Clone Name | rbah63o02 |
---|---|
Clone Library Name | barley_pub |
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 380 ccgccgccggtgccggcgtcgccg 403 |||||||||||||||||||||||| Sbjct: 1191413 ccgccgccggtgccggcgtcgccg 1191436
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 380 ccgccgccggtgccggcgtcgccg 403 |||||||||||||||||||||||| Sbjct: 157580 ccgccgccggtgccggcgtcgccg 157603
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 380 ccgccgccggtgccggcgtcgccg 403 |||||||||||||||||||||||| Sbjct: 205535 ccgccgccggtgccggcgtcgccg 205558
>gb|AY722928.1| Borrelia garinii PBi variable plasmid segment G1Mb03b12.r1, WORKING DRAFT SEQUENCE Length = 5982 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 436 ctggtggtgatgctgcggatgttggt 461 |||||||||||||||||||| ||||| Sbjct: 795 ctggtggtgatgctgcggattttggt 820
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 gccgccggtgccggcgtcgccg 403 |||||||||||||||||||||| Sbjct: 4355751 gccgccggtgccggcgtcgccg 4355730
>ref|XM_482484.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1278 Score = 42.1 bits (21), Expect = 1.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 378 acccgccgccggtgccggcgtcgccgtanccg 409 |||||||||||| ||||||| ||||||| ||| Sbjct: 733 acccgccgccggcgccggcgccgccgtagccg 702
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 ccctgaggacgacgaagaccc 381 ||||||||||||||||||||| Sbjct: 525908 ccctgaggacgacgaagaccc 525928
>ref|XM_571517.1| Cryptococcus neoformans var. neoformans JEC21 5'-3' exoribonuclease (CNF01810) partial mRNA Length = 3625 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 ccctgaggacgacgaagaccc 381 ||||||||||||||||||||| Sbjct: 1887 ccctgaggacgacgaagaccc 1907
>emb|AL035448.29|HS742J24 Human DNA sequence from clone RP4-742J24 on chromosome 20p11.23-12.3 Contains the BTBD3 gene for BTB (POZ) domain containing 3 (KIAA0952), a novel gene and a CpG island, complete sequence Length = 167075 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 cattaatttttgtatgtaaat 116 ||||||||||||||||||||| Sbjct: 77324 cattaatttttgtatgtaaat 77304
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 371 gacgaagacccgccgccggtgccgg 395 ||||||| ||||||||||||||||| Sbjct: 153271 gacgaagccccgccgccggtgccgg 153247
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 378 acccgccgccggtgccggcgtcgccgtanccg 409 |||||||||||| ||||||| ||||||| ||| Sbjct: 20522191 acccgccgccggcgccggcgccgccgtagccg 20522160
>dbj|AP005734.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0032E15 Length = 120419 Score = 42.1 bits (21), Expect = 1.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 378 acccgccgccggtgccggcgtcgccgtanccg 409 |||||||||||| ||||||| ||||||| ||| Sbjct: 26152 acccgccgccggcgccggcgccgccgtagccg 26121
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 42.1 bits (21), Expect = 1.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 378 acccgccgccggtgccggcgtcgccgtanccg 409 |||||||||||| ||||||| ||||||| ||| Sbjct: 152821 acccgccgccggcgccggcgccgccgtagccg 152790
>gb|BT024038.1| Zea mays clone EL01N0428D04 mRNA sequence Length = 1868 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 ccgccggtgccggcgtcgccg 403 ||||||||||||||||||||| Sbjct: 153 ccgccggtgccggcgtcgccg 173
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 cattaatttttgtatgtaaat 116 ||||||||||||||||||||| Sbjct: 286567 cattaatttttgtatgtaaat 286547
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 378 acccgccgccggtgccggcgtcgccgtanccg 409 |||||||||| |||||||||||||||| ||| Sbjct: 124270 acccgccgcccatgccggcgtcgccgtagccg 124301
>gb|AC084380.9| Oryza sativa chromosome 3 BAC OSJNBa0090P23 genomic sequence, complete sequence Length = 126163 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 acgacgaagacccgccgccg 388 |||||||||||||||||||| Sbjct: 95099 acgacgaagacccgccgccg 95118
>ref|NM_120156.3| Arabidopsis thaliana unknown protein AT4G39930 mRNA, complete cds Length = 641 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tcagtagcccatttacaatt 144 |||||||||||||||||||| Sbjct: 110 tcagtagcccatttacaatt 129
>ref|XM_472953.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1704 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 381 cgccgccggtgccggcgtcgccgt 404 ||||||| |||||||||||||||| Sbjct: 1233 cgccgcccgtgccggcgtcgccgt 1256
>ref|NM_184616.1| Oryza sativa (japonica cultivar-group), mRNA Length = 801 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 acgacgaagacccgccgccg 388 |||||||||||||||||||| Sbjct: 460 acgacgaagacccgccgccg 479
>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome Length = 1913428 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 gctggtagtgctaattgagaatga 194 ||||||||| |||||||||||||| Sbjct: 827694 gctggtagtcctaattgagaatga 827717
>gb|BT015096.1| Arabidopsis thaliana At4g39930 gene, complete cds Length = 351 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tcagtagcccatttacaatt 144 |||||||||||||||||||| Sbjct: 28 tcagtagcccatttacaatt 47
>gb|AC119382.7| Rattus norvegicus 4 BAC CH230-125G2 (Children's Hospital Oakland Research Institute) complete sequence Length = 189442 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 ttgcctgccaaaccctgagg 368 |||||||||||||||||||| Sbjct: 142535 ttgcctgccaaaccctgagg 142554
>gb|BT012517.1| Arabidopsis thaliana At4g39930 gene, complete cds Length = 641 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tcagtagcccatttacaatt 144 |||||||||||||||||||| Sbjct: 110 tcagtagcccatttacaatt 129
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 acgacgaagacccgccgccg 388 |||||||||||||||||||| Sbjct: 16169920 acgacgaagacccgccgccg 16169939
>emb|Z92543.1|HS271G9 Human DNA sequence from clone RP1-271G9 on chromosome 6q22, complete sequence Length = 120376 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 agaatgaaattgactgactt 207 |||||||||||||||||||| Sbjct: 115232 agaatgaaattgactgactt 115251
>emb|AL645819.1| Human DNA sequence from clone RP1-256K24 on chromosome X, complete sequence Length = 94973 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tgccattaatttttgtatgt 112 |||||||||||||||||||| Sbjct: 17829 tgccattaatttttgtatgt 17848
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 gccgccggtgccggcgtcgc 401 |||||||||||||||||||| Sbjct: 1663595 gccgccggtgccggcgtcgc 1663614
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 ccgccgccggtgccggcgtcgccg 403 |||||||||||| ||||||||||| Sbjct: 179533 ccgccgccggtgtcggcgtcgccg 179556
>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete sequence Length = 141128 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 cgccgccggtgccggcgtcgccgt 404 ||||||| |||||||||||||||| Sbjct: 18156 cgccgcccgtgccggcgtcgccgt 18133
>emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 92 Length = 112067 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tcagtagcccatttacaatt 144 |||||||||||||||||||| Sbjct: 45893 tcagtagcccatttacaatt 45874
>emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project) Length = 118267 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tcagtagcccatttacaatt 144 |||||||||||||||||||| Sbjct: 56460 tcagtagcccatttacaatt 56441
>emb|BX544881.7| Zebrafish DNA sequence from clone DKEY-64F15 in linkage group 14, complete sequence Length = 163842 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 atgtaaatgcaccttgtcag 128 |||||||||||||||||||| Sbjct: 22938 atgtaaatgcaccttgtcag 22957
>gb|AC104701.5| Homo sapiens BAC clone RP11-772N1 from 4, complete sequence Length = 152547 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 taatttttgtatgtaaatgc 118 |||||||||||||||||||| Sbjct: 68370 taatttttgtatgtaaatgc 68389
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 cgccgccggtgccggcgtcgccgt 404 ||||||| |||||||||||||||| Sbjct: 24301745 cgccgcccgtgccggcgtcgccgt 24301722
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 acgacgaagacccgccgccg 388 |||||||||||||||||||| Sbjct: 16164453 acgacgaagacccgccgccg 16164472
>emb|BX537115.11| Zebrafish DNA sequence from clone CH211-207B20 in linkage group 14, complete sequence Length = 192331 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 atgtaaatgcaccttgtcag 128 |||||||||||||||||||| Sbjct: 17018 atgtaaatgcaccttgtcag 17037
>emb|AJ329266.1|HSA329266 Homo sapiens genomic sequence surrounding NotI site, clone NL4-AL19R Length = 735 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gcgccttcaggtgaccacag 59 |||||||||||||||||||| Sbjct: 351 gcgccttcaggtgaccacag 370
>emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0302E05, complete sequence Length = 61795 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 cgccgccggtgccggcgtcgccgt 404 ||||||| |||||||||||||||| Sbjct: 30038 cgccgcccgtgccggcgtcgccgt 30015
>emb|AL121654.1|CNS01DS4 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 26F21 of library CITB_978_SKB from chromosome 2 of Homo sapiens (Human) Length = 153624 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 attaatttttgtatgtaaat 116 |||||||||||||||||||| Sbjct: 104423 attaatttttgtatgtaaat 104442
>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome Length = 1830138 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 gctggtagtgctaattgagaatga 194 ||||||||| |||||||||||||| Sbjct: 646736 gctggtagtcctaattgagaatga 646759
>emb|Z72005.1|HSJ256K2B Human DNA sequence from cosmid J256K24, between markers DXS6791 and DXS8038 on chromosome X contains EST Length = 31252 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tgccattaatttttgtatgt 112 |||||||||||||||||||| Sbjct: 13424 tgccattaatttttgtatgt 13405 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,461,909 Number of Sequences: 3902068 Number of extensions: 4461909 Number of successful extensions: 102688 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102145 Number of HSP's gapped (non-prelim): 543 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)