>gb|AY105220.1| Zea mays PCO141670 mRNA sequence
          Length = 880

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 367 tgtcggtccgctgccgcttggcgggcttggcccantggatgtccccgatgccgggtg 423
           ||||||||| | ||| |||||| ||||| ||||| |||||||| |||||||||||||
Sbjct: 700 tgtcggtcctcagcctcttggcaggcttcgcccactggatgtctccgatgccgggtg 644



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 489 tccctctgcaacggcgtcctagcacctctgggcga 523
           |||||||| ||||||||||| ||||||||||||||
Sbjct: 542 tccctctggaacggcgtcctggcacctctgggcga 508

>ref|XM_463856.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 6603

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 501  ggcgtcctagcacctctgggcgatggcaccgggcccaaccggccagtgttggtcgggg 558
            |||||||| |||||||| || |||||| |||| |||| ||| || | |||||||||||
Sbjct: 6422 ggcgtcctggcacctctaggtgatggcgccggtcccatccgcccggcgttggtcgggg 6365

>emb|AL132869.1|SPBC557 S.pombe chromosome II cosmid c557
          Length = 9749

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 208  agtaaacaaacaaatacccaac 229
            ||||||||||||||||||||||
Sbjct: 7503 agtaaacaaacaaatacccaac 7524

>dbj|AK141362.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:C430039L03 product:aryl
            hydrocarbon receptor nuclear translocator, full insert
            sequence
          Length = 4036

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 123  cacatgagaacacatgcatcctctgg 148
            ||||||||||||||||||| ||||||
Sbjct: 3890 cacatgagaacacatgcatgctctgg 3865

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                        
Query: 501    ggcgtcctagcacctctgggcgatggcaccgggcccaaccggccagtgttggtcgggg 558
              |||||||| |||||||| || |||||| |||| |||| ||| || | |||||||||||
Sbjct: 749303 ggcgtcctggcacctctaggtgatggcgccggtcccatccgcccggcgttggtcgggg 749360

>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0036E06
          Length = 137926

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 501   ggcgtcctagcacctctgggcgatggcaccgggcccaaccggccagtgttggtcgggg 558
             |||||||| |||||||| || |||||| |||| |||| ||| || | |||||||||||
Sbjct: 27434 ggcgtcctggcacctctaggtgatggcgccggtcccatccgcccggcgttggtcgggg 27491

>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1399_H05
          Length = 147670

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                        
Query: 501    ggcgtcctagcacctctgggcgatggcaccgggcccaaccggccagtgttggtcgggg 558
              |||||||| |||||||| || |||||| |||| |||| ||| || | |||||||||||
Sbjct: 106198 ggcgtcctggcacctctaggtgatggcgccggtcccatccgcccggcgttggtcgggg 106255

>gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208717

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 219    aaatacccaacatacagaaaga 240
              ||||||||||||||||||||||
Sbjct: 158678 aaatacccaacatacagaaaga 158699

>gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone rp23-422n18, complete
              sequence
          Length = 188880

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 123    cacatgagaacacatgcatcctctgg 148
              ||||||||||||||||||| ||||||
Sbjct: 123238 cacatgagaacacatgcatgctctgg 123263

>emb|CR524825.5| Zebrafish DNA sequence from clone CH211-15N24 in linkage group 16,
             complete sequence
          Length = 134382

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 201   tctttacagtaaacaaacaaa 221
             |||||||||||||||||||||
Sbjct: 33852 tctttacagtaaacaaacaaa 33832

>emb|AL021706.1|HS717L17 Human DNA sequence from clone RP4-717L17 on chromosome Xq21.1-21.33,
             complete sequence
          Length = 96079

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 203   tttacagtaaacaaacaaataccca 227
             |||||||||| ||||||||||||||
Sbjct: 89808 tttacagtaaccaaacaaataccca 89784

>emb|BX649265.5| Zebrafish DNA sequence from clone CH211-134G22 in linkage group 16,
            complete sequence
          Length = 178901

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 201  tctttacagtaaacaaacaaa 221
            |||||||||||||||||||||
Sbjct: 5605 tctttacagtaaacaaacaaa 5585

>emb|AL731692.8| Mouse DNA sequence from clone RP23-245M18 on chromosome X, complete
             sequence
          Length = 169309

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 215   aaacaaatacccaacatacagaaag 239
             |||||||||||||||||||| ||||
Sbjct: 53928 aaacaaatacccaacatacacaaag 53952

>gb|AC102907.11| Mus musculus chromosome 1, clone RP24-291E1, complete sequence
          Length = 185121

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    aaacaaacaaatacccaacataca 234
              ||||||||||| ||||||||||||
Sbjct: 107522 aaacaaacaaacacccaacataca 107545

>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
              genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     atacaacagatgataattac 71
              ||||||||||||||||||||
Sbjct: 859026 atacaacagatgataattac 859007

>gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, complete sequence
          Length = 223742

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   ctttcacatgagaacacatg 138
             ||||||||||||||||||||
Sbjct: 49523 ctttcacatgagaacacatg 49542

>gb|AC164068.2| Mus musculus chromosome 1, clone RP23-5H15, complete sequence
          Length = 178006

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   aaacaaacaaatacccaacataca 234
             ||||||||||| ||||||||||||
Sbjct: 28681 aaacaaacaaacacccaacataca 28658

>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     atacaacagatgataattac 71
              ||||||||||||||||||||
Sbjct: 932618 atacaacagatgataattac 932599

>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     atacaacagatgataattac 71
              ||||||||||||||||||||
Sbjct: 951684 atacaacagatgataattac 951665

>gb|AC116331.2| Homo sapiens chromosome 5 clone CTD-2037A14, complete sequence
          Length = 105259

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   ccctttcacatgagaacaca 136
             ||||||||||||||||||||
Sbjct: 11941 ccctttcacatgagaacaca 11922

>emb|CR389675.1| Gallus gallus finished cDNA, clone ChEST805n14
          Length = 748

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 460 caggcatggactgctgggac 479
           ||||||||||||||||||||
Sbjct: 221 caggcatggactgctgggac 202

>emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in linkage group 1,
             complete sequence
          Length = 209946

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   ttacagtaaacaaacaaata 223
             ||||||||||||||||||||
Sbjct: 83977 ttacagtaaacaaacaaata 83958

>dbj|AK039552.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330060E19
           product:unclassifiable, full insert sequence
          Length = 398

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 215 aaacaaatacccaacataca 234
           ||||||||||||||||||||
Sbjct: 20  aaacaaatacccaacataca 1

>ref|XM_233606.3| PREDICTED: Rattus norvegicus perlecan (LOC313641), mRNA
          Length = 13848

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  gcgtcacaagtggcttggcc 354
            ||||||||||||||||||||
Sbjct: 3014 gcgtcacaagtggcttggcc 2995

>emb|BX005350.6| Zebrafish DNA sequence from clone DKEY-58C8 in linkage group 1,
             complete sequence
          Length = 195436

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   ttacagtaaacaaacaaata 223
             ||||||||||||||||||||
Sbjct: 38634 ttacagtaaacaaacaaata 38615

>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   ccaacatacagaaagaaaat 244
             ||||||||||||||||||||
Sbjct: 96093 ccaacatacagaaagaaaat 96112

>dbj|AP006196.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-347H8, complete
              sequence
          Length = 181660

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     catacaacagatgataatta 70
              ||||||||||||||||||||
Sbjct: 138889 catacaacagatgataatta 138870

>dbj|AP006195.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-278C16, complete
             sequence
          Length = 157800

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    catacaacagatgataatta 70
             ||||||||||||||||||||
Sbjct: 12390 catacaacagatgataatta 12371

>emb|CR931938.9| Zebrafish DNA sequence from clone DKEY-115J2 in linkage group 1,
            complete sequence
          Length = 86064

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 204  ttacagtaaacaaacaaata 223
            ||||||||||||||||||||
Sbjct: 5564 ttacagtaaacaaacaaata 5583

>emb|AL356438.15| Human DNA sequence from clone RP11-347H8 on chromosome 6, complete
             sequence
          Length = 91536

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    catacaacagatgataatta 70
             ||||||||||||||||||||
Sbjct: 78336 catacaacagatgataatta 78317

>gb|M77174.1|MUSPERPA Mouse perlecan mRNA, complete cds
          Length = 12667

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 335  gcgtcacaagtggcttggccgtct 358
            ||||| ||||||||||||||||||
Sbjct: 3100 gcgtcgcaagtggcttggccgtct 3077

>dbj|AP002529.1| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section
              2/4
          Length = 300000

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     catacaacagatgataatta 70
              ||||||||||||||||||||
Sbjct: 168216 catacaacagatgataatta 168197

>dbj|AB042031.1| Homo sapiens genomic DNA, chromosome 6q21, BAC clone:515A4, complete
              sequence
          Length = 194732

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     catacaacagatgataatta 70
              ||||||||||||||||||||
Sbjct: 158138 catacaacagatgataatta 158119


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,589,826
Number of Sequences: 3902068
Number of extensions: 5589826
Number of successful extensions: 95237
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95112
Number of HSP's gapped (non-prelim): 125
length of query: 558
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 535
effective length of database: 17,143,297,704
effective search space: 9171664271640
effective search space used: 9171664271640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)