ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63o18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBLC_HUMAN (Q9ULV8) Signal transduction protein CBL-C (SH3-bindi... 34 0.21
2ZCHC4_MOUSE (Q8BKW4) Zinc finger CCHC domain-containing protein 4 30 3.1
3AKR1_GIBZE (Q4I8B6) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Anky... 30 4.0
4SULF1_CAEEL (Q21376) Putative extracellular sulfatase Sulf-1 hom... 28 8.9
5PYR1_EMENI (O93937) Protein pyrABCN [Includes: Glutamine-depende... 28 8.9

>CBLC_HUMAN (Q9ULV8) Signal transduction protein CBL-C (SH3-binding protein|
           CBL-C) (CBL-3) (RING finger protein 57)
          Length = 474

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 416 TSEDEGNAGQRYHRFLDQGQTPLCCPSSPTRP 321
           T+ED GN+  +  R L+ GQ PL  P  P RP
Sbjct: 409 TAEDSGNSSDQEGRELELGQVPLSAPPLPPRP 440



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>ZCHC4_MOUSE (Q8BKW4) Zinc finger CCHC domain-containing protein 4|
          Length = 512

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 419 ETSEDEGNAGQRYHRFLDQGQTPLCCPSSPTRPAALYIHVPRLSFI 282
           E+ E +G+AG+R           +  PS+PT PA L  H P L F+
Sbjct: 9   ESLEGDGDAGRR------ASGVEVALPSNPTAPAPLCPHGPTLLFV 48



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>AKR1_GIBZE (Q4I8B6) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein AKR1)
          Length = 702

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -1

Query: 446 KGETGEANGETSEDEGNAGQRYHRFLDQ-GQTPLCCPSSPTRPAALYIHVPRLSFITKF- 273
           K +TG+    T++ E N    +HR L + G      P+ P  P A Y    + SF+T+F 
Sbjct: 224 KTQTGKTPSVTAK-ELNTEVAWHRALTECGFDEDGHPAVPPWPGASYFLKDKRSFVTRFL 282

Query: 272 YFNRYMIVWCCSV 234
           +F  +++VW   V
Sbjct: 283 FFWPFVLVWAMLV 295



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>SULF1_CAEEL (Q21376) Putative extracellular sulfatase Sulf-1 homolog precursor|
           (EC 3.1.6.-) (CeSulf-1)
          Length = 709

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 356 TPLCCPSSPTRPAALYIH 303
           TP+CCPS  T    LY+H
Sbjct: 76  TPICCPSRSTILTGLYVH 93



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>PYR1_EMENI (O93937) Protein pyrABCN [Includes: Glutamine-dependent|
            carbamoyl-phosphate (EC 6.3.5.5); Aspartate
            carbamoyltransferase (EC 2.1.3.2)]
          Length = 2275

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 344  NIGVFVPGLGSGDS 385
            N+G FVPGLGS DS
Sbjct: 1552 NVGAFVPGLGSADS 1565


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,272,837
Number of Sequences: 219361
Number of extensions: 1275519
Number of successful extensions: 3239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3238
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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