ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63n22 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase Length = 1710 Score = 795 bits (401), Expect = 0.0 Identities = 419/425 (98%) Strand = Plus / Minus Query: 5 aagcccaattccgtgttgaagaacgagtttaattttgatataaggttacattattttcag 64 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1710 aagccaaattccgtgttgaagaacgagtttaattttgatataaggttacattattttcag 1651 Query: 65 ctccacgcagtttgtttacagggttcattgcatggaggcctaactatagaacatcgcctg 124 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1650 ctccacgcagtttgtttacagggttcactgcatggaggcctaactatagaacatcgcctg 1591 Query: 125 tagtgacgaggacggctgggcgttccaagggcgcgctcttgcttttttattcctagaacc 184 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1590 tagtgacgaggacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaacc 1531 Query: 185 gtgggccgccatctacagagcggattggaacagcatctcagccaattcctgtttgcccga 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1530 gtgggccgccatctacagagcggattggaacagcatctcagccaattcctgtttgcccga 1471 Query: 245 tggaacggttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgccctt 304 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1470 tggaacggttggctcgccccactccaaggccttcttttctagcgtttcaaagtcgccctt 1411 Query: 305 cccagcctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaag 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1410 cccagcctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaag 1351 Query: 365 ctcgtccagggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggt 424 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 1350 ctcgtccagggaaccatcctcaatcagcttgacaacattgcggcggccgcgggccatggt 1291 Query: 425 gtcca 429 ||||| Sbjct: 1290 gtcca 1286
>emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene Length = 4473 Score = 434 bits (219), Expect = e-118 Identities = 228/231 (98%) Strand = Plus / Minus Query: 5 aagcccaattccgtgttgaagaacgagtttaattttgatataaggttacattattttcag 64 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4473 aagccaaattccgtgttgaagaacgagtttaattttgatataaggttacattattttcag 4414 Query: 65 ctccacgcagtttgtttacagggttcattgcatggaggcctaactatagaacatcgcctg 124 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 4413 ctccacgcagtttgtttacagggttcactgcatggaggcctaactatagaacatcgcctg 4354 Query: 125 tagtgacgaggacggctgggcgttccaagggcgcgctcttgcttttttattcctagaacc 184 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 4353 tagtgacgaggacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaacc 4294 Query: 185 gtgggccgccatctacagagcggattggaacagcatctcagccaattcctg 235 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4293 gtgggccgccatctacagagcggattggaacagcatctcagccaattcctg 4243 Score = 153 bits (77), Expect = 6e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 232 cctgtttgcccgatggaacggttggctcgccccactccaagaccttcttttctagcgttt 291 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 4135 cctgtttgcccgatggaacggttggctcgccccactccaaggccttcttttctagcgttt 4076 Query: 292 caaagtcgcccttcccagcct 312 ||||||||||||||||||||| Sbjct: 4075 caaagtcgcccttcccagcct 4055 Score = 149 bits (75), Expect = 9e-33 Identities = 75/75 (100%) Strand = Plus / Minus Query: 310 cctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgt 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3976 cctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgt 3917 Query: 370 ccagggaaccatcct 384 ||||||||||||||| Sbjct: 3916 ccagggaaccatcct 3902 Score = 79.8 bits (40), Expect = 7e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 382 cctcaatcagcttggcaacattgcggaggccgcgggccatggtgtcca 429 |||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 3818 cctcaatcagcttgacaacattgcggcggccgcgggccatggtgtcca 3771
>gb|BT018392.1| Zea mays clone EL01N0319D07.d mRNA sequence Length = 1548 Score = 206 bits (104), Expect = 4e-50 Identities = 191/220 (86%) Strand = Plus / Minus Query: 210 tggaacagcatctcagccaattcctgtttgcccgatggaacggttggctcgccccactcc 269 |||||||| ||||| |||| |||||||||||| |||| ||| || ||||| |||||||| Sbjct: 1260 tggaacagaatctccgccagttcctgtttgccggatgcaacagtgggctcaccccactct 1201 Query: 270 aagaccttcttttctagcgtttcaaagtcgcccttcccagcctcgatcatggcaccaatc 329 | ||||||||||||||||| |||||||| || |||||||||||||||| |||||||||| Sbjct: 1200 agaaccttcttttctagcgtctcaaagtctcctttcccagcctcgatcaaggcaccaatc 1141 Query: 330 tcagtgtcaaagctctggtagcgtttgcgtacaagctcgtccagggaaccatcctcaatc 389 ||| | |||||||||||||| || ||||| ||||| || || |||||||||||||||||| Sbjct: 1140 tcactatcaaagctctggtaccgcttgcggacaagatcatctagggaaccatcctcaatc 1081 Query: 390 agcttggcaacattgcggaggccgcgggccatggtgtcca 429 ||||||||||| || || ||||| || |||| |||||||| Sbjct: 1080 agcttggcaacgttacgaaggccacgtgccagggtgtcca 1041
>gb|AY104014.1| Zea mays PCO103489 mRNA sequence Length = 2135 Score = 206 bits (104), Expect = 4e-50 Identities = 191/220 (86%) Strand = Plus / Minus Query: 210 tggaacagcatctcagccaattcctgtttgcccgatggaacggttggctcgccccactcc 269 |||||||| ||||| |||| |||||||||||| |||| ||| || ||||| |||||||| Sbjct: 1838 tggaacagaatctccgccagttcctgtttgccggatgcaacagtgggctcaccccactct 1779 Query: 270 aagaccttcttttctagcgtttcaaagtcgcccttcccagcctcgatcatggcaccaatc 329 | ||||||||||||||||| |||||||| || |||||||||||||||| |||||||||| Sbjct: 1778 agaaccttcttttctagcgtctcaaagtctcctttcccagcctcgatcaaggcaccaatc 1719 Query: 330 tcagtgtcaaagctctggtagcgtttgcgtacaagctcgtccagggaaccatcctcaatc 389 ||| | |||||||||||||| || ||||| ||||| || || |||||||||||| ||||| Sbjct: 1718 tcactatcaaagctctggtaccgcttgcggacaagatcatctagggaaccatccccaatc 1659 Query: 390 agcttggcaacattgcggaggccgcgggccatggtgtcca 429 ||||||||||| || |||||||| || |||| |||||||| Sbjct: 1658 agcttggcaacgttacggaggccacgtgccagggtgtcca 1619
>ref|XM_479446.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1760 Score = 192 bits (97), Expect = 6e-46 Identities = 202/237 (85%) Strand = Plus / Minus Query: 193 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 252 ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| |||||||| Sbjct: 1550 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 1491 Query: 253 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 312 | || || |||||||||| |||||||| ||||| || || ||||| || |||||||||| Sbjct: 1490 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 1431 Query: 313 cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 372 | |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 1430 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 1371 Query: 373 gggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggtgtcca 429 ||||||||||||| ||||||||| ||||||| || ||||||||||| | |||||||| Sbjct: 1370 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtcca 1314
>gb|AF358766.1| Oryza sativa clone Osl369 xylose isomerase mRNA, partial cds Length = 415 Score = 192 bits (97), Expect = 6e-46 Identities = 202/237 (85%) Strand = Plus / Minus Query: 193 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 252 ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| |||||||| Sbjct: 277 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 218 Query: 253 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 312 | || || |||||||||| |||||||| ||||| || || ||||| || |||||||||| Sbjct: 217 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 158 Query: 313 cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 372 | |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 157 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 98 Query: 373 gggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggtgtcca 429 ||||||||||||| ||||||||| ||||||| || ||||||||||| | |||||||| Sbjct: 97 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtcca 41
>dbj|AK104085.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F02, full insert sequence Length = 1177 Score = 192 bits (97), Expect = 6e-46 Identities = 202/237 (85%) Strand = Plus / Minus Query: 193 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 252 ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| |||||||| Sbjct: 960 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 901 Query: 253 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 312 | || || |||||||||| |||||||| ||||| || || ||||| || |||||||||| Sbjct: 900 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 841 Query: 313 cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 372 | |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 840 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 781 Query: 373 gggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggtgtcca 429 ||||||||||||| ||||||||| ||||||| || ||||||||||| | |||||||| Sbjct: 780 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtcca 724
>dbj|AK072249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001E09, full insert sequence Length = 1760 Score = 192 bits (97), Expect = 6e-46 Identities = 202/237 (85%) Strand = Plus / Minus Query: 193 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 252 ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| |||||||| Sbjct: 1550 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 1491 Query: 253 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 312 | || || |||||||||| |||||||| ||||| || || ||||| || |||||||||| Sbjct: 1490 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 1431 Query: 313 cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 372 | |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| |||| Sbjct: 1430 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 1371 Query: 373 gggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggtgtcca 429 ||||||||||||| ||||||||| ||||||| || ||||||||||| | |||||||| Sbjct: 1370 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtcca 1314
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 310 cctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgt 369 |||| |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| | Sbjct: 28219317 cctcaatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcat 28219376 Query: 370 ccagggaaccatcct 384 ||||||||||||||| Sbjct: 28219377 ccagggaaccatcct 28219391 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 382 cctcaatcagcttggcaacattgcggaggccgcgggccatggtgtcca 429 |||| ||||||||| ||||||| || ||||||||||| | |||||||| Sbjct: 28219467 cctcgatcagcttgacaacattccgaaggccgcgggctagggtgtcca 28219514
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 310 cctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgt 369 |||| |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| | Sbjct: 74862 cctcaatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcat 74921 Query: 370 ccagggaaccatcct 384 ||||||||||||||| Sbjct: 74922 ccagggaaccatcct 74936 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 382 cctcaatcagcttggcaacattgcggaggccgcgggccatggtgtcca 429 |||| ||||||||| ||||||| || ||||||||||| | |||||||| Sbjct: 75012 cctcgatcagcttgacaacattccgaaggccgcgggctagggtgtcca 75059
>gb|AC162883.4| Mus musculus chromosome 1, clone RP24-148E21, complete sequence Length = 154199 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 catggcaccaatctcagtgtcaaag 341 |||||||||| |||||||||||||| Sbjct: 84035 catggcaccagtctcagtgtcaaag 84011
>gb|AC149305.19| Medicago truncatula clone mth2-78k4, complete sequence Length = 118017 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 aacgagtttaattttgatata 46 ||||||||||||||||||||| Sbjct: 91024 aacgagtttaattttgatata 91004
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 ctcgtccagggaaccatcctc 385 ||||||||||||||||||||| Sbjct: 1075951 ctcgtccagggaaccatcctc 1075931
>gb|BC041267.1| Xenopus laevis actin related protein 2/3 complex, subunit 1A, 41kDa, mRNA (cDNA clone MGC:52839 IMAGE:4885217), complete cds Length = 1795 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 ttacattattttcagctcca 69 |||||||||||||||||||| Sbjct: 1510 ttacattattttcagctcca 1529
>ref|XM_784544.1| PREDICTED: Strongylocentrotus purpuratus similar to Retrovirus-related Pol polyprotein from transposon 297 (LOC584692), partial mRNA Length = 1789 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ttattttcagctccacgcag 74 |||||||||||||||||||| Sbjct: 1373 ttattttcagctccacgcag 1354
>emb|CR936947.2| Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE Length = 136310 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 gaagaacgagtttaattttgatat 45 |||||| ||||||||||||||||| Sbjct: 131309 gaagaatgagtttaattttgatat 131332
>gb|AC116303.6| Homo sapiens 3 BAC RP11-276B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51070 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gctcttgcttttttattcct 178 |||||||||||||||||||| Sbjct: 21516 gctcttgcttttttattcct 21535
>gb|AC104791.3| Homo sapiens BAC clone RP11-181K12 from 4, complete sequence Length = 159969 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gctcttgcttttttattcct 178 |||||||||||||||||||| Sbjct: 112812 gctcttgcttttttattcct 112831
>emb|CT573055.2| Medicago truncatula chromosome 5 clone mth2-75o19, COMPLETE SEQUENCE Length = 121343 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 gaagaacgagtttaattttgatat 45 |||||| ||||||||||||||||| Sbjct: 98805 gaagaatgagtttaattttgatat 98782
>emb|AL845436.7| Mouse DNA sequence from clone RP23-299N13 on chromosome 2, complete sequence Length = 126095 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cagccaattcctgtttgccc 242 |||||||||||||||||||| Sbjct: 43989 cagccaattcctgtttgccc 44008 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,215,068 Number of Sequences: 3902068 Number of extensions: 3215068 Number of successful extensions: 58956 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58882 Number of HSP's gapped (non-prelim): 74 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
