ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63n21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L36959.1|BLYCA Hordeum vulgare carbonic anhydrase mRNA, compl... 779 0.0
2ref|NM_192260.1| Oryza sativa (japonica cultivar-group), predic... 212 7e-52
3dbj|AK099825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 7e-52
4dbj|AK060890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 7e-52
5gb|AF182806.1|AF182806 Oryza sativa carbonic anhydrase 3 mRNA, c... 212 7e-52
6gb|U08404.1|OSU08404 Oryza sativa chloroplast carbonic anhydrase... 212 7e-52
7gb|AY109272.1| Zea mays PCO064414 mRNA sequence 159 9e-36
8gb|U08403.1|ZMU08403 Zea mays Golden Bantam carbonic anhydrase m... 133 5e-28
9gb|U08401.1|ZMU08401 Zea mays carbonic anhydrase mRNA, complete cds 133 5e-28
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
11dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
12dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
13gb|U19741.1|UPU19741 Urochloa panicoides carbonic anhydrase 1 mR... 125 1e-25
14gb|U19739.1|UPU19739 Urochloa panicoides carbonic anhydrase 2 mR... 125 1e-25
15dbj|AB016283.1| Oryza sativa gene for carbonic anhydrase, comple... 125 1e-25
16gb|AY109373.1| Zea mays CL2331_1 mRNA sequence 105 1e-19
17gb|M95073.1|MZEORFN Zea mays putative carbonic anhydrase homolog... 98 3e-17
18dbj|AP002373.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.4
19dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.4
20ref|XM_467687.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
21ref|NM_196639.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.5
22gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6... 40 5.5
23emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M... 40 5.5
24gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
25dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
28gb|AC018887.10| Homo sapiens BAC clone RP11-419E14 from 2, compl... 40 5.5
29dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
30dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
31dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
32dbj|AK108113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
33emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.5
34gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
35gb|AF018256.1|AF018256 Ambystoma tigrinum glutamate transporter ... 40 5.5

>gb|L36959.1|BLYCA Hordeum vulgare carbonic anhydrase mRNA, complete cds
          Length = 1529

 Score =  779 bits (393), Expect = 0.0
 Identities = 393/393 (100%)
 Strand = Plus / Minus

                                                                        
Query: 21   ggttctattgcttatggcaaattcacatcgggccatccggcatccagtactggacaataa 80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 ggttctattgcttatggcaaattcacatcgggccatccggcatccagtactggacaataa 1318

                                                                        
Query: 81   cgggtacgcactcccatggcattgcattcacatcgatcggacgatatcttgatatatgta 140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 cgggtacgcactcccatggcattgcattcacatcgatcggacgatatcttgatatatgta 1258

                                                                        
Query: 141  cgtttgtatatgtcggagttaaccggtggggaagatttactgctcccatgtttcgaactt 200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 cgtttgtatatgtcggagttaaccggtggggaagatttactgctcccatgtttcgaactt 1198

                                                                        
Query: 201  gccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctc 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 gccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctc 1138

                                                                        
Query: 261  cttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccag 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 cttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccag 1078

                                                                        
Query: 321  gacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttggc 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 gacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttggc 1018

                                             
Query: 381  cgggaacccgatcctgacccagtcctcaacgaa 413
            |||||||||||||||||||||||||||||||||
Sbjct: 1017 cgggaacccgatcctgacccagtcctcaacgaa 985



to top

>ref|NM_192260.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 819

 Score =  212 bits (107), Expect = 7e-52
 Identities = 188/215 (87%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 258
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 797 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 738

                                                                       
Query: 259 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 318
           |||||||||||||||||||||  ||||||||  |||||   ||| |||||||||||||||
Sbjct: 737 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 678

                                                                       
Query: 319 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 378
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 677 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 618

                                              
Query: 379 gccgggaacccgatcctgacccagtcctcaacgaa 413
           || ||||| ||| |||||||||||||||| |||||
Sbjct: 617 gcggggaaaccggtcctgacccagtcctcgacgaa 583



to top

>dbj|AK099825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102G17, full
           insert sequence
          Length = 1163

 Score =  212 bits (107), Expect = 7e-52
 Identities = 188/215 (87%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 258
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 847 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 788

                                                                       
Query: 259 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 318
           |||||||||||||||||||||  ||||||||  |||||   ||| |||||||||||||||
Sbjct: 787 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 728

                                                                       
Query: 319 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 378
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 727 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 668

                                              
Query: 379 gccgggaacccgatcctgacccagtcctcaacgaa 413
           || ||||| ||| |||||||||||||||| |||||
Sbjct: 667 gcggggaaaccggtcctgacccagtcctcgacgaa 633



to top

>dbj|AK060890.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B12, full
           insert sequence
          Length = 1165

 Score =  212 bits (107), Expect = 7e-52
 Identities = 188/215 (87%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 258
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 846 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 787

                                                                       
Query: 259 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 318
           |||||||||||||||||||||  ||||||||  |||||   ||| |||||||||||||||
Sbjct: 786 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 727

                                                                       
Query: 319 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 378
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 726 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 667

                                              
Query: 379 gccgggaacccgatcctgacccagtcctcaacgaa 413
           || ||||| ||| |||||||||||||||| |||||
Sbjct: 666 gcggggaaaccggtcctgacccagtcctcgacgaa 632



to top

>gb|AF182806.1|AF182806 Oryza sativa carbonic anhydrase 3 mRNA, complete cds
          Length = 1169

 Score =  212 bits (107), Expect = 7e-52
 Identities = 188/215 (87%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 258
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 841 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 782

                                                                       
Query: 259 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 318
           |||||||||||||||||||||  ||||||||  |||||   ||| |||||||||||||||
Sbjct: 781 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 722

                                                                       
Query: 319 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 378
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 721 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 662

                                              
Query: 379 gccgggaacccgatcctgacccagtcctcaacgaa 413
           || ||||| ||| |||||||||||||||| |||||
Sbjct: 661 gcggggaaaccggtcctgacccagtcctcgacgaa 627



to top

>gb|U08404.1|OSU08404 Oryza sativa chloroplast carbonic anhydrase mRNA, complete cds
          Length = 1148

 Score =  212 bits (107), Expect = 7e-52
 Identities = 188/215 (87%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 258
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 832 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 773

                                                                       
Query: 259 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 318
           |||||||||||||||||||||  ||||||||  |||||   ||| |||||||||||||||
Sbjct: 772 tccttgacgaacgggtaggtcttgaggttctccagggattggttcacggcctccttctcc 713

                                                                       
Query: 319 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 378
           | || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||||||||||
Sbjct: 712 aagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaaccttcttcttg 653

                                              
Query: 379 gccgggaacccgatcctgacccagtcctcaacgaa 413
           || ||||| ||| |||||||||||||||| |||||
Sbjct: 652 gcggggaaaccggtcctgacccagtcctcgacgaa 618



to top

>gb|AY109272.1| Zea mays PCO064414 mRNA sequence
          Length = 978

 Score =  159 bits (80), Expect = 9e-36
 Identities = 179/212 (84%)
 Strand = Plus / Minus

                                                                       
Query: 202 ccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctcc 261
           ||||| ||||||||||||||| ||||||| ||||||||||| || |||| ||  || |||
Sbjct: 719 ccggacacgaagtcgtagtgggcgccgaccagcttgagggtccccttggccagcccttcc 660

                                                                       
Query: 262 ttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccagg 321
           | |||||| |||||||||  ||||||||  ||||||||||| ||||||||||||||||||
Sbjct: 659 tggacgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctccagg 600

                                                                       
Query: 322 acggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttggcc 381
           | || ||||||||||||||| |||| |||||||  |||  ||| ||||||   |||||| 
Sbjct: 599 atggagcactggtcatcgaagggcacggaggcgtgctctttcttcaccttgaccttggca 540

                                           
Query: 382 gggaacccgatcctgacccagtcctcaacgaa 413
           ||||| |||||| ||||||||| ||| |||||
Sbjct: 539 gggaagccgatcttgacccagttctcgacgaa 508



to top

>gb|U08403.1|ZMU08403 Zea mays Golden Bantam carbonic anhydrase mRNA, complete cds
          Length = 2184

 Score =  133 bits (67), Expect = 5e-28
 Identities = 133/155 (85%)
 Strand = Plus / Minus

                                                                       
Query: 259 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 318
           ||||||||||| |||||| ||  |||||||||||| |||||||| |||||||||||||||
Sbjct: 671 tccttgacgaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 612

                                                                       
Query: 319 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 378
           |||| || ||||||||||||||| |||| ||| |||  |||  ||| |||||| ||||||
Sbjct: 611 aggatggagcactggtcatcgaacggcacggacgcgtgctctttcttcaccttgttcttg 552

                                              
Query: 379 gccgggaacccgatcctgacccagtcctcaacgaa 413
           || |||   |||||||||||||||||||| |||||
Sbjct: 551 gcagggctgccgatcctgacccagtcctccacgaa 517



 Score =  125 bits (63), Expect = 1e-25
 Identities = 132/155 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 318
            |||||||| || |||||| ||  |||||||||||| |||||||| |||||||||||||||
Sbjct: 1277 tccttgaccaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 1218

                                                                        
Query: 319  aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 378
            |||| || ||||||||||||||| |||| ||| |||  |||  ||| |||||| ||||||
Sbjct: 1217 aggatggagcactggtcatcgaacggcacggacgcgtgctctttcttcaccttgttcttg 1158

                                               
Query: 379  gccgggaacccgatcctgacccagtcctcaacgaa 413
            || |||   |||||||||||||||||||| |||||
Sbjct: 1157 gcagggctgccgatcctgacccagtcctccacgaa 1123



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 205  gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 264
            ||||| |||||||||||| ||||||  ||||||||||| || || |  |  || ||||||
Sbjct: 1934 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1875

                                                                        
Query: 265  acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacg 324
            ||||| |||||||||  ||||||||  ||||||||||| |||||||||||||| || | |
Sbjct: 1874 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1815

                                  
Query: 325  gtgcactggtcatcgaaaggca 346
            |  |||||||||||||| ||||
Sbjct: 1814 gaccactggtcatcgaacggca 1793



to top

>gb|U08401.1|ZMU08401 Zea mays carbonic anhydrase mRNA, complete cds
          Length = 1920

 Score =  133 bits (67), Expect = 5e-28
 Identities = 133/155 (85%)
 Strand = Plus / Minus

                                                                       
Query: 259 tccttgacgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctcc 318
           ||||||||||| |||||| ||  |||||||||||| |||||||| |||||||||||||||
Sbjct: 950 tccttgacgaaggggtagctcttgaggttctggagcgacacgttcacggcctccttctcc 891

                                                                       
Query: 319 aggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttg 378
           |||| || ||||||||||||||| |||| ||| |||  |||  ||| |||||| ||||||
Sbjct: 890 aggatggagcactggtcatcgaacggcacggacgcgtgctctttcttcaccttgttcttg 831

                                              
Query: 379 gccgggaacccgatcctgacccagtcctcaacgaa 413
           || |||   |||||||||||||||||||| |||||
Sbjct: 830 gcagggctgccgatcctgacccagtcctccacgaa 796



 Score =  105 bits (53), Expect = 1e-19
 Identities = 170/209 (81%)
 Strand = Plus / Minus

                                                                        
Query: 205  gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 264
            ||||| |||||||||||| ||||||  ||||||||||| || || |  |  || ||||||
Sbjct: 1610 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1551

                                                                        
Query: 265  acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacg 324
            ||||| |||||||||  ||||||||  ||||||||||| |||||||||||||| || | |
Sbjct: 1550 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1491

                                                                        
Query: 325  gtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttggccggg 384
            | ||||||||||||||| ||||  ||||||  |||  |||  |||||| |||||||   |
Sbjct: 1490 gagcactggtcatcgaacggcaccgaggcgtgctctttctttaccttcatcttggcaatg 1431

                                         
Query: 385  aacccgatcctgacccagtcctcaacgaa 413
            || |||||| | ||||||||||| |||||
Sbjct: 1430 aagccgatcttaacccagtcctcgacgaa 1402



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 1e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                            
Query: 199      ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 258
                |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 25698466 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 25698407

                                               
Query: 259      tccttgacgaacgggtaggtcaagaggttct 289
                |||||||||||||||||||||  ||||||||
Sbjct: 25698406 tccttgacgaacgggtaggtcttgaggttct 25698376



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                            
Query: 311      ccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcacct 370
                ||||||||| || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||
Sbjct: 25698164 ccttctccaagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaacct 25698105

                                                           
Query: 371      tcttcttggccgggaacccgatcctgacccagtcctcaacgaa 413
                |||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct: 25698104 tcttcttggcggggaaaccggtcctgacccagtcctcgacgaa 25698062



to top

>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0004A09
          Length = 158826

 Score =  125 bits (63), Expect = 1e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                          
Query: 199    ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 258
              |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 145272 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 145213

                                             
Query: 259    tccttgacgaacgggtaggtcaagaggttct 289
              |||||||||||||||||||||  ||||||||
Sbjct: 145212 tccttgacgaacgggtaggtcttgaggttct 145182



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                          
Query: 311    ccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcacct 370
              ||||||||| || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||
Sbjct: 144970 ccttctccaagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaacct 144911

                                                         
Query: 371    tcttcttggccgggaacccgatcctgacccagtcctcaacgaa 413
              |||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct: 144910 tcttcttggcggggaaaccggtcctgacccagtcctcgacgaa 144868



to top

>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0039G05
          Length = 138429

 Score =  125 bits (63), Expect = 1e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 258
           |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 930 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 871

                                          
Query: 259 tccttgacgaacgggtaggtcaagaggttct 289
           |||||||||||||||||||||  ||||||||
Sbjct: 870 tccttgacgaacgggtaggtcttgaggttct 840



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                       
Query: 311 ccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcacct 370
           ||||||||| || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||
Sbjct: 628 ccttctccaagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaacct 569

                                                      
Query: 371 tcttcttggccgggaacccgatcctgacccagtcctcaacgaa 413
           |||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct: 568 tcttcttggcggggaaaccggtcctgacccagtcctcgacgaa 526



to top

>gb|U19741.1|UPU19741 Urochloa panicoides carbonic anhydrase 1 mRNA, complete cds
          Length = 1208

 Score =  125 bits (63), Expect = 1e-25
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                       
Query: 207 gacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgac 266
           |||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||| ||
Sbjct: 864 gacgaagtcgtagtggccgccgaccagcttgagggagccgttggacacaccttccttcac 805

                                                                       
Query: 267 gaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacggt 326
             | |||||||||| |||||| |  ||||| |||||||||||||||||||||| || || 
Sbjct: 804 ccaggggtaggtcaggaggttgtacagggagacgttgacggcctccttctccaagatgga 745

                          
Query: 327 gcactggtcatcgaa 341
           ||||||||| |||||
Sbjct: 744 gcactggtcgtcgaa 730



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 367 accttcttcttggccgggaacccgatcctgacccagtcctcaacgaa 413
           ||||||||||||||  |||| |||||||||||||||||||| |||||
Sbjct: 704 accttcttcttggcgaggaagccgatcctgacccagtcctcgacgaa 658



to top

>gb|U19739.1|UPU19739 Urochloa panicoides carbonic anhydrase 2 mRNA, complete cds
          Length = 1034

 Score =  125 bits (63), Expect = 1e-25
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                       
Query: 207 gacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttgac 266
           |||||||||||||||||||||||| ||||||||||  ||||||| ||| || ||||| ||
Sbjct: 703 gacgaagtcgtagtggccgccgaccagcttgagggacccgttggacacgccttccttcac 644

                                                                       
Query: 267 gaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacggt 326
             | |||||||||| |||||| | |||||| |||||||| ||||||||||||| || || 
Sbjct: 643 ccaggggtaggtcaggaggttgtagagggagacgttgactgcctccttctccaagatgga 584

                          
Query: 327 gcactggtcatcgaa 341
           |||||||||||||||
Sbjct: 583 gcactggtcatcgaa 569



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 367 accttcttcttggccgggaacccgatcctgacccagtcctcaacgaa 413
           ||||||||||| ||  |||| |||||||||||||| ||||| |||||
Sbjct: 543 accttcttcttcgcgaggaagccgatcctgacccaatcctcgacgaa 497



to top

>dbj|AB016283.1| Oryza sativa gene for carbonic anhydrase, complete cds
          Length = 8532

 Score =  125 bits (63), Expect = 1e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                        
Query: 199  ttgccggagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccc 258
            |||||||||||||||||||||||||||||||||||||||||||| |||||||  |  |||
Sbjct: 8047 ttgccggagacgaagtcgtagtggccgccgacgagcttgagggtgccgttggcgatcccc 7988

                                           
Query: 259  tccttgacgaacgggtaggtcaagaggttct 289
            |||||||||||||||||||||  ||||||||
Sbjct: 7987 tccttgacgaacgggtaggtcttgaggttct 7957



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                        
Query: 311  ccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgcacct 370
            ||||||||| || || ||| ||||||||||||||||  ||||||  ||| ||||| ||||
Sbjct: 7745 ccttctccaagatggcgcattggtcatcgaaaggcagcgaggcgtgctcggtctgaacct 7686

                                                       
Query: 371  tcttcttggccgggaacccgatcctgacccagtcctcaacgaa 413
            |||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct: 7685 tcttcttggcggggaaaccggtcctgacccagtcctcgacgaa 7643



to top

>gb|AY109373.1| Zea mays CL2331_1 mRNA sequence
          Length = 2552

 Score =  105 bits (53), Expect = 1e-19
 Identities = 170/209 (81%)
 Strand = Plus / Minus

                                                                        
Query: 205  gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 264
            ||||| |||||||||||| ||||||  ||||||||||| || || |  |  || ||||||
Sbjct: 1610 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 1551

                                                                        
Query: 265  acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacg 324
            ||||| |||||||||  ||||||||  ||||||||||| |||||||||||||| || | |
Sbjct: 1550 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 1491

                                                                        
Query: 325  gtgcactggtcatcgaaaggcatggaggcgcactcagtctgcaccttcttcttggccggg 384
            | ||||||||||||||| ||||  ||||||  |||  |||  |||||| |||||||   |
Sbjct: 1490 gagcactggtcatcgaacggcaccgaggcgtgctctttctttaccttcatcttggcaatg 1431

                                         
Query: 385  aacccgatcctgacccagtcctcaacgaa 413
            || |||||| | ||||||||||| |||||
Sbjct: 1430 aagccgatcttaacccagtcctcgacgaa 1402



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 90/106 (84%)
 Strand = Plus / Minus

                                                                       
Query: 308 cctccttctccaggacggtgcactggtcatcgaaaggcatggaggcgcactcagtctgca 367
           ||||||||||||||| || ||||||||||||||| |||| ||| |||  |||  ||| ||
Sbjct: 901 cctccttctccaggatggagcactggtcatcgaacggcacggacgcgtgctctttcttca 842

                                                         
Query: 368 ccttcttcttggccgggaacccgatcctgacccagtcctcaacgaa 413
           |||| |||||||| |||   |||||||||||||||||||| |||||
Sbjct: 841 ccttgttcttggcagggctgccgatcctgacccagtcctccacgaa 796



to top

>gb|M95073.1|MZEORFN Zea mays putative carbonic anhydrase homolog mRNA, partial cds
          Length = 210

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 115/137 (83%)
 Strand = Plus / Minus

                                                                       
Query: 205 gagacgaagtcgtagtggccgccgacgagcttgagggttccgttggtcacaccctccttg 264
           ||||| |||||||||||| ||||||  ||||||||||| || || |  |  || ||||||
Sbjct: 171 gagacaaagtcgtagtgggcgccgatcagcttgagggtcccatttgcaagcccttccttg 112

                                                                       
Query: 265 acgaacgggtaggtcaagaggttctggagggacacgttgacggcctccttctccaggacg 324
           ||||| |||||||||  ||||||||  ||||||||||| |||||||||||||| || | |
Sbjct: 111 acgaaggggtaggtcttgaggttctccagggacacgttcacggcctccttctcgagaatg 52

                            
Query: 325 gtgcactggtcatcgaa 341
           | |||||||||||||||
Sbjct: 51  gagcactggtcatcgaa 35



to top

>dbj|AP002373.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-212D19, complete
             sequence
          Length = 138197

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 133   tatatgtacgtttgtatatgt 153
             |||||||||||||||||||||
Sbjct: 80852 tatatgtacgtttgtatatgt 80872



to top

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 298     acgttgacggcctccttctccagga 322
               |||||||||||||||||| ||||||
Sbjct: 2833138 acgttgacggcctccttcgccagga 2833114



to top

>ref|XM_467687.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1138

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 ggccgccgacgagcttgagg 240
           ||||||||||||||||||||
Sbjct: 102 ggccgccgacgagcttgagg 121



to top

>ref|NM_196639.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0019M20.11), mRNA
          Length = 642

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 ggccgccgacgagcttgagg 240
           ||||||||||||||||||||
Sbjct: 189 ggccgccgacgagcttgagg 208



to top

>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete
              sequence
          Length = 252420

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 130    tgatatatgtacgtttgtatatgt 153
              |||||||||||| |||||||||||
Sbjct: 127219 tgatatatgtacatttgtatatgt 127196



to top

>emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M7 on chromosome 6p21.1-21.3
             Contains the 5' end of the gene for a novel protein
             (contains KIAA1880 and FLJ32945), a TRK-fused gene (TFG)
             pseudogene and a CpG island, complete sequence
          Length = 128216

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ttctattgcttatggcaaat 42
             ||||||||||||||||||||
Sbjct: 55862 ttctattgcttatggcaaat 55881



to top

>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20,
              complete sequence
          Length = 139421

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    ggccgccgacgagcttgagg 240
              ||||||||||||||||||||
Sbjct: 110220 ggccgccgacgagcttgagg 110239



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 221      ggccgccgacgagcttgagg 240
                ||||||||||||||||||||
Sbjct: 14930442 ggccgccgacgagcttgagg 14930461



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 221      ggccgccgacgagcttgagg 240
                ||||||||||||||||||||
Sbjct: 28350077 ggccgccgacgagcttgagg 28350096



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 221      ggccgccgacgagcttgagg 240
                ||||||||||||||||||||
Sbjct: 30832078 ggccgccgacgagcttgagg 30832097



to top

>gb|AC018887.10| Homo sapiens BAC clone RP11-419E14 from 2, complete sequence
          Length = 189466

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    atatatgtacgtttgtatat 151
              ||||||||||||||||||||
Sbjct: 169067 atatatgtacgtttgtatat 169048



to top

>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0661G04
          Length = 157292

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ggccgccgacgagcttgagg 240
             ||||||||||||||||||||
Sbjct: 62655 ggccgccgacgagcttgagg 62674



to top

>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0623A10
          Length = 156517

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    ggccgccgacgagcttgagg 240
              ||||||||||||||||||||
Sbjct: 148106 ggccgccgacgagcttgagg 148125



to top

>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ggccgccgacgagcttgagg 240
             ||||||||||||||||||||
Sbjct: 15655 ggccgccgacgagcttgagg 15674



to top

>dbj|AK108113.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C02, full
           insert sequence
          Length = 1138

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 ggccgccgacgagcttgagg 240
           ||||||||||||||||||||
Sbjct: 102 ggccgccgacgagcttgagg 121



to top

>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ggccgccgacgagcttgagg 240
             ||||||||||||||||||||
Sbjct: 59918 ggccgccgacgagcttgagg 59937



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 221      ggccgccgacgagcttgagg 240
                ||||||||||||||||||||
Sbjct: 14938683 ggccgccgacgagcttgagg 14938702



to top

>gb|AF018256.1|AF018256 Ambystoma tigrinum glutamate transporter 1 (sEAAT1) mRNA, complete
           cds
          Length = 1980

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 362 tctgcaccttcttcttggcc 381
           ||||||||||||||||||||
Sbjct: 265 tctgcaccttcttcttggcc 246


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,504,540
Number of Sequences: 3902068
Number of extensions: 2504540
Number of successful extensions: 41004
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40821
Number of HSP's gapped (non-prelim): 181
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top