ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63p03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Trit... 517 e-144
2gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine de... 468 e-129
3ref|XM_473046.1| Oryza sativa (japonica cultivar-group), predic... 70 7e-09
4emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 70 7e-09
5emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine de... 70 7e-09
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
7gb|AY966487.1| Oryza sativa (indica cultivar-group) S-adenosylme... 70 7e-09
8gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarbo... 70 7e-09
9dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
10dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
11dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
12dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
13dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
14emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 70 7e-09
15emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 62 2e-06
16gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence 50 0.006
17gb|BT016840.1| Zea mays clone Contig673 mRNA sequence 50 0.006
18emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine deca... 50 0.006
19gb|AY103590.1| Zea mays PCO098412 mRNA sequence 50 0.006
20emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-gluc... 48 0.024
21dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
22dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
23dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 g... 46 0.095
24dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.095
25dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.095
26dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.095
27dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.095
28ref|XM_960781.1| Encephalitozoon cuniculi GB-M1 hypothetical pro... 44 0.38
29emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephal... 44 0.38
30gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, compl... 42 1.5
31emb|AL591979.1| Listeria monocytogenes strain EGD, complete geno... 42 1.5
32dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, comp... 42 1.5
33ref|XM_468482.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
34emb|AL121912.18|HSJ1004I9 Human DNA sequence from clone RP5-1004... 40 5.9
35emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 40 5.9
36dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
37gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 5.9
38dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
39emb|CR352306.11| Zebrafish DNA sequence from clone CH211-161N3 i... 40 5.9
40emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, ... 40 5.9
41emb|AL929427.5| Mouse DNA sequence from clone RP23-292E15 on chr... 40 5.9
42emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on ch... 40 5.9 
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for
            S-adenosylmethionine decarboxylase
          Length = 1893

 Score =  517 bits (261), Expect = e-144
 Identities = 403/447 (90%), Gaps = 19/447 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    cttatttataagttgtgacagattttgctccaaacagtacgctcattgtggcagacgcag 60
            ||||||||||||||||| ||  | || |||||||||||| ||||||||||||||||||||
Sbjct: 1883 cttatttataagttgtgccaactctt-ctccaaacagtatgctcattgtggcagacgcag 1825

                                                                        
Query: 61   caaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcaca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 caaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcaca 1765

                                                                        
Query: 121  gtaaccaaaacgacaaacg---gaagtcagaacgaattccacagactgaacagcgacagc 177
            |||||| |||||||  |||     |||||||||||||| ||||||| |||||||||||||
Sbjct: 1764 gtaacc-aaacgacgcacgacaacagtcagaacgaattacacagacggaacagcgacagc 1706

                                                                        
Query: 178  aaaaatcatcttatcactcgcacagcaccgc------gccctcctccagagaatcctcct 231
              ||||||||||||||||||||||||| |||      ||||||||| ||||| |||||||
Sbjct: 1705 --aaatcatcttatcactcgcacagcaacgcgcctgtgccctcctcgagagactcctcct 1648

                                                                        
Query: 232  ccgcccgccatgcgagcaggttggcaagcttgccttccttgaccagagggtggccgctct 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 ccgcccgccatgcgagcaggttggcaagcttgccttccttgaccagagggtggccgctct 1588

                                                                        
Query: 292  ccacattctcgccctcgaagcagtggaagacggacctgggcgacccggcggagacagcaa 351
            |||||||      |||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 1587 ccacatt------ctcgaagcagtggaagacagacctgggcgacccggcagagacagcaa 1534

                                                                        
Query: 352  cctcttcattngcggtaaagctctggtagatgaggacgcccccgcaggggagctcctgct 411
             |||||| || |||| |||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 1533 gctcttcgttcgcggcaaagctctggtagatgaggacgccaccgcatggcagctcctgct 1474

                                       
Query: 412  ccacgatgttgttgcagtcgtatgcct 438
            |||| | ||||||||||||||||||||
Sbjct: 1473 ccacaacgttgttgcagtcgtatgcct 1447
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>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA,
            complete cds
          Length = 1386

 Score =  468 bits (236), Expect = e-129
 Identities = 345/376 (91%), Gaps = 8/376 (2%)
 Strand = Plus / Minus

                                                                        
Query: 64   accacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcacagta 123
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1378 accacctagagctaatagtttattcagag-agcaatagcctggccggctgcttcacagta 1320

                                                                        
Query: 124  accaaaacgacaaacgga-agtcagaacgaattccacagactgaacagcgacagcaaaaa 182
            |||||| |||||||| || ||||||||| |||||||||||  ||| ||||||||||||  
Sbjct: 1319 accaaa-cgacaaactgacagtcagaacaaattccacagatggaatagcgacagcaaa-- 1263

                                                                        
Query: 183  tcatcttatcactcgcacagcaccgcgccctcctccagagaatcctcctccgcccgccat 242
            |||| |  |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1262 tcatgtcttcactcgcacagcaccgcgccctcttccagagaatcctcctccgcccgccat 1203

                                                                        
Query: 243  gcgagcaggttggcaagcttgccttccttgaccagagggtggccgctctccacattctcg 302
            ||||| |||||||| |||||||||||||||||||||||||||| |   | |||| |||||
Sbjct: 1202 gcgaggaggttggcgagcttgccttccttgaccagagggtggctg---tgcacactctcg 1146

                                                                        
Query: 303  ccctcgaagcagtggaagacggacctgggcgacccggcggagacagcaacctcttcattn 362
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || 
Sbjct: 1145 gcctcgaagcagtggaagacggacctgggcgacccggcagagacagcaacctcttcgttc 1086

                                                                        
Query: 363  gcggtaaagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttg 422
             |||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||
Sbjct: 1085 acggtaaagctctggtagatgaggacgcctccacaggggagctcctgctccacaacgttg 1026

                            
Query: 423  ttgcagtcgtatgcct 438
            ||||||||||||||||
Sbjct: 1025 ttgcagtcgtatgcct 1010
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>ref|XM_473046.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1197

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 369  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1025 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 967
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 369   aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
             ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 13505 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 13447



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 41    gctcattgtggcagacgcagcaaaccacctagagct 76
             |||||||||||||||||||||  |||||||||||||
Sbjct: 13891 gctcattgtggcagacgcagctgaccacctagagct 13856



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 97    aatagcctggccggctgcttcacag 121
             ||||||||||| |||||||||||||
Sbjct: 13782 aatagcctggctggctgcttcacag 13758
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>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase
          Length = 2036

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 369  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1564 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1506



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 41   gctcattgtggcagacgcagcaaaccacctagagct 76
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1950 gctcattgtggcagacgcagctgaccacctagagct 1915



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 97   aatagcctggccggctgcttcacag 121
            ||||||||||| |||||||||||||
Sbjct: 1841 aatagcctggctggctgcttcacag 1817
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 369      aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
                ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 24892920 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 24892862



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 41       gctcattgtggcagacgcagcaaaccacctagagct 76
                |||||||||||||||||||||  |||||||||||||
Sbjct: 24893306 gctcattgtggcagacgcagctgaccacctagagct 24893271



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 97       aatagcctggccggctgcttcacag 121
                ||||||||||| |||||||||||||
Sbjct: 24893197 aatagcctggctggctgcttcacag 24893173
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>gb|AY966487.1| Oryza sativa (indica cultivar-group) S-adenosylmethionine
            decarboxylase mRNA, complete cds
          Length = 1197

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 369  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1025 aagctctggtagatgaggaggccgccacagggcagctcctgctctaccatgttgttgca 967
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>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds
          Length = 1560

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 369  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1115 aagctctggtagatgaggaggccgccacagggcagctcctgctctaccatgttgttgca 1057



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 41   gctcattgtggcagacgcagcaaaccacctagagct 76
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1501 gctcattgtggcagacgcagctgaccacctagagct 1466



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 97   aatagcctggccggctgcttcacag 121
            ||||||||||| |||||||||||||
Sbjct: 1392 aatagcctggctggctgcttcacag 1368
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>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full
            insert sequence
          Length = 2063

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 369  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 41   gctcattgtggcagacgcagcaaaccacctagagct 76
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 97   aatagcctggccggctgcttcacag 121
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full
            insert sequence
          Length = 2059

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 369  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 41   gctcattgtggcagacgcagcaaaccacctagagct 76
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 97   aatagcctggccggctgcttcacag 121
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full
            insert sequence
          Length = 2711

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 369  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 41   gctcattgtggcagacgcagcaaaccacctagagct 76
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 97   aatagcctggccggctgcttcacag 121
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full
            insert sequence
          Length = 2063

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 369  aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
            ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 1608 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 1550



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 41   gctcattgtggcagacgcagcaaaccacctagagct 76
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 97   aatagcctggccggctgcttcacag 121
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full
           insert sequence
          Length = 1217

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 369 aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
           ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 766 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 708



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 41   gctcattgtggcagacgcagcaaaccacctagagct 76
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1152 gctcattgtggcagacgcagctgaccacctagagct 1117



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 97   aatagcctggccggctgcttcacag 121
            ||||||||||| |||||||||||||
Sbjct: 1043 aatagcctggctggctgcttcacag 1019
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                         
Query: 369    aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
              ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 154636 aagctctggtagatgaggaggccaccacagggcagctcctgctctaccatgttgttgca 154578



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 41     gctcattgtggcagacgcagcaaaccacctagagct 76
              |||||||||||||||||||||  |||||||||||||
Sbjct: 155022 gctcattgtggcagacgcagctgaccacctagagct 154987



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 97     aatagcctggccggctgcttcacag 121
              ||||||||||| |||||||||||||
Sbjct: 154913 aatagcctggctggctgcttcacag 154889
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                        
Query: 369   aagctctggtagatgaggacgcccccgcaggggagctcctgctccacgatgttgttgca 427
             ||||||||||||||||||| ||| || ||||| ||||||||||| || |||||||||||
Sbjct: 13533 aagctctggtagatgagga-gccgccacagggcagctcctgctctaccatgttgttgca 13476



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 41    gctcattgtggcagacgcagcaaaccacctagagct 76
             |||||||||||||||||||||  |||||||||||||
Sbjct: 13919 gctcattgtggcagacgcagctgaccacctagagct 13884



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 97    aatagcctggccggctgcttcacag 121
             ||||||||||| |||||||||||||
Sbjct: 13810 aatagcctggctggctgcttcacag 13786
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>gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence
          Length = 2057

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 402  agctcctgctccacgatgttgttgcagtc 430
            |||||||||||||| ||||||||||||||
Sbjct: 1538 agctcctgctccaccatgttgttgcagtc 1510



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 288  ctctccacattctcgccctcgaagcagtggaa 319
            |||||||| |||||||| || |||||||||||
Sbjct: 1646 ctctccacgttctcgccgtcaaagcagtggaa 1615
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>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence
          Length = 1866

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 402 agctcctgctccacgatgttgttgcagtc 430
           |||||||||||||| ||||||||||||||
Sbjct: 540 agctcctgctccaccatgttgttgcagtc 568



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 41  gctcattgtggcagacgcagcaaaccacctagagct 76
           ||||||||||| |||||||||  |||||||||||||
Sbjct: 109 gctcattgtggtagacgcagctgaccacctagagct 144



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 288 ctctccacattctcgccctcgaagcagtggaa 319
           |||||||| |||||||| || |||||||||||
Sbjct: 432 ctctccacgttctcgccgtcaaagcagtggaa 463
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>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase
          Length = 1873

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 402  agctcctgctccacgatgttgttgcagtc 430
            |||||||||||||| ||||||||||||||
Sbjct: 1358 agctcctgctccaccatgttgttgcagtc 1330



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 41   gctcattgtggcagacgcagcaaaccacctagagct 76
            ||||||||||| |||||||||  |||||||||||||
Sbjct: 1789 gctcattgtggtagacgcagctgaccacctagagct 1754



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 288  ctctccacattctcgccctcgaagcagtggaa 319
            |||||||| |||||||| || |||||||||||
Sbjct: 1466 ctctccacgttctcgccgtcaaagcagtggaa 1435
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>gb|AY103590.1| Zea mays PCO098412 mRNA sequence
          Length = 2400

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 402  agctcctgctccacgatgttgttgcagtc 430
            |||||||||||||| ||||||||||||||
Sbjct: 1607 agctcctgctccaccatgttgttgcagtc 1579



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 41   gctcattgtggcagacgcagcaaaccacctagagct 76
            ||||||||||| |||||||||  |||||||||||||
Sbjct: 2038 gctcattgtggtagacgcagctgaccacctagagct 2003



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 288  ctctccacattctcgccctcgaagcagtggaa 319
            |||||||| |||||||| || |||||||||||
Sbjct: 1715 ctctccacgttctcgccgtcaaagcagtggaa 1684
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>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene)
          Length = 1562

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 368 aaagctctggtagatgaggacgcccccgcaggggagctcctgctccac 415
           |||||||||||| ||||| |  || |||||||| ||||||||||||||
Sbjct: 111 aaagctctggtaaatgagaagaccaccgcagggcagctcctgctccac 64
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 49       tggcagacgcagcaaaccacctagagc 75
                ||||||||||||||||||| |||||||
Sbjct: 15331175 tggcagacgcagcaaaccatctagagc 15331201
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0418B08
          Length = 165909

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 49     tggcagacgcagcaaaccacctagagc 75
              ||||||||||||||||||| |||||||
Sbjct: 110364 tggcagacgcagcaaaccatctagagc 110390
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>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1  gene for
            S-adenosylmethionine decarboxylase, complete cds
          Length = 2952

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 49   tggcagacgcagcaaaccacctagagc 75
            ||||||||||||||||||| |||||||
Sbjct: 2817 tggcagacgcagcaaaccatctagagc 2791
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>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full
            insert sequence
          Length = 2047

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 49   tggcagacgcagcaaaccacctagagc 75
            ||||||||||||||||||| |||||||
Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
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>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full
            insert sequence
          Length = 2002

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 49   tggcagacgcagcaaaccacctagagc 75
            ||||||||||||||||||| |||||||
Sbjct: 1918 tggcagacgcagcaaaccatctagagc 1892
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>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full
            insert sequence
          Length = 2546

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 49   tggcagacgcagcaaaccacctagagc 75
            ||||||||||||||||||| |||||||
Sbjct: 2443 tggcagacgcagcaaaccatctagagc 2417
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>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full
            insert sequence
          Length = 2034

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 49   tggcagacgcagcaaaccacctagagc 75
            ||||||||||||||||||| |||||||
Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
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>ref|XM_960781.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_0400)
           partial mRNA
          Length = 1224

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 411 tccacgatgttgttgcagtcgt 432
           ||||||||||||||||||||||
Sbjct: 88  tccacgatgttgttgcagtcgt 67
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>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 209982

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 411   tccacgatgttgttgcagtcgt 432
             ||||||||||||||||||||||
Sbjct: 55310 tccacgatgttgttgcagtcgt 55331
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>gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, complete sequence
          Length = 191540

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 262   tgccttccttgaccagagggt 282
             |||||||||||||||||||||
Sbjct: 51033 tgccttccttgaccagagggt 51053
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>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12
          Length = 240050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 216   tccagagaatcctcctccgcc 236
             |||||||||||||||||||||
Sbjct: 94892 tccagagaatcctcctccgcc 94912
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>dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, complete cds
          Length = 8881

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 216  tccagagaatcctcctccgcc 236
            |||||||||||||||||||||
Sbjct: 4201 tccagagaatcctcctccgcc 4181
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>ref|XM_468482.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1497

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  agctcctgctccacgatgtt 421
            ||||||||||||||||||||
Sbjct: 1430 agctcctgctccacgatgtt 1411
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>emb|AL121912.18|HSJ1004I9 Human DNA sequence from clone RP5-1004I9 on chromosome 20 Contains the
             3' end of a novel gene (LOC284788), complete sequence
          Length = 117757

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   cacagactgaacagcgacag 176
             ||||||||||||||||||||
Sbjct: 58331 cacagactgaacagcgacag 58350
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    ctgggcgacccggcggagac 346
              ||||||||||||||||||||
Sbjct: 276909 ctgggcgacccggcggagac 276890
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 402      agctcctgctccacgatgtt 421
                ||||||||||||||||||||
Sbjct: 35459486 agctcctgctccacgatgtt 35459505
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    gagcaggttggcaagcttgc 264
              ||||||||||||||||||||
Sbjct: 494503 gagcaggttggcaagcttgc 494484
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>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1063_D06
          Length = 102439

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   agctcctgctccacgatgtt 421
             ||||||||||||||||||||
Sbjct: 71007 agctcctgctccacgatgtt 71026
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>emb|CR352306.11| Zebrafish DNA sequence from clone CH211-161N3 in linkage group 4,
             complete sequence
          Length = 97766

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    acagattttgctccaaacag 37
             ||||||||||||||||||||
Sbjct: 34246 acagattttgctccaaacag 34265
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>emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, exons 1-17
          Length = 24990

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   tgcttcacagtaaccaaaac 131
             ||||||||||||||||||||
Sbjct: 19045 tgcttcacagtaaccaaaac 19064
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>emb|AL929427.5| Mouse DNA sequence from clone RP23-292E15 on chromosome 1, complete
            sequence
          Length = 3999

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  cacagactgaacagcgacag 176
            ||||||||||||||||||||
Sbjct: 3172 cacagactgaacagcgacag 3153
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>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete
            sequence
          Length = 182054

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  cacagactgaacagcgacag 176
            ||||||||||||||||||||
Sbjct: 1173 cacagactgaacagcgacag 1154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,355,051
Number of Sequences: 3902068
Number of extensions: 3355051
Number of successful extensions: 84344
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84184
Number of HSP's gapped (non-prelim): 153
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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