>YO125_YEAST (Q12383) Uncharacterized protein YOL125W|
          Length = 476

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
 Frame = -2

Query: 635 LRGLALATCCHHLCQWKHYANKSFLSGLG----------IAEEEFHAMTWFSSWAVDGDH 486
           L+ + +A CC H+C +  Y N+S+++ L             E  F  +T   SW   G  
Sbjct: 339 LKAICIAMCCRHVCDYGDYVNRSYVTSLVEKYRAHGSILTYETFFRVLTKLCSWGTCG-- 396

Query: 485 SSQDSLEAEDLSSEGRETEKPDPEIIGVERIIRSIPGV--------ERSALGFMCKDIID 330
                              KP   I  +  ++ S  G         ER  +G M + +ID
Sbjct: 397 ------------------RKPGTAITDIVNVVESFEGAEPYTITIKERENIGLMARRVID 438

Query: 329 TGRLLWLKSK--GLDADLVRYVPSDISPEN 246
            GRL+++K K    +A+L+RYV SD+S EN
Sbjct: 439 EGRLVYVKEKFTEFNAELIRYVESDVSLEN 468

>YOD3_CAEEL (P34595) Hypothetical protein ZC262.3 in chromosome III|
          Length = 773

 Score = 32.7 bits (73), Expect = 0.96
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -3

Query: 253 QRTICSSPSVGLDLYKKKCSPILGCSIFISTRRNMAQF 140
           QR   SSPS  LDL  +KC  +LGC     + RN+  F
Sbjct: 21  QRNRSSSPSGFLDLQLEKCPQVLGCRCVRDSTRNIQCF 58

>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1018

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 593 QWKHYANKSFLSGLGIAEEEFHAMTWFSSWAVDGDHSSQDSLEAEDLSSEGRETEKPDPE 414
           +W+    K+ +  +G  ++E   M     W+++ D   QD       ++E  E+E+ + E
Sbjct: 137 KWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEEQDK------AAEAEESERMEEE 190

Query: 413 IIGVE 399
            +G E
Sbjct: 191 EVGEE 195

>FLO9_YEAST (P39712) Flocculation protein FLO9 precursor|
          Length = 1322

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 28/106 (26%), Positives = 49/106 (46%)
 Frame = +1

Query: 262  SDGTYLTRSASRPLDLSHSSLPVSMISLHMNPRALLSTPGILRIILSTPIISGSGFSVSL 441
            S+GT +  S+     +S S     +IS  +    + S+P I    +S+P+IS +  S S+
Sbjct: 887  SNGTSVISSSV----ISSSDTSSLVISSSVTSSLVTSSPVISSSFISSPVISSTTTSASI 942

Query: 442  PSEDKSSASKESWELWSPSTAQLLNHVMAWNSSSAIPSPERKDLFA 579
             SE   S+   +    S S+        + +SSS+I S   K  ++
Sbjct: 943  LSESSKSSVIPTSSSTSGSSESETGSASSASSSSSISSESPKSTYS 988

>HERC2_MOUSE (Q4U2R1) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4836

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
 Frame = +1

Query: 358  RALLSTPGILRIILSTPIISGSGFSVSLPSEDKSSASKESWELWSPSTAQ----LLNHVM 525
            RALLS    LR ILS P + G+G   +L ++D ++AS +  ++ SP   Q    LL  ++
Sbjct: 2331 RALLSHQDKLRQILSQPAVQGTG---TLQTDDGAAASPDLGDM-SPEGPQPPMILLQQLL 2386

Query: 526  AWNSSSAIPSP 558
               SS+  PSP
Sbjct: 2387 ---SSATQPSP 2394

>MALQ_CHLPN (Q9Z8L2) 4-alpha-glucanotransferase (EC 2.4.1.25) (Amylomaltase)|
           (Disproportionating enzyme) (D-enzyme)
          Length = 526

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = -3

Query: 364 APSDSCAKISLTPGGCCGLSPRV*MQTL*DMFRQIFRQRTICSSPSVGLDLYKKKCSPIL 185
           +P +S + ++L P     LS    + T+ ++ +++     +CS+PSV     K+K    L
Sbjct: 76  SPYNSISSVALNPL-FLSLSSLPNIDTIPEVAKKLQDMHELCSTPSVSYTQVKEKKWAFL 134

Query: 184 GCSIFISTRRNMAQFCCKSFVSAN*DL--VTETSRFW 80
                    R   Q CCKS +  N +     E+ R+W
Sbjct: 135 ---------REYYQKCCKSSLEGNSNFSEFLESERYW 162

>SH23A_HUMAN (Q9BRG2) SH2 domain-containing protein 3A (Novel SH2-containing|
           protein 1)
          Length = 576

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
 Frame = +1

Query: 229 LAMSKWFSGEISDGTYLTRSASRPLDLSHSSLPVSMISLHMNPRALLSTPGILRIILSTP 408
           L   KW + + +D  ++ RS   P  +  S++P+S +    +   LL  P  L  +  + 
Sbjct: 139 LRARKWSNSQPADLAHMGRSREDPAGMEASTMPISALPRTSSDPVLLKAPAPLGTVADSL 198

Query: 409 IISGSGFSVSLPSEDKSSASKESWELWS--PSTAQLLNH---VMAWNSSSAIPSPE 561
             S        P++   + S E  +     P+  +L+     V   + S + P PE
Sbjct: 199 RASDGQLQAKAPTKPPRTPSFELPDASERPPTYCELVPRVPSVQGTSPSQSCPEPE 254

>PORIM_HUMAN (Q8N131) Porimin precursor (Transmembrane protein 123) (Pro-oncosis|
           receptor inducing membrane injury)
           (Keratinocytes-associated transmembrane protein 3)
           (KCT-3)
          Length = 208

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +1

Query: 262 SDGTYLTRSASRPLDLSHSSLPVSMISLHMNPRALLSTPGILRIILSTPIISGSGFSVSL 441
           SD +  T +  +P   S+++ P  M+S +M    L STP    +  +T  IS S  +V+ 
Sbjct: 79  SDSSNTTVTTMKPTAASNTTTP-GMVSTNMTSTTLKSTPKTTSVSQNTSQISTSTMTVTH 137

Query: 442 PSEDKSSAS 468
            S   S+AS
Sbjct: 138 NSSVTSAAS 146

>AGX1_YEAST (P43567) Alanine--glyoxylate aminotransferase 1 (EC 2.6.1.44)|
          Length = 385

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 220 DLHLAMSKWFSGEISDGTYLTRSASRPLDLSHSSLPVSMISLHMNPRALLSTPGIL 387
           DLH  MS WF   + +G  LT  +  P ++S   L    ++   +  A L + G++
Sbjct: 284 DLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVV 339

>GS17_XENLA (P07733) Gastrula-specific protein 17|
          Length = 147

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
 Frame = +1

Query: 331 SMISLHMNPRALLSTPGILRIILSTPIISGSGFSVSLPSEDKSSASKESWELWSPSTAQL 510
           S  S H +P+   STP  L    S   IS +    + P+       ++ W+ WSP   QL
Sbjct: 20  SPTSRHPSPKVWNSTPPSLERGPSERQISPTPDQYTNPNR-----RRQPWKDWSPGRWQL 74

Query: 511 L-NHVMAWNSSSAIP-----SPERKDLF 576
           L N   +W  S   P     +PE K  F
Sbjct: 75  LQNQRQSWGLSPTAPTRHKRTPEPKPFF 102

>DCC_MOUSE (P70211) Netrin receptor DCC precursor (Tumor suppressor protein|
           DCC)
          Length = 1447

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +2

Query: 461 QPPKSPGSCGHHPQPNC*TMSWHGTLPPQSLVQRGKI 571
           Q P  P S    PQ NC  MSW   L P ++V RG I
Sbjct: 724 QVPDQPSSLHVRPQTNCIIMSWTPPLNP-NIVVRGYI 759

>DCC_HUMAN (P43146) Netrin receptor DCC precursor (Tumor suppressor protein|
           DCC) (Colorectal cancer suppressor)
          Length = 1447

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +2

Query: 461 QPPKSPGSCGHHPQPNC*TMSWHGTLPPQSLVQRGKI 571
           Q P  P S    PQ NC  MSW   L P ++V RG I
Sbjct: 724 QVPDQPSSLHVRPQTNCIIMSWTPPLNP-NIVVRGYI 759


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,165,093
Number of Sequences: 219361
Number of extensions: 2296390
Number of successful extensions: 6276
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6267
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)