ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63o05 |
|---|---|
| Clone Library Name | barley_pub |
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 34.7 bits (78), Expect = 0.24 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = -3 Query: 417 VFRLTWRSAFVCLTTVFAMLLPFFGNVVGLLGAVSFWPLTVYFP 286 V L+ R+A VC+T V A+L+P V+ L+G+VS L + P Sbjct: 372 VVDLSARTAMVCVTCVLAVLIPRLDLVISLVGSVSSSALALIIP 415
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 33.5 bits (75), Expect = 0.53 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = -3 Query: 399 RSAFVCLTTVFAMLLPFFGNVVGLLGAVSFWPLTVYFP 286 R+A VC+T V A+L+P V+ L+G+VS L + P Sbjct: 378 RTAMVCVTCVLAILIPRLDLVISLVGSVSSSALALIIP 415
>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 1004 Score = 33.1 bits (74), Expect = 0.70 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = +1 Query: 199 DEASDAEHPKADP--LRAPPGHAALPDVHLDGEVDGERPEGDG 321 ++A A PKA P RAPPG A PD G R EG G Sbjct: 605 EDAPAARRPKAPPGPARAPPGQPAEPDAPRSSPGPGAREEGAG 647
>MCHR1_MOUSE (Q8JZL2) Melanin-concentrating hormone receptor 1 (MCH receptor 1)| (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein coupled receptor 24) (Somatostatin receptor-like protein) (SLC-1) Length = 423 Score = 33.1 bits (74), Expect = 0.70 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -3 Query: 498 VERWAASTWPDSVFISREFRVGPFALSVFRLTWRSAFVCLTTV--FAMLLPFFGNVVG 331 ++R+ A+ P S S +FR A V L W +F+ +T V +A L+PF G VG Sbjct: 209 IDRYLATVHPIS---STKFRKPSMATLVICLLWALSFISITPVWLYARLIPFPGGAVG 263
>MCHR1_RAT (P97639) Melanin-concentrating hormone receptor 1 (MCH receptor 1)| (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein coupled receptor 24) (Somatostatin receptor-like protein) (SLC-1) (Fragment) Length = 360 Score = 33.1 bits (74), Expect = 0.70 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -3 Query: 498 VERWAASTWPDSVFISREFRVGPFALSVFRLTWRSAFVCLTTV--FAMLLPFFGNVVG 331 ++R+ A+ P S S +FR A V L W +F+ +T V +A L+PF G VG Sbjct: 146 IDRYLATVHPIS---STKFRKPSMATLVICLLWALSFISITPVWLYARLIPFPGGAVG 200
>MCHR1_MACMU (Q8MJ89) Melanin-concentrating hormone receptor 1 (MCH receptor 1)| (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein coupled receptor 24) (Fragment) Length = 388 Score = 32.7 bits (73), Expect = 0.91 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -3 Query: 498 VERWAASTWPDSVFISREFRVGPFALSVFRLTWRSAFVCLTTV--FAMLLPFFGNVVG 331 ++R+ A+ P S S +FR A V L W +F+ +T V +A L+PF G VG Sbjct: 174 IDRYLATVHPIS---STKFRKPSVATLVICLLWALSFISITPVWLYARLIPFPGGAVG 228
>S36A1_HUMAN (Q7Z2H8) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 476 Score = 32.7 bits (73), Expect = 0.91 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -3 Query: 399 RSAFVCLTTVFAMLLPFFGNVVGLLGAVSFWPLTVYFP 286 R+ VCLT + A+L+P V+ L+G+VS L + P Sbjct: 379 RTVLVCLTCILAILIPRLDLVISLVGSVSSSALALIIP 416
>MCHR1_PANTR (Q5IJ49) Melanin-concentrating hormone receptor 1 (MCH receptor 1)| (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein coupled receptor 24) Length = 422 Score = 32.7 bits (73), Expect = 0.91 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -3 Query: 498 VERWAASTWPDSVFISREFRVGPFALSVFRLTWRSAFVCLTTV--FAMLLPFFGNVVG 331 ++R+ A+ P S S +FR A V L W +F+ +T V +A L+PF G VG Sbjct: 208 IDRYLATVHPIS---STKFRKPSVATLVICLLWALSFISITPVWLYARLIPFPGGAVG 262
>MCHR1_HUMAN (Q99705) Melanin-concentrating hormone receptor 1 (MCH receptor 1)| (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein coupled receptor 24) (Somatostatin receptor-like protein) (SLC-1) Length = 422 Score = 32.7 bits (73), Expect = 0.91 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -3 Query: 498 VERWAASTWPDSVFISREFRVGPFALSVFRLTWRSAFVCLTTV--FAMLLPFFGNVVG 331 ++R+ A+ P S S +FR A V L W +F+ +T V +A L+PF G VG Sbjct: 208 IDRYLATVHPIS---STKFRKPSVATLVICLLWALSFISITPVWLYARLIPFPGGAVG 262
>COL14_CAEEL (P18834) Cuticle collagen 14| Length = 345 Score = 31.2 bits (69), Expect = 2.6 Identities = 28/81 (34%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Frame = +1 Query: 85 FGREGNWCRWC*SAAERLVHFERFDNVGDGARCGGDGHDEASDAEHPKADPLRAPPGHAA 264 F EG C C H GDG R G DG D P P APPG Sbjct: 143 FNSEGGGCCTC--------HRGPPGPAGDGGRDGADGVDGTPGEIGPPGPP--APPG--- 189 Query: 265 LPDVH--LDGEVDGERPEGDG 321 PD H + E P GDG Sbjct: 190 -PDPHSLFPPQCPCEAPPGDG 209
>YDHJ_ECOLI (P76185) Hypothetical protein ydhJ| Length = 285 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/60 (35%), Positives = 31/60 (51%) Frame = +2 Query: 341 LPKKGSSMAKTVVRQTNADRHVSRNTLSANGPTRNSREMKTLSGHVDAAQRSTKAKMGWQ 520 L K S +AK + N RH+S+N +SA + +K + VDAAQ + K + WQ Sbjct: 91 LAKAQSDLAKAN-NEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLK-QAQWQ 148
>CRD1_GOSHI (Q6SJV8) Magnesium-protoporphyrin IX monomethyl ester [oxidative]| cyclase, chloroplast precursor (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) Length = 405 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/69 (27%), Positives = 27/69 (39%) Frame = -3 Query: 561 VAIVVHLVGAYQVFCQPIFAFVERWAASTWPDSVFISREFRVGPFALSVFRLTWRSAFVC 382 + I HL + C PIF + E W F S + P L+ ++ S F C Sbjct: 224 ITIYRHLKENPEYQCYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFC 283 Query: 381 LTTVFAMLL 355 L+ M L Sbjct: 284 LSVYVTMYL 292
>BTUB_PHOLL (Q7MYE3) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 619 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -3 Query: 327 LGAVSFWPLTVYFPVEMYIRQR 262 LG VSFW LTV +PV Y+ R Sbjct: 566 LGGVSFWDLTVSYPVTSYLTIR 587
>CRD1_ARATH (Q9M591) Magnesium-protoporphyrin IX monomethyl ester [oxidative]| cyclase, chloroplast precursor (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) (Copper response defect 1 protein) (Dicarboxylate diiron protein) (AtZIP Length = 409 Score = 30.4 bits (67), Expect = 4.5 Identities = 19/69 (27%), Positives = 27/69 (39%) Frame = -3 Query: 561 VAIVVHLVGAYQVFCQPIFAFVERWAASTWPDSVFISREFRVGPFALSVFRLTWRSAFVC 382 + I HL + C PIF + E W F S + P L+ ++ S F C Sbjct: 228 ITIYRHLKENPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWQAKLWSRFFC 287 Query: 381 LTTVFAMLL 355 L+ M L Sbjct: 288 LSVYVTMYL 296
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 30.0 bits (66), Expect = 5.9 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = +2 Query: 332 PTTL--PKKGSSMAKTVVRQTNADRHVSRNTLSANGPTRNSREMKTLSGHVDAAQRSTKA 505 P+TL PKKGSSM V+ T A VS A+ R ++ T V + S A Sbjct: 7 PSTLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRT--QVATAPSSVTTSPGSATA 64 Query: 506 KMGWQKT 526 K +KT Sbjct: 65 KPSGKKT 71
>VG15_BPPH8 (P14815) Replication protein 15| Length = 302 Score = 30.0 bits (66), Expect = 5.9 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +2 Query: 323 PRSPTTLPKKGSSMAKTVVRQTNADRHVSRNTLSANGPTRNSREMKTLSGHVDAA 487 P++ + PK G + KTV Q + R++ + + ++R K LS H +AA Sbjct: 130 PKTGKSFPKSGITFPKTVDTQYKNKNSIKRSSSENSDESSDARLKKFLSTHPEAA 184
>YAJ6_SCHPO (Q09906) Hypothetical UPF0206 protein C30D11.06c in chromosome I| Length = 426 Score = 29.6 bits (65), Expect = 7.7 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Frame = -3 Query: 600 GFYEPFWLLDIANVAIVVHLV-GAYQVFCQPIFAFVERWAASTWPDSVFISREFRVGPFA 424 G + WL +A+++ V G Y QP++A + W + S+ Sbjct: 133 GILQYTWLKPFLVIAVLLTKVTGVYDREDQPVYASADLWIGLVYNISI-----------T 181 Query: 423 LSVFRLTWRSAFVCLTTVFAMLLPF--FGNVVGLLGAVSFWPLTV 295 LS++ LT + +VCL A PF F +V ++ A S+W TV Sbjct: 182 LSLYSLT--TFWVCLHEELAPFRPFPKFLSVKAIIFA-SYWQQTV 223
>CRD1_EUPES (Q945B7) Magnesium-protoporphyrin IX monomethyl ester [oxidative]| cyclase, chloroplast precursor (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) Length = 405 Score = 29.6 bits (65), Expect = 7.7 Identities = 18/69 (26%), Positives = 27/69 (39%) Frame = -3 Query: 561 VAIVVHLVGAYQVFCQPIFAFVERWAASTWPDSVFISREFRVGPFALSVFRLTWRSAFVC 382 + I HL + C PIF + E W F S + P L+ ++ + F C Sbjct: 224 ITIYRHLKENPEYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFC 283 Query: 381 LTTVFAMLL 355 L+ M L Sbjct: 284 LSVYVTMYL 292
>P60_LISMO (P21171) Protein p60 precursor (Invasion-associated protein)| Length = 484 Score = 29.6 bits (65), Expect = 7.7 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = +2 Query: 281 STGK*TVSGQKETAPRSPTTLPKKG---SSMAKTVVRQTNADRHVSRNTLSANGPTRNS 448 +T K + Q++TAP++PT K S+ TN + + + N + N P++N+ Sbjct: 282 TTEKKETATQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNTNNTNTNTPSKNT 340 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,737,097 Number of Sequences: 219361 Number of extensions: 1258850 Number of successful extensions: 3999 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3838 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3995 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
