ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63n16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase rec... 32 0.79
2NAK_ARATH (P43293) Probable serine/threonine-protein kinase NAK ... 29 5.1
3JIL1_DROME (Q9V3I5) Chromosomal serine/threonine-protein kinase ... 28 6.7
4SCN9A_HUMAN (Q15858) Sodium channel protein type 9 alpha subunit... 28 6.7

>SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor|
           precursor (EC 2.7.11.1) (S-receptor kinase) (SRK)
          Length = 849

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 411 VGLWCIQMRSRDRPTMSEVIEILEAGVDDLQMPSRPFFC 295
           +GL C+Q  +  RP MS V+ +  +   ++  P  P +C
Sbjct: 784 IGLLCVQELAEHRPAMSSVVWMFGSEATEIPQPKPPGYC 822



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>NAK_ARATH (P43293) Probable serine/threonine-protein kinase NAK (EC 2.7.11.1)|
          Length = 389

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -3

Query: 420 LCVVGLWCIQMRSRDRPTMSEVIEILE 340
           + V+ L CI + ++ RPTM+E+++ +E
Sbjct: 325 IAVLALDCISIDAKSRPTMNEIVKTME 351



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>JIL1_DROME (Q9V3I5) Chromosomal serine/threonine-protein kinase JIL-1 (EC|
           2.7.11.1)
          Length = 1207

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 402 WCIQMRSRDRPTMSEVI--EILEAGVDD 325
           WC+Q    DRPT+S+++  E L+ G +D
Sbjct: 865 WCLQRDPADRPTLSDILDSEWLQYGSND 892



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>SCN9A_HUMAN (Q15858) Sodium channel protein type 9 alpha subunit (Sodium channel|
            protein type IX alpha subunit) (Voltage-gated sodium
            channel alpha subunit Nav1.7) (Neuroendocrine sodium
            channel) (hNE-Na) (Peripheral sodium channel 1)
          Length = 1988

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 44   TEHLYWVGIVTTITFTDKCI 103
            TE LYW+ +V  I FT +C+
Sbjct: 1544 TEVLYWINVVFIILFTGECV 1563


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,488,695
Number of Sequences: 219361
Number of extensions: 667376
Number of successful extensions: 1932
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1932
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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