ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63n14 |
|---|---|
| Clone Library Name | barley_pub |
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 59.7 bits (143), Expect = 2e-09 Identities = 25/28 (89%), Positives = 28/28 (100%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNNILTSLKFH 164 TGVGP+QNLLDHL+DPVNNN+LTSLKFH Sbjct: 246 TGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/20 (80%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHLSDPVNNN Sbjct: 237 TGKGPLENLADHLSDPVNNN 256
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 230 TGKGPLENLADHLADPVNNN 249
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 175 TGKGPLENLADHLADPVNNN 194
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 243 TGKGPIENLADHLADPVNNN 262
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 235 TGKGPLENLADHLADPVNNN 254
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 235 TGKGPLENLADHLADPVNNN 254
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 235 TGKGPLENLADHLADPVNNN 254
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 235 TGKGPLENLADHLADPVNNN 254
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 235 TGKGPLENLADHLADPVNNN 254
>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein| (Chlorophyll a-b binding of LHCII type I protein) (CAB) (LHCP) (Fragment) Length = 124 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 93 TGKGPLENLADHLADPVNNN 112
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)| (LHCP) (Fragment) Length = 116 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 85 TGKGPLENLADHLADPVNNN 104
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 236 TGKGPLENLADHLADPVNNN 255
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 236 TGKGPLENLADHLADPVNNN 255
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP NL+DHL+DPVNNN Sbjct: 236 TGKGPLDNLVDHLADPVNNN 255
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 236 TGKGPLENLADHLADPVNNN 255
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 236 TGKGPLENLADHLADPVNNN 255
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 236 TGKGPLENLADHLADPVNNN 255
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 236 TGKGPLENLADHLADPVNNN 255
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 236 TGKGPLENLADHLADPVNNN 255
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 236 TGKGPIENLADHLADPVNNN 255
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 236 TGKGPIENLADHLADPVNNN 255
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 233 TGKGPIENLADHLTDPVNNN 252
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 233 TGKGPLENLADHLADPVNNN 252
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 233 TGKGPLENLADHLADPVNNN 252
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 224 TGKGPLENLADHLADPVNNN 243
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 238 TGKGPLENLADHLADPVNNN 257
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 197 TGKGPLENLADHLADPVNNN 216
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 247 TGKGPIENLADHLADPVNNN 266
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 247 TGKGPIENLADHLADPVNNN 266
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPVNNN Sbjct: 225 TGKGPLENLADHLADPVNNN 244
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 37.4 bits (85), Expect = 0.010 Identities = 14/20 (70%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPVNNN Sbjct: 234 TGKGPLENLADHIADPVNNN 253
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 37.4 bits (85), Expect = 0.010 Identities = 14/20 (70%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPVNNN Sbjct: 236 TGKGPLENLADHIADPVNNN 255
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 37.4 bits (85), Expect = 0.010 Identities = 14/20 (70%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPVNNN Sbjct: 236 TGKGPLENLADHIADPVNNN 255
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 37.4 bits (85), Expect = 0.010 Identities = 14/20 (70%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPVNNN Sbjct: 231 TGKGPLENLADHIADPVNNN 250
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 37.0 bits (84), Expect = 0.013 Identities = 15/20 (75%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL DPVNNN Sbjct: 236 TGKGPLENLADHLVDPVNNN 255
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 36.6 bits (83), Expect = 0.018 Identities = 14/20 (70%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL++PVNNN Sbjct: 214 TGKGPLENLADHLAEPVNNN 233
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 36.2 bits (82), Expect = 0.023 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNNIL 182 TG GPF+NLL HLSDP +N I+ Sbjct: 226 TGKGPFENLLQHLSDPWHNTIV 247
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 36.2 bits (82), Expect = 0.023 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNNILT 179 TG GP +NL HLSDP NN+LT Sbjct: 246 TGEGPVENLAKHLSDPFGNNLLT 268
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 35.4 bits (80), Expect = 0.039 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPV NN Sbjct: 234 TGKGPIENLFDHLADPVANN 253
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 35.4 bits (80), Expect = 0.039 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+ PVNNN Sbjct: 232 TGKGPLENLADHLAGPVNNN 251
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 35.4 bits (80), Expect = 0.039 Identities = 13/20 (65%), Positives = 17/20 (85%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP ++L DH++DPVNNN Sbjct: 235 TGKGPLEDLADHIADPVNNN 254
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 35.0 bits (79), Expect = 0.051 Identities = 14/20 (70%), Positives = 15/20 (75%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL DPV NN Sbjct: 237 TGKGPLENLFDHLDDPVANN 256
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 35.0 bits (79), Expect = 0.051 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP QNL DH++DPV NN Sbjct: 234 TGKGPIQNLYDHVADPVANN 253
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 35.0 bits (79), Expect = 0.051 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPV NN Sbjct: 235 TGKGPIENLYDHLADPVANN 254
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 35.0 bits (79), Expect = 0.051 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPV NN Sbjct: 119 TGKGPIENLYDHLADPVANN 138
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 34.7 bits (78), Expect = 0.067 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NLLDHL +PV NN Sbjct: 234 TGKGPLENLLDHLDNPVANN 253
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 34.3 bits (77), Expect = 0.087 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPV NN Sbjct: 234 TGKGPIENLFDHVADPVANN 253
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 34.3 bits (77), Expect = 0.087 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPV NN Sbjct: 233 TGKGPIENLADHIADPVANN 252
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 34.3 bits (77), Expect = 0.087 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DPV NN Sbjct: 237 TGKGPLENLNDHLADPVANN 256
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 34.3 bits (77), Expect = 0.087 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPV NN Sbjct: 232 TGKGPIENLFDHVADPVANN 251
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 34.3 bits (77), Expect = 0.087 Identities = 14/20 (70%), Positives = 15/20 (75%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP QNL DHL+DP NN Sbjct: 225 TGKGPIQNLADHLADPGTNN 244
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPV NN Sbjct: 206 TGKGPIENLSDHIADPVANN 225
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPV NN Sbjct: 234 TGKGPIENLYDHVADPVANN 253
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DH++DPV NN Sbjct: 234 TGKGPIENLSDHINDPVANN 253
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 33.1 bits (74), Expect = 0.19 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDP-VNNNILTSLKF 167 TG GP QNL DHL+DP VN ++ KF Sbjct: 222 TGKGPVQNLTDHLADPTVNKAFASATKF 249
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 32.7 bits (73), Expect = 0.25 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL+DP NN Sbjct: 234 TGKGPIENLSDHLADPAVNN 253
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 32.3 bits (72), Expect = 0.33 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNN 188 TG GP +NL DHL++P NN Sbjct: 243 TGKGPIENLTDHLANPAENN 262
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 32.0 bits (71), Expect = 0.43 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -3 Query: 250 FTGVGPFQNLLDHLSDPVNNNI 185 + G GP +NL HL+DP +NNI Sbjct: 213 YLGTGPLENLATHLADPWHNNI 234
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 31.2 bits (69), Expect = 0.74 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDP-VNNNILTSLKF 167 TG GP QNL DHL++P VNN + KF Sbjct: 222 TGKGPVQNLDDHLANPTVNNAFAFATKF 249
>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 127 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNNILTSL 173 TG GP +N L HL DP +N LT+L Sbjct: 91 TGEGPVENWLYHLQDPSAHNGLTAL 115
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 Query: 250 FTGVGPFQNLLDHLSDPVNNNILTS 176 +TG GP NL HL+DP + I + Sbjct: 242 YTGTGPIDNLFAHLADPGHATIFAA 266
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 Query: 250 FTGVGPFQNLLDHLSDPVNNNILTS 176 +TG GP NL HL+DP + I + Sbjct: 242 YTGTGPIDNLFAHLADPGHATIFAA 266
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNNIL 182 TG GP N HLSDP++ I+ Sbjct: 263 TGKGPLNNWATHLSDPLHTTII 284
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 247 TGVGPFQNLLDHLSDPVNNNIL 182 TG GP N HLSDP++ I+ Sbjct: 260 TGKGPLNNWATHLSDPLHTTII 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,403,290 Number of Sequences: 219361 Number of extensions: 493780 Number of successful extensions: 1266 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 1260 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1266 length of database: 80,573,946 effective HSP length: 59 effective length of database: 67,631,647 effective search space used: 1623159528 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
