ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63p02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 521 bits (263), Expect = e-145 Identities = 298/303 (98%), Gaps = 5/303 (1%) Strand = Plus / Minus Query: 1 atttagagatatat-aacaaaacatgcccagcaatcgcttggatgcgatgcggacttag- 58 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1683 atttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagt 1624 Query: 59 gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1623 gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt 1564 Query: 119 -cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1563 tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 1504 Query: 178 a-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtggg 236 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1503 atcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtggg 1444 Query: 237 tg-tgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagc 295 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1443 tgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagc 1384 Query: 296 atc 298 ||| Sbjct: 1383 atc 1381
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 404 bits (204), Expect = e-110 Identities = 211/212 (99%), Gaps = 1/212 (0%) Strand = Plus / Minus Query: 1 atttagagatatat-aacaaaacatgcccagcaatcgcttggatgcgatgcggacttagg 59 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7734 atttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagg 7675 Query: 60 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7674 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtc 7615 Query: 120 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7614 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcac 7555 Query: 180 gggcaaagtaccttgctgtgctcctttacctc 211 |||||||||||||||||||||||||||||||| Sbjct: 7554 gggcaaagtaccttgctgtgctcctttacctc 7523 Score = 182 bits (92), Expect = 4e-43 Identities = 92/92 (100%) Strand = Plus / Minus Query: 207 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 267 gaaccagtcttcatcgcatcctggttagcatc 298 |||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatc 7264
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 400 bits (202), Expect = e-108 Identities = 209/210 (99%), Gaps = 1/210 (0%) Strand = Plus / Minus Query: 1 atttagagatatat-aacaaaacatgcccagcaatcgcttggatgcgatgcggacttagg 59 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1374 atttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagg 1315 Query: 60 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1314 taggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtc 1255 Query: 120 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1254 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcac 1195 Query: 180 gggcaaagtaccttgctgtgctcctttacc 209 |||||||||||||||||||||||||||||| Sbjct: 1194 gggcaaagtaccttgctgtgctcctttacc 1165 Score = 83.8 bits (42), Expect = 3e-13 Identities = 42/42 (100%) Strand = Plus / Minus Query: 257 accgtagaaggaaccagtcttcatcgcatcctggttagcatc 298 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatc 1126
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 394 bits (199), Expect = e-107 Identities = 270/291 (92%), Gaps = 7/291 (2%) Strand = Plus / Minus Query: 14 taacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaa 67 ||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| Sbjct: 740 taacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggataaa 681 Query: 68 acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcc 127 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 680 acatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcc 622 Query: 128 ttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaag 187 | |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||||||| Sbjct: 621 tcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaaag 562 Query: 188 taccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggag 247 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 taccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtatggag 502 Query: 248 aattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatc 298 ||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 501 aatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatc 451
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 394 bits (199), Expect = e-107 Identities = 270/291 (92%), Gaps = 7/291 (2%) Strand = Plus / Minus Query: 14 taacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaa 67 ||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| Sbjct: 1590 taacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggataaa 1531 Query: 68 acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcc 127 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1530 acatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcc 1472 Query: 128 ttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaag 187 | |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||||||| Sbjct: 1471 tcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaaag 1412 Query: 188 taccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggag 247 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1411 taccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtatggag 1352 Query: 248 aattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatc 298 ||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1351 aatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatc 1301
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 287 bits (145), Expect = 1e-74 Identities = 252/284 (88%), Gaps = 9/284 (3%) Strand = Plus / Minus Query: 22 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 75 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 76 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 134 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 135 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 194 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 195 ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 254 |||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttc 1356 Query: 255 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatc 298 |||||||||||||||||||||||||| ||||||| ||| ||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatc 1312
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 176 bits (89), Expect = 3e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 81 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 140 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 141 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 200 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 201 tcctttacc 209 ||||||||| Sbjct: 1369 tcctttacc 1361 Score = 60.0 bits (30), Expect = 4e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 257 accgtagaaggaaccagtcttcatcgcatcctggttagcatc 298 |||||||||||||||||||||||| ||||||| ||| ||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatc 1322
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 9e-29 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||||| Sbjct: 1310 aaccgtagaaggaaccagtcttcat 1286
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 9e-29 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||||| Sbjct: 1348 aaccgtagaaggaaccagtcttcat 1324
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 9e-29 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||||| Sbjct: 1347 aaccgtagaaggaaccagtcttcat 1323
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 9e-29 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||||| Sbjct: 1131 aaccgtagaaggaaccagtcttcat 1107
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 9e-29 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||||| Sbjct: 1352 aaccgtagaaggaaccagtcttcat 1328
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 4e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 56.0 bits (28), Expect = 7e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 253 tctaaccgtagaaggaaccagtcttcat 280 |||||||||||||||||||||||||||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcat 108333 Score = 54.0 bits (27), Expect = 3e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 108 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 167 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 168 accttccggcacggg 182 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 4e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 56.0 bits (28), Expect = 7e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 253 tctaaccgtagaaggaaccagtcttcat 280 |||||||||||||||||||||||||||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcat 30210 Score = 54.0 bits (27), Expect = 3e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 108 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 167 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 168 accttccggcacggg 182 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 4e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||||| Sbjct: 1316 aaccgtagaaggaaccagtcttcat 1292
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 4e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Minus Query: 258 ccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||| Sbjct: 1309 ccgtagaaggaaccagtcttcat 1287
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 4e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 56.0 bits (28), Expect = 7e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 253 tctaaccgtagaaggaaccagtcttcat 280 |||||||||||||||||||||||||||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcat 28303472 Score = 54.0 bits (27), Expect = 3e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 108 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 167 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 168 accttccggcacggg 182 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 4e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 56.0 bits (28), Expect = 7e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 253 tctaaccgtagaaggaaccagtcttcat 280 |||||||||||||||||||||||||||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcat 28285921 Score = 54.0 bits (27), Expect = 3e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 108 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 167 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 168 accttccggcacggg 182 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 4e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Minus Query: 258 ccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||| Sbjct: 1344 ccgtagaaggaaccagtcttcat 1322
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 1e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 96 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 155 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 156 ttggtcggtgcaaccttccggcacgggca 184 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 119 bits (60), Expect = 5e-24 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||||| Sbjct: 1359 aaccgtagaaggaaccagtcttcat 1335
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 119 bits (60), Expect = 5e-24 Identities = 63/64 (98%) Strand = Plus / Minus Query: 235 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 294 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 295 catc 298 |||| Sbjct: 248 catc 245
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 1e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 100 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 159 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 160 tcggtgcaaccttc 173 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 100 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 159 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 160 tcggtgcaaccttc 173 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 100 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 159 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 160 tcggtgcaaccttc 173 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 100 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 159 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 160 tcggtgcaaccttc 173 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcat 280 ||||||||||||||||||||||||| Sbjct: 565 aaccgtagaaggaaccagtcttcat 541
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 aaacatcagatattaaaagtg 86 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 atgcagcaagagatggtgggt 237 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 aaacatcagatattaaaagtg 86 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 aaacatcagatattaaaagtg 86 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tcagatattaaaagtggcat 90 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tcagatattaaaagtggcat 90 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tcagatattaaaagtggcat 90 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 99 ggtgtaaaggcagctgccgtcgtcgctc 126 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 aaacatgcccagcaatcgcttgga 42 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tggcatgcttaaaaggtgta 104 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cttgctgtgctcctttacctcctc 214 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 atcagatattaaaagtggcatgct 93 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,365,446 Number of Sequences: 3902068 Number of extensions: 2365446 Number of successful extensions: 45505 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45314 Number of HSP's gapped (non-prelim): 158 length of query: 298 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 276 effective length of database: 17,147,199,772 effective search space: 4732627137072 effective search space used: 4732627137072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
