ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63o04 |
|---|---|
| Clone Library Name | barley_pub |
>FIZ1_MOUSE (Q9WTJ4) Flt3-interacting zinc finger protein 1| Length = 500 Score = 27.7 bits (60), Expect(2) = 2.2 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 17/53 (32%) Frame = +1 Query: 376 AAAWRAW----PXGCPRC-------------RVASSPRGQRARPTQAWTAGTG 483 AA W A P CPRC ++ +G A PTQ W +G G Sbjct: 220 AAHWAAHTDVKPFKCPRCERDFNAPALLERHKLTHDLQGSNAPPTQVWASGGG 272 Score = 21.9 bits (45), Expect(2) = 2.2 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 460 QAWTAGTGESPSATAS*HLWAMAPGPTG 543 Q W AG SP+ L A+ PG G Sbjct: 289 QTWDAGLLLSPTGAGVPKLEALLPGDEG 316
>FIZ1_HUMAN (Q96SL8) Flt3-interacting zinc finger protein 1| Length = 496 Score = 30.0 bits (66), Expect = 4.6 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 17/56 (30%) Frame = +1 Query: 376 AAAWRAW----PXGCPRC-------------RVASSPRGQRARPTQAWTAGTGESP 492 AA W A P CPRC ++ +G A P QAW AG G P Sbjct: 216 AAHWAAHTDVKPFKCPRCERDFNAPALLERHKLTHDLQGPGAPPAQAWAAGPGAGP 271
>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1464 Score = 29.6 bits (65), Expect = 6.0 Identities = 25/74 (33%), Positives = 32/74 (43%) Frame = -2 Query: 536 GPGAIAQRC*DAVAEGLSPVPAVHAWVGRAR*PRGELATRHRGHPXGQARQAAADRHWQE 357 GPG A+ +A+ E L+P P A V + RG + + G ARQ A R Q Sbjct: 351 GPGQKARLMAEALKEALTPAPIPFAAVQQKAGKRGTVTCWNCGKQGHTARQCRAPRR-QG 409 Query: 356 TAKPLVTRHTHSPC 315 K T H S C Sbjct: 410 CWKCGKTGHIMSKC 423
>GUC2E_RAT (P51840) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) (Guanylate| cyclase 2E) Length = 1108 Score = 29.6 bits (65), Expect = 6.0 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 435 PRSACAPHPGMDCWDG*ESLCNGVLAP 515 PR A AP P CW + +CNG + P Sbjct: 440 PRGAPAPGPDPSCWFDPDVICNGGVEP 466
>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 29.6 bits (65), Expect = 6.0 Identities = 25/74 (33%), Positives = 32/74 (43%) Frame = -2 Query: 536 GPGAIAQRC*DAVAEGLSPVPAVHAWVGRAR*PRGELATRHRGHPXGQARQAAADRHWQE 357 GPG A+ +A+ E L+P P A V + RG + + G ARQ A R Q Sbjct: 351 GPGQKARLMAEALKEALTPAPIPFAAVQQKAGKRGTVTCWNCGKQGHTARQCRAPRR-QG 409 Query: 356 TAKPLVTRHTHSPC 315 K T H S C Sbjct: 410 CWKCGKTGHIMSKC 423
>ASTN_MOUSE (Q61137) Astrotactin-1 precursor (Neuronal migration protein GC14)| Length = 1302 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 289 PQHMAAIMMHGECVCRVTSGLAVSCQCRSAAAWRAWPXGCPRCRVASSP 435 P+++A++ G R+ +G+ + CQ + P CP C V SSP Sbjct: 919 PEYIASLSDSG--TKRMAAGVRMECQSKGRC-----PSSCPLCHVTSSP 960
>MTRP_HUMAN (Q15012) Lysosomal-associated transmembrane protein 4A (Golgi| 4-transmembrane spanning transporter MTP) Length = 233 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = -2 Query: 152 ATRGCMCSHVK-GTVIMGMSWCLVNNQLVIII 60 +TR C C HV+ GT+I+G +W +V N L+ I+ Sbjct: 16 STRCCGCCHVRTGTIILG-TWYMVVNLLMAIL 46
>TX21A_PHONI (O76198) Neurotoxin Pn2-1A precursor| Length = 115 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +1 Query: 319 GECVCRVTSGLAVSCQCRSAAAWRAW 396 GECVC ++ C CR W AW Sbjct: 82 GECVCALSYEGKYRCICRQGYVWIAW 107
>MIS_BOVIN (P03972) Muellerian-inhibiting factor precursor (MIS)| (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting substance) Length = 575 Score = 29.3 bits (64), Expect = 7.8 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 6/77 (7%) Frame = +3 Query: 258 TTF---PSSHGRKSATHGGDYDAWRMCMPRHKWLGRLLPVSVRCRLAGLAXWMSPMPGGE 428 TTF P+ +G+ H AW + P +WL L V L + P PGG Sbjct: 112 TTFAVCPAGNGQPVLPHLQRLQAW-LGEPGGRWLVVLHLEEVTWEPTPLLRFQEPPPGGA 170 Query: 429 LPPRSACA---PHPGMD 470 PP A P PG++ Sbjct: 171 SPPELALLVVYPGPGLE 187
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/63 (33%), Positives = 25/63 (39%) Frame = +1 Query: 319 GECVCRVTSGLAVSCQCRSAAAWRAWPXGCPRCRVASSPRGQRARPTQAWTAGTGESPSA 498 G C R A +C SAAA C R R SSP T AW+ G P+A Sbjct: 189 GSCGARTAPTPAPTCASPSAAASSC----CRRRRACSSP-------TTAWSGACGAGPTA 237 Query: 499 TAS 507 + Sbjct: 238 ATA 240
>MTRP_MOUSE (Q60961) Lysosomal-associated transmembrane protein 4A (Golgi| 4-transmembrane spanning transporter) (Mouse transporter protein) (MTP) Length = 233 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = -2 Query: 152 ATRGCMCSHVK-GTVIMGMSWCLVNNQLVIII 60 +TR C C HV+ GT+I+G +W +V N L+ I+ Sbjct: 16 STRCCGCFHVRTGTIILG-TWYMVVNLLMAIL 46 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,870,136 Number of Sequences: 219361 Number of extensions: 1944017 Number of successful extensions: 5820 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5810 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
