ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63p05 |
|---|---|
| Clone Library Name | barley_pub |
>PSD13_HUMAN (Q9UNM6) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 116 bits (290), Expect = 5e-26 Identities = 60/152 (39%), Positives = 90/152 (59%) Frame = -2 Query: 584 TSVEWIYHILQAFXSGNLASYQELCKVHATALSAQXALVQKERELLEKINVLCLMEIIFS 405 T +W+ L AF SGN+ +Q L TA Q L E +LL KI +LCLME+ F+ Sbjct: 228 TDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFT 283 Query: 404 RAXQXRTIPLSTIXEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGI 225 R R + I + +++V +VE L+MK+LS L++G ID VD VH++W QPRVL + Sbjct: 284 RPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDL 343 Query: 224 DQVKSLRDRLDTWVGKVHTTLLSVEAETPDLV 129 Q+K ++DRL+ W V + + VE + D++ Sbjct: 344 QQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>PSD13_BOVIN (Q5E964) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 115 bits (289), Expect = 7e-26 Identities = 60/152 (39%), Positives = 89/152 (58%) Frame = -2 Query: 584 TSVEWIYHILQAFXSGNLASYQELCKVHATALSAQXALVQKERELLEKINVLCLMEIIFS 405 T +W+ L AF SGN+ +Q L TA Q L E +LL KI +LCLME+ F+ Sbjct: 228 TDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFT 283 Query: 404 RAXQXRTIPLSTIXEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGI 225 R R + I +++V +VE L+MK+LS L++G ID VD VH++W QPRVL + Sbjct: 284 RPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDL 343 Query: 224 DQVKSLRDRLDTWVGKVHTTLLSVEAETPDLV 129 Q+K ++DRL+ W V + + VE + D++ Sbjct: 344 QQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>PSD13_CHICK (P84169) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 114 bits (285), Expect = 2e-25 Identities = 59/152 (38%), Positives = 91/152 (59%) Frame = -2 Query: 584 TSVEWIYHILQAFXSGNLASYQELCKVHATALSAQXALVQKERELLEKINVLCLMEIIFS 405 T +W+ L AF SGN+ ++Q L +A Q L E LL+KI +LCLME+ F+ Sbjct: 228 TDRQWLIDTLYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFT 283 Query: 404 RAXQXRTIPLSTIXEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGI 225 R R + I + +++V +VE L+MK+LS L++G ID VD VH++W QPRVL + Sbjct: 284 RPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDL 343 Query: 224 DQVKSLRDRLDTWVGKVHTTLLSVEAETPDLV 129 Q+K ++DRL+ W V + + VE + D++ Sbjct: 344 QQIKGMKDRLEFWCTDVRSMEMLVEHQAHDIL 375
>PSD13_MOUSE (Q9WVJ2) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 109 bits (273), Expect = 5e-24 Identities = 58/152 (38%), Positives = 86/152 (56%) Frame = -2 Query: 584 TSVEWIYHILQAFXSGNLASYQELCKVHATALSAQXALVQKERELLEKINVLCLMEIIFS 405 T +W+ L AF SG + +Q L A Q L E +LL KI +LCLME+ F+ Sbjct: 228 TDRQWLIDTLYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFT 283 Query: 404 RAXQXRTIPLSTIXEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGI 225 R R + I + +++V VE L+MK+LS L+ G ID VD VH++W QPRVL + Sbjct: 284 RPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDL 343 Query: 224 DQVKSLRDRLDTWVGKVHTTLLSVEAETPDLV 129 Q+K ++DRL+ W V + + VE + D++ Sbjct: 344 QQIKGMKDRLELWCTDVKSMEMLVEHQAQDIL 375
>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome| non-ATPase subunit 7) Length = 393 Score = 82.4 bits (202), Expect = 9e-16 Identities = 45/146 (30%), Positives = 81/146 (55%) Frame = -2 Query: 584 TSVEWIYHILQAFXSGNLASYQELCKVHATALSAQXALVQKERELLEKINVLCLMEIIFS 405 ++ +W++ +L A G+ + L KV + + L Q E L +KI ++ L+E +F Sbjct: 246 SNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPI---LAQHESFLRQKICLMTLIETVFV 302 Query: 404 RAXQXRTIPLSTIXEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGI 225 + R + I + T L ++VE+L+M+++S L++G ID V+ V +SW QPR++ Sbjct: 303 K--NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISG 360 Query: 224 DQVKSLRDRLDTWVGKVHTTLLSVEA 147 DQ+ ++DRL W +V +EA Sbjct: 361 DQITKMKDRLVEWNDQVEKLGKKMEA 386
>RPN9_SCHPO (Q9US13) Probable 26S proteasome regulatory subunit rpn9| Length = 381 Score = 75.1 bits (183), Expect = 1e-13 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 1/135 (0%) Frame = -2 Query: 587 GTSVEWIYHILQAFXSGNLASYQELCKVHATALSAQXALVQKERELL-EKINVLCLMEII 411 GT EW++ ++ A G+L ++ L + L+Q LL +KI ++ L+E++ Sbjct: 232 GTQHEWLHDLVIAMNVGDLPLFERLM-----GQINKMPLLQSSVALLGQKIRLMALIELV 286 Query: 410 FSRAXQXRTIPLSTIXEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVL 231 F RT+ TI TR+ +VE L+M++LS LI G+ID V V +S Q R+L Sbjct: 287 FQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRIL 346 Query: 230 GIDQVKSLRDRLDTW 186 Q+ S+ RL W Sbjct: 347 NHSQIASMESRLREW 361
>CSN7A_SCHPO (Q9UUJ7) COP9 signalosome complex subunit 7A| Length = 205 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/71 (29%), Positives = 39/71 (54%) Frame = -2 Query: 335 VEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGIDQVKSLRDRLDTWVGKVHTTLLS 156 VEY +M+++ ++ G I+ T+HVSWA R L ++ ++ LD ++ + L Sbjct: 104 VEYYIMQAMMNQILVGKINAKTQTLHVSWALERFLDSKRIDEMKYSLDRFIERCSNILFQ 163 Query: 155 VEAETPDLVAS 123 ++A TP + S Sbjct: 164 LDAGTPSVSKS 174
>Y309_MYCGE (P47551) Hypothetical lipoprotein MG309 precursor| Length = 1225 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Frame = +1 Query: 112 KEHQEATRSGVSASTDSKVVCTFPTQVSSRSRRDFTWSIPRT----LGCAHETWTVPSTP 279 K+ +S S+ V+ V+S++ +DFT + G + WT TP Sbjct: 865 KDRNNTASQAMSVSSSKSVLVKMANNVASQTNQDFTKQEQQNPNYVFGSSAYNWTNNKTP 924 Query: 280 SIMPSIR*AERLFISRYSTSSTESL 354 ++ + L+ ++ + SS+ SL Sbjct: 925 TVNSAANDISSLYYTKNNGSSSTSL 949
>CPT2_MACFA (Q60HG9) Carnitine O-palmitoyltransferase II, mitochondrial| precursor (EC 2.3.1.21) (CPT II) Length = 658 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +2 Query: 173 APSRPRCPAGHAGTSPGQFQGPSVAPTKHGQSRRP 277 APSRP AG+ PGQ+ S+ PT H Q P Sbjct: 20 APSRPLS----AGSGPGQYLQRSIVPTMHYQDSLP 50
>CPT2_HUMAN (P23786) Carnitine O-palmitoyltransferase II, mitochondrial| precursor (EC 2.3.1.21) (CPT II) Length = 658 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +2 Query: 173 APSRPRCPAGHAGTSPGQFQGPSVAPTKHGQSRRP 277 APSRP AG+ PGQ+ S+ PT H Q P Sbjct: 20 APSRPLS----AGSGPGQYLQRSIVPTMHYQDSLP 50
>HSP97_STRFN (Q94738) 97 kDa heat shock protein (Heat shock protein 110)| Length = 886 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = -2 Query: 521 QELCKVHATALSAQXALVQKERELLEKINVLCLMEIIFSRAXQXRTIPLSTIXEQTRLSV 342 ++L +AT +S + +R++ KI+ E + + + +PL ++ EQT+L Sbjct: 274 KKLMSANATVISMNIECIMNDRDVSGKIS-RADFEALAAELLKRVEVPLKSVLEQTKLKP 332 Query: 341 EDV 333 ED+ Sbjct: 333 EDI 335
>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2| precursor Length = 503 Score = 30.4 bits (67), Expect = 4.0 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 4/102 (3%) Frame = +1 Query: 58 SNSTLALCKVTDTVQQGTKEHQEATRSGVSASTDSKVVCTFPTQVSSRSRRDF----TWS 225 S+ST K + + T AT S S+ST S + T SS S T S Sbjct: 138 SSSTSVSSKTSTKLDTKTSTSSSATHSSSSSSTTSTTTSSSETTTSSSSSSSSSSTSTTS 197 Query: 226 IPRTLGCAHETWTVPSTPSIMPSIR*AERLFISRYSTSSTES 351 T T + PST S S + ++ ++SST S Sbjct: 198 TTSTTSSTTSTSSSPSTTSSSTSASSSSETSSTQATSSSTTS 239
>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing| protein 6) (Fragment) Length = 608 Score = 30.0 bits (66), Expect = 5.2 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = +2 Query: 167 WCAPSRPRCPAG---HAGT-SPGQFQGPSVAPT--KHGQSRRPHQLCLQ 295 +CA +P CPAG GT PG+ G + PT + G RPH L+ Sbjct: 21 FCAVVKPTCPAGKLPERGTKEPGRGSGQAQQPTAVESGAQVRPHSRALR 69
>YDH2_SCHPO (Q92347) Hypothetical protein C6G9.02c in chromosome I| Length = 655 Score = 30.0 bits (66), Expect = 5.2 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = -2 Query: 464 KERELLEKINVLCLMEIIFSRAXQXRTIPLSTIXEQTRLSVEDVEYLLMKSLSAHLIEGI 285 KER+L+ + L+E + Q + L ++ + LS E + ++++S+HLIEGI Sbjct: 456 KERKLVNNLLGAQLLEEMLHCEKQHIQLLLDSVLD---LSKEQILEYCLETVSSHLIEGI 512 Query: 284 ID 279 +D Sbjct: 513 LD 514
>HSP97_STRPU (Q06068) 97 kDa heat shock protein (Egg sperm receptor)| Length = 889 Score = 30.0 bits (66), Expect = 5.2 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = -2 Query: 521 QELCKVHATALSAQXALVQKERELLEKINVLCLMEIIFSRAXQXRTIPLSTIXEQTRLSV 342 ++L +AT +S + +R++ KI+ E + + + +PL ++ EQT+L Sbjct: 274 KKLMSANATLISMNIECIMNDRDVSGKIS-RADFEALAAELLKRVEVPLKSVLEQTKLKP 332 Query: 341 EDV 333 ED+ Sbjct: 333 EDI 335
>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1| Length = 1319 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +2 Query: 170 CAPSRPRCPAGHAGTSPGQFQ-GPSVAPTKHGQSRRP-HQL 286 C P+ PR G AGT G Q G + P++H Q P H+L Sbjct: 373 CPPALPRPQQGEAGTPSGGLQDGGPMLPSQHAQFEYPIHRL 413
>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 475 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +3 Query: 165 SGVHLPDPGVQPVTQGLH 218 SGVH P PGV P T G+H Sbjct: 310 SGVHPPAPGVHPPTPGVH 327
>ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 827 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Frame = -2 Query: 380 PLSTIXEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHV---SWAQPRVLGIDQVKS 210 P +T+ + ++ +++E ++ K L I GV+G VH+ SW + +V D VK Sbjct: 551 PWATVANEFKVD-DEIEGIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKE 609 Query: 209 LRDRLDTWVGKVHTTLLSVEAETPDLVAS 123 R+++ + +H ++ LVA+ Sbjct: 610 -REKIKVRITDLHPEDRKLKLGIKQLVAN 637 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,273,849 Number of Sequences: 219361 Number of extensions: 1849952 Number of successful extensions: 4826 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4631 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4820 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
