||||||||||||||||||| Sbjct: 195525 aattcaacatgttttcatga 195544
>gb|AC132343.3| Mus musculus BAC clone RP24-175J11 from chromosome unknown, complete sequence Length = 166197 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aattcaacatgttttcatga 67 |||||||||||||||||||| Sbjct: 35243 aattcaacatgttttcatga 35262
>gb|AC011421.2|AC011421 Homo sapiens chromosome 5 clone CTD-2303O5, complete sequence Length = 148142 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aattcaacatgttttcatga 67 |||||||||||||||||||| Sbjct: 35834 aattcaacatgttttcatga 35853
>emb|BX649615.6| Mouse DNA sequence from clone RP23-273I8 on chromosome X, complete sequence Length = 88938 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 aattcaacatgttttcatga 67 |||||||||||||||||||| Sbjct: 38727 aattcaacatgttttcatga 38708
>gb|AY893027.1| Synthetic construct Homo sapiens clone FLH119731.01L Sp2 transcription factor (SP2) mRNA, partial cds Length = 1821 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 456 ccctggcaccaaccaagcca 475
>gb|AY890560.1| Synthetic construct Homo sapiens clone FLH119735.01X Sp2 transcription factor (SP2) mRNA, complete cds Length = 1821 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 456 ccctggcaccaaccaagcca 475
>dbj|D28588.1|HUMKG1D Homo sapiens KIAA0048 mRNA, partial cds Length = 3288 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 790 ccctggcaccaaccaagcca 809
>gb|BC005914.1| Homo sapiens Sp2 transcription factor, mRNA (cDNA clone IMAGE:4095335), complete cds Length = 1848 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 517 ccctggcaccaaccaagcca 536
>gb|BT020830.1| Bos taurus Sp2 transcription factor (SP2), mRNA, complete cds Length = 2592 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 561 ccctggcaccaaccaagcca 580
>gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.346_K_10, complete sequence Length = 168753 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tagctggcagttgcctgtaa 285 |||||||||||||||||||| Sbjct: 16640 tagctggcagttgcctgtaa 16621
>dbj|AK122278.1| Mus musculus mRNA for mKIAA0416 protein Length = 5650 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 tgtatggtgtggaaggagac 525 |||||||||||||||||||| Sbjct: 3320 tgtatggtgtggaaggagac 3339
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ttactaatagctggcagttg 278 |||||||||||||||||||| Sbjct: 246694 ttactaatagctggcagttg 246713
>emb|BX294124.8| Mouse DNA sequence from clone RP23-80H12 on chromosome X, complete sequence Length = 181854 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 tgaatcatctctacctgtct 250 |||||||||||||||||||| Sbjct: 39221 tgaatcatctctacctgtct 39240
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ccaagcttacaactgaatca 237 |||||||||||||||||||| Sbjct: 2306214 ccaagcttacaactgaatca 2306233
>emb|AJ342600.1|HSA342600 Homo sapiens genomic sequence surrounding NotI site, clone NR1-ND12C Length = 610 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ttttttcttgctgtgactgc 394 |||||||||||||||||||| Sbjct: 605 ttttttcttgctgtgactgc 586
>gb|M97190.1|HUMSP2A Human Sp2 protein mRNA, complete cds Length = 2063 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 ccctggcaccaaccaagcca 589 |||||||||||||||||||| Sbjct: 489 ccctggcaccaaccaagcca 508 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,799,358 Number of Sequences: 3902068 Number of extensions: 5799358 Number of successful extensions: 107455 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107261 Number of HSP's gapped (non-prelim): 188 length of query: 637 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 614 effective length of database: 17,143,297,704 effective search space: 10525984790256 effective search space used: 10525984790256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)