ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63o18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX546477.9| Zebrafish DNA sequence from clone DKEYP-79C5 in ... 42 1.6
2emb|BX322234.7| Human DNA sequence from clone XXyac-65C7_A on ch... 42 1.6
3emb|CR937028.1| Zebrafish DNA sequence from clone DKEYP-79C5 in ... 42 1.6
4emb|BX571674.7| Zebrafish DNA sequence from clone DKEY-193C22 in... 42 1.6
5gb|AC144753.3| Ornithorhynchus anatinus clone OA_Bb-228F7, compl... 42 1.6
6gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, com... 40 6.3
7ref|XM_654820.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.3
8gb|AC025724.3| Caenorhabditis elegans cosmid Y67D8C, complete se... 40 6.3
9gb|AC096917.3| Homo sapiens chromosome 3 clone RP11-94D19, compl... 40 6.3
10emb|AL096867.15|HSJ365O19 Human DNA sequence from clone RP3-365O... 40 6.3
11gb|AC149149.3| Xenopus tropicalis clone ISB-175F5, complete sequ... 40 6.3
12emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in ... 40 6.3
13gb|AC138071.2| Homo sapiens chromosome 3 clone RP11-504G20, comp... 40 6.3
14dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.3
15gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.3
16gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, com... 40 6.3

>emb|BX546477.9| Zebrafish DNA sequence from clone DKEYP-79C5 in linkage group 9,
             complete sequence
          Length = 58124

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 268   aaataaaatttggtaataaag 288
             |||||||||||||||||||||
Sbjct: 28842 aaataaaatttggtaataaag 28862



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>emb|BX322234.7| Human DNA sequence from clone XXyac-65C7_A on chromosome 6 Contains the
              THBS2 gene for thrombospondin 2, two novel genes, a
              chromosome 6 open reading frame 55 (C6orf55) pseudogene and
              two CpG islands, complete sequence
          Length = 159175

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 428    cttctccagtttctccttttc 448
              |||||||||||||||||||||
Sbjct: 106203 cttctccagtttctccttttc 106183



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>emb|CR937028.1| Zebrafish DNA sequence from clone DKEYP-79C5 in linkage group 9,
             complete sequence
          Length = 58124

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 268   aaataaaatttggtaataaag 288
             |||||||||||||||||||||
Sbjct: 28842 aaataaaatttggtaataaag 28862



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>emb|BX571674.7| Zebrafish DNA sequence from clone DKEY-193C22 in linkage group 5,
              complete sequence
          Length = 195181

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 255    catgtacctattgaaataaaa 275
              |||||||||||||||||||||
Sbjct: 177337 catgtacctattgaaataaaa 177317



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>gb|AC144753.3| Ornithorhynchus anatinus clone OA_Bb-228F7, complete sequence
          Length = 116899

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 325   ctcgtgggggaagatggacaacata 349
             |||| ||||||||||||||||||||
Sbjct: 98676 ctcgagggggaagatggacaacata 98652



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>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence
          Length = 168158

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    acacaccatacacactcagt 203
              ||||||||||||||||||||
Sbjct: 164776 acacaccatacacactcagt 164757



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>ref|XM_654820.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2308.2), mRNA
          Length = 2487

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  cactagctgcaacacaccat 192
            ||||||||||||||||||||
Sbjct: 2258 cactagctgcaacacaccat 2277



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>gb|AC025724.3| Caenorhabditis elegans cosmid Y67D8C, complete sequence
          Length = 103670

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 259   tacctattgaaataaaatttggta 282
             |||||||| |||||||||||||||
Sbjct: 48809 tacctattcaaataaaatttggta 48832



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>gb|AC096917.3| Homo sapiens chromosome 3 clone RP11-94D19, complete sequence
          Length = 170184

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 425    tggcttctccagtttctccttttc 448
              ||||||||||| ||||||||||||
Sbjct: 108077 tggcttctccattttctccttttc 108100



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>emb|AL096867.15|HSJ365O19 Human DNA sequence from clone RP3-365O19 on chromosome 6q23.1-24.3
              Contains the 5' end of the GRM1 gene for metabotropic
              glutamate receptor 1, complete sequence
          Length = 156935

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    attgaaataaaatttggtaa 283
              ||||||||||||||||||||
Sbjct: 112529 attgaaataaaatttggtaa 112548



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>gb|AC149149.3| Xenopus tropicalis clone ISB-175F5, complete sequence
          Length = 116498

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 340   ggacaacataggggtgtttgtccc 363
             ||||||||||| ||||||||||||
Sbjct: 97282 ggacaacatagaggtgtttgtccc 97305



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>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete
              sequence
          Length = 272840

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 183    aacacaccatacacactcagtgacactc 210
              ||||||||||||||||||| | ||||||
Sbjct: 193786 aacacaccatacacactcattcacactc 193759



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>gb|AC138071.2| Homo sapiens chromosome 3 clone RP11-504G20, complete sequence
          Length = 194062

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 425   tggcttctccagtttctccttttc 448
             ||||||||||| ||||||||||||
Sbjct: 42844 tggcttctccattttctccttttc 42867



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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 320     cgggtctcgtgggggaagat 339
               ||||||||||||||||||||
Sbjct: 1482823 cgggtctcgtgggggaagat 1482804



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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 320     cgggtctcgtgggggaagat 339
               ||||||||||||||||||||
Sbjct: 1157518 cgggtctcgtgggggaagat 1157499



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>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence
          Length = 233632

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   acacaccatacacactcagt 203
             ||||||||||||||||||||
Sbjct: 52857 acacaccatacacactcagt 52838


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,857,474
Number of Sequences: 3902068
Number of extensions: 3857474
Number of successful extensions: 75477
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75441
Number of HSP's gapped (non-prelim): 36
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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