>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                            
Query: 316      caagctgcgagagagcagcctccaccgtctccttcatntggaagcgatccatctnatcta 375
                ||||||| |||||||||||||||||| ||| |||||| ||||  | |||||| | |||||
Sbjct: 13517801 caagctgggagagagcagcctccaccatctgcttcatttggacactatccatgtgatcta 13517860

                       
Query: 376      cctgaaa 382
                |||||||
Sbjct: 13517861 cctgaaa 13517867



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 160     taaaaagagaggcaaaattct 180
               |||||||||||||||||||||
Sbjct: 2020928 taaaaagagaggcaaaattct 2020948

>emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10,
             complete sequence
          Length = 133238

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                         
Query: 316   caagctgcgagagagcagcctccaccgtctccttcatntggaagcgatccatctnatcta 375
             ||||||| |||||||||||||||||| ||| |||||| ||||  | |||||| | |||||
Sbjct: 45595 caagctgggagagagcagcctccaccatctgcttcatttggacactatccatgtgatcta 45654

                    
Query: 376   cctgaaa 382
             |||||||
Sbjct: 45655 cctgaaa 45661

>ref|XM_471697.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 933

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 316 caagctgcgagagagcagcctccaccgtctccttcatntggaagcgatccatctnatcta 375
           ||||||| |||||||||||||||||| ||| |||||| ||||  | |||||| | |||||
Sbjct: 895 caagctgggagagagcagcctccaccatctgcttcatttggacactatccatgtgatcta 836

              
Query: 376 cct 378
           |||
Sbjct: 835 cct 833

>dbj|AB040744.1| Oryza sativa RERJ1 mRNA for Transcription Factor, complete cds
          Length = 1353

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 316 caagctgcgagagagcagcctccaccgtctccttcatntggaagcgatccatctnatcta 375
           ||||||| |||||||||||||||||| ||| |||||| ||||  | |||||| | |||||
Sbjct: 960 caagctgggagagagcagcctccaccatctgcttcatttggacactatccatgtgatcta 901

              
Query: 376 cct 378
           |||
Sbjct: 900 cct 898

>gb|AC110160.10| Mus musculus chromosome 1, clone RP23-66A20, complete sequence
          Length = 179096

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 381   aaaagggaaattgatcgagtcag 403
             |||||||||||||||||||||||
Sbjct: 56293 aaaagggaaattgatcgagtcag 56315

>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold
          Length = 501879

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 183    catacattacataagatatatt 204
              ||||||||||||||||||||||
Sbjct: 224508 catacattacataagatatatt 224529

>gb|BC054607.1| Danio rerio cullin 4A, mRNA (cDNA clone MGC:64071 IMAGE:6794393),
            complete cds
          Length = 3208

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 334  cctccaccgtctccttcatntgga 357
            ||||||||||||||||||| ||||
Sbjct: 2234 cctccaccgtctccttcatctgga 2211

>gb|AC154523.2| Mus musculus BAC clone RP24-65H12 from chromosome 13, complete sequence
          Length = 196410

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 212    caaaagagagactgggtgagg 232
              |||||||||||||||||||||
Sbjct: 109795 caaaagagagactgggtgagg 109775

>gb|AC009305.2| Homo sapiens BAC clone RP11-153B21 from 2, complete sequence
          Length = 167116

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   agcagtggtccctaatagctc 284
             |||||||||||||||||||||
Sbjct: 59118 agcagtggtccctaatagctc 59138

>ref|NM_201027.1| Danio rerio cullin 4A (cul4a), mRNA
          Length = 3208

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 334  cctccaccgtctccttcatntgga 357
            ||||||||||||||||||| ||||
Sbjct: 2234 cctccaccgtctccttcatctgga 2211

>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06,
             complete sequence
          Length = 126447

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 160   taaaaagagaggcaaaattct 180
             |||||||||||||||||||||
Sbjct: 37588 taaaaagagaggcaaaattct 37608

>gb|AC165953.3| Mus musculus BAC clone RP24-75N14 from chromosome 17, complete
            sequence
          Length = 224622

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  aaaagagagactgggtgagg 232
            ||||||||||||||||||||
Sbjct: 6868 aaaagagagactgggtgagg 6887

>gb|AC110534.11| Mus musculus chromosome 17, clone RP23-174D11, complete sequence
          Length = 174600

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   aaaagagagactgggtgagg 232
             ||||||||||||||||||||
Sbjct: 58064 aaaagagagactgggtgagg 58045

>emb|AL049691.18|HSJ1123D4 Human DNA sequence from clone RP5-1123D4 on chromosome 20q12 Contains
              STSs and GSSs, complete sequence
          Length = 169243

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    ctacctgaaaaagggaaatt 392
              ||||||||||||||||||||
Sbjct: 164087 ctacctgaaaaagggaaatt 164068

>gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete sequence
          Length = 176296

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   ctcaggaataagtaaactcc 442
             ||||||||||||||||||||
Sbjct: 83527 ctcaggaataagtaaactcc 83546

>gb|AC009381.10| Drosophila melanogaster 3L BAC RP98-13N10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167816

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    gtaaaaagagaggcaaaatt 178
              ||||||||||||||||||||
Sbjct: 107717 gtaaaaagagaggcaaaatt 107736

>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete
             sequence
          Length = 107097

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   tctcaggaataagtaaactc 441
             ||||||||||||||||||||
Sbjct: 50442 tctcaggaataagtaaactc 50423

>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 423     ctcaggaataagtaaactcc 442
               ||||||||||||||||||||
Sbjct: 1512973 ctcaggaataagtaaactcc 1512992

>gb|AC092138.4| Homo sapiens chromosome 16 clone RP11-351A20, complete sequence
          Length = 189505

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   aaaaagagaggcaaaattct 180
             ||||||||||||||||||||
Sbjct: 62764 aaaaagagaggcaaaattct 62745

>gb|AC117376.3| Homo sapiens 12 BAC RP11-349K16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177041

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   gaatatacttgcaaaaggaa 560
             ||||||||||||||||||||
Sbjct: 40250 gaatatacttgcaaaaggaa 40231

>gb|AE003515.4| Drosophila melanogaster chromosome 3L, section 70 of 83 of the complete
              sequence
          Length = 234263

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    gtaaaaagagaggcaaaatt 178
              ||||||||||||||||||||
Sbjct: 103055 gtaaaaagagaggcaaaatt 103036


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,305,993
Number of Sequences: 3902068
Number of extensions: 4305993
Number of successful extensions: 72012
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71935
Number of HSP's gapped (non-prelim): 77
length of query: 578
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 555
effective length of database: 17,143,297,704
effective search space: 9514530225720
effective search space used: 9514530225720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)