ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63o24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482488.1| Oryza sativa (japonica cultivar-group), mRNA 70 6e-09
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
3dbj|AP005734.4| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
4dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
5dbj|AK066491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
6gb|AY105857.1| Zea mays PCO097564 mRNA sequence 48 0.023
7emb|Z81479.1|CEC34F6 Caenorhabditis elegans Cosmid C34F6, comple... 42 1.4
8gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 5.5
9gb|AC142334.1| Pan troglodytes BAC clone RP43-34J11 from 7, comp... 40 5.5
10gb|AC084250.6| Homo sapiens chromosome 8, clone RP11-89F14, comp... 40 5.5
11gb|AC020783.8| Homo sapiens chromosome 8, clone RP11-16M2, compl... 40 5.5
12gb|AC154308.3| Mus musculus BAC clone RP23-370E2 from chromosome... 40 5.5
13gb|AC097517.3| Homo sapiens BAC clone RP11-485O17 from 2, comple... 40 5.5
14gb|AC145250.3| Macropus eugenii clone ME_KBa-232I1, complete seq... 40 5.5 
>ref|XM_482488.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1999

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                       
Query: 295 cacgggcaaattcagcacttggttgtgtgtcaagtaaagttcgaatgggtccatgaaaca 354
           ||||||||| ||| ||||| |||||  ||||||||||||||||||| ||||| || ||||
Sbjct: 607 cacgggcaagttctgcactgggttgcctgtcaagtaaagttcgaattggtccgtggaaca 548

                                                      
Query: 355 tcgcgaaaagcgaatgagattctttcaatattccttgcaatgc 397
           | | ||||||||| |||   ||||| |  ||||||||||||||
Sbjct: 547 ttgtgaaaagcgagtgaacctctttaagaattccttgcaatgc 505
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                            
Query: 295      cacgggcaaattcagcacttggttgtgtgtcaagtaaagttcgaatgggtccatgaaaca 354
                ||||||||| ||| ||||| |||||  ||||||||||||||||||| ||||| || ||||
Sbjct: 20547588 cacgggcaagttctgcactgggttgcctgtcaagtaaagttcgaattggtccgtggaaca 20547529

                                                           
Query: 355      tcgcgaaaagcgaatgagattctttcaatattccttgcaatgc 397
                | | ||||||||| |||   ||||| |  ||||||||||||||
Sbjct: 20547528 ttgtgaaaagcgagtgaacctctttaagaattccttgcaatgc 20547486
to top
>dbj|AP005734.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0032E15
          Length = 120419

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                         
Query: 295   cacgggcaaattcagcacttggttgtgtgtcaagtaaagttcgaatgggtccatgaaaca 354
             ||||||||| ||| ||||| |||||  ||||||||||||||||||| ||||| || ||||
Sbjct: 51549 cacgggcaagttctgcactgggttgcctgtcaagtaaagttcgaattggtccgtggaaca 51490

                                                        
Query: 355   tcgcgaaaagcgaatgagattctttcaatattccttgcaatgc 397
             | | ||||||||| |||   ||||| |  ||||||||||||||
Sbjct: 51489 ttgtgaaaagcgagtgaacctctttaagaattccttgcaatgc 51447
to top
>dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1663_D06
          Length = 139103

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 86/103 (83%)
 Strand = Plus / Minus

                                                                         
Query: 295   cacgggcaaattcagcacttggttgtgtgtcaagtaaagttcgaatgggtccatgaaaca 354
             ||||||||| ||| ||||| |||||  ||||||||||||||||||| ||||| || ||||
Sbjct: 21960 cacgggcaagttctgcactgggttgcctgtcaagtaaagttcgaattggtccgtggaaca 21901

                                                        
Query: 355   tcgcgaaaagcgaatgagattctttcaatattccttgcaatgc 397
             | | ||||||||| |||   ||||| |  ||||||||||||||
Sbjct: 21900 ttgtgaaaagcgagtgaacctctttaagaattccttgcaatgc 21858
to top
>dbj|AK066491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070L23, full
           insert sequence
          Length = 1999

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 295 cacgggcaaattcagcacttggttgtgtgtcaagtaaagttcgaatgggtccatgaaaca 354
           ||||||||| ||| ||||| |||||  ||||||||||||||||||| ||||| || ||||
Sbjct: 607 cacgggcaagttctgcactgggttgcctgtcaagtaaagttcgaattggtccgtggaaca 548

                        
Query: 355 tcgcgaaaagcga 367
           | | |||||||||
Sbjct: 547 ttgtgaaaagcga 535
to top
>gb|AY105857.1| Zea mays PCO097564 mRNA sequence
          Length = 987

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 309 gcacttggttgtgtgtcaagtaaagttcgaatgggtccatgaaacatcgcgaaaagcgaa 368
           ||||| |||||| ||| ||| |||||||| || |||||||||||||| || || || |||
Sbjct: 632 gcactgggttgtttgtgaagcaaagttcggattggtccatgaaacattgcaaagagagaa 573

               
Query: 369 tgag 372
           ||||
Sbjct: 572 tgag 569
to top
>emb|Z81479.1|CEC34F6 Caenorhabditis elegans Cosmid C34F6, complete sequence
          Length = 44369

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 138  aaaaaatggaacactaatttt 158
            |||||||||||||||||||||
Sbjct: 7974 aaaaaatggaacactaatttt 7954
to top
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    gtggattctttcaatattca 293
              ||||||||||||||||||||
Sbjct: 472685 gtggattctttcaatattca 472666
to top
>gb|AC142334.1| Pan troglodytes BAC clone RP43-34J11 from 7, complete sequence
          Length = 168008

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 367   aatgagattctttcaatattcctt 390
             ||||| ||||||||||||||||||
Sbjct: 26321 aatgatattctttcaatattcctt 26298
to top
>gb|AC084250.6| Homo sapiens chromosome 8, clone RP11-89F14, complete sequence
          Length = 151889

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    atgtgtggattctttcaata 289
              ||||||||||||||||||||
Sbjct: 123087 atgtgtggattctttcaata 123106
to top
>gb|AC020783.8| Homo sapiens chromosome 8, clone RP11-16M2, complete sequence
          Length = 153740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  atgtgtggattctttcaata 289
            ||||||||||||||||||||
Sbjct: 7638 atgtgtggattctttcaata 7657
to top
>gb|AC154308.3| Mus musculus BAC clone RP23-370E2 from chromosome 16, complete sequence
          Length = 202348

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   cactaaatcaaatgccttca 123
             ||||||||||||||||||||
Sbjct: 39476 cactaaatcaaatgccttca 39457
to top
>gb|AC097517.3| Homo sapiens BAC clone RP11-485O17 from 2, complete sequence
          Length = 92227

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  aatgagattctttcaatatt 386
            ||||||||||||||||||||
Sbjct: 5469 aatgagattctttcaatatt 5450
to top
>gb|AC145250.3| Macropus eugenii clone ME_KBa-232I1, complete sequence
          Length = 126347

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   gtggattctttcaatattca 293
             ||||||||||||||||||||
Sbjct: 22642 gtggattctttcaatattca 22623


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,908,098
Number of Sequences: 3902068
Number of extensions: 2908098
Number of successful extensions: 51154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51078
Number of HSP's gapped (non-prelim): 72
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top