ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 149 4e-36
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 102 5e-22
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 98 1e-20
4BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (E... 29 5.8
5SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 29 5.8
6PUR1_SYNY3 (Q55621) Amidophosphoribosyltransferase precursor (EC... 28 9.9

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score =  149 bits (375), Expect = 4e-36
 Identities = 74/83 (89%), Positives = 78/83 (93%), Gaps = 2/83 (2%)
 Frame = -3

Query: 436 AYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGKL 257
           AYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF  ENVESGHPLVKEGKL
Sbjct: 313 AYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVESGHPLVKEGKL 370

Query: 256 ANLLAWRAEEDSLEE--GAVLCE 194
           ANLLAWRAEE+SLEE  GA+LCE
Sbjct: 371 ANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score =  102 bits (253), Expect = 5e-22
 Identities = 51/75 (68%), Positives = 59/75 (78%)
 Frame = -3

Query: 436 AYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGKL 257
           AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ +  P VKEGKL
Sbjct: 320 AYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKEGKL 378

Query: 256 ANLLAWRAEEDSLEE 212
            NLL W   ED+LEE
Sbjct: 379 GNLLPW--GEDALEE 391



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 49/77 (63%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = -3

Query: 433 YDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG-HPLVKEGKL 257
           YDCNN+VEQELP GG+L+YQSF A E+    A SP+SVFHCF+GENVES   P+ K+ KL
Sbjct: 321 YDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESAPPPMKKDYKL 378

Query: 256 ANLLAWRAEEDSLEEGA 206
           ANLL W  E D++EE A
Sbjct: 379 ANLLCWEEEADAMEEKA 395



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>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)|
           (BSU1-like protein 3)
          Length = 715

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
 Frame = +2

Query: 191 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 355
           S A H A        PP    G+  F D+R   L   A +AV  G     P  P G  +L
Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360

Query: 356 FIX--GKALVDEDAPAGELLLHDVV 424
            +     A+ +   PAG  L H  V
Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV 385



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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 343 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 203
           +AGSP S            G P+    +  N+ +W A +DS+ EGAV
Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297



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>PUR1_SYNY3 (Q55621) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)|
           (Glutamine phosphoribosylpyrophosphate amidotransferase)
           (ATASE) (GPATase)
          Length = 495

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = -3

Query: 355 EVAVSAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSL----EEGAVLCE** 188
           EV +   SP     CF G + +S   L+        +A + E DSL    +EG +LC   
Sbjct: 402 EVHMRISSPPVTHPCFYGIDTDSQDQLIAARLTVAEIAEQIEVDSLAYLSQEGMLLCT-G 460

Query: 187 DDFCCRCSVC 158
           +D    CS C
Sbjct: 461 EDISHFCSAC 470


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,640,369
Number of Sequences: 219361
Number of extensions: 870205
Number of successful extensions: 2628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2624
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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