ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63n11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470169.1| Oryza sativa (japonica cultivar-group), mRNA 153 9e-34
2ref|XM_470313.1| Oryza sativa (japonica cultivar-group), mRNA 153 9e-34
3dbj|AK102870.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 9e-34
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 1e-17
5gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genom... 100 1e-17
6gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 100 1e-17
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
8ref|NM_153833.1| Homo sapiens H1 histone family, member O, oocyt... 42 2.2
9gb|AC126941.3| Mus musculus BAC clone RP23-133N24 from chromosom... 42 2.2
10gb|AC118470.2| Homo sapiens chromosome 1 clone RP11-634B7, compl... 42 2.2
11gb|AY158091.1| Homo sapiens oocyte-specific histone H1 mRNA, com... 42 2.2
12gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Canc... 42 2.2
13gb|AC130460.2| Homo sapiens chromosome 16 clone CTA-485G10, comp... 42 2.2
14gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, compl... 42 2.2
15gb|AC144543.4| Mus musculus BAC clone RP23-394E9 from 12, comple... 42 2.2
16emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chro... 42 2.2
17gb|BC063091.1| Mus musculus cDNA clone IMAGE:30145107, partial cds 40 8.9
18emb|CR942592.2| Xenopus tropicalis finished cDNA, clone TGas068i16 40 8.9
19gb|AC127273.3| Mus musculus BAC clone RP24-142K18 from chromosom... 40 8.9
20gb|AC104914.9| Mus musculus chromosome 9, clone RP23-108E20, com... 40 8.9
21ref|XM_766372.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 8.9
22gb|AC146480.2| Danio rerio clone CH211-40O9, complete sequence 40 8.9
23emb|AL512629.7| Human DNA sequence from clone RP11-564N10 on chr... 40 8.9
24emb|AL590362.12| Human DNA sequence from clone RP11-214G2 on chr... 40 8.9
25emb|AL359827.14| Human DNA sequence from clone RP11-781D6 on chr... 40 8.9
26emb|AL353633.13| Human DNA sequence from clone RP11-452B18 on ch... 40 8.9
27emb|X73573.1|MMHOXDMRA M.musculus Hoxd-3 mRNA, complete CDS 40 8.9
28gb|U03496.1|AH005407S1 Mus musculus homeobox containing protein ... 40 8.9
29dbj|AK138525.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 8.9
30dbj|AK133705.1| Mus musculus 6 days neonate head cDNA, RIKEN ful... 40 8.9
31ref|XM_678153.1| PREDICTED: Danio rerio similar to CG14127-PA (L... 40 8.9
32gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence 40 8.9
33ref|XM_687358.1| PREDICTED: Danio rerio similar to cadherin-rela... 40 8.9
34ref|XM_691548.1| PREDICTED: Danio rerio similar to CG14127-PA (L... 40 8.9
35dbj|AK087919.1| Mus musculus 2 days pregnant adult female ovary ... 40 8.9
36ref|NM_001008484.1| Danio rerio protocadherin 2 alpha b 3 (pcdh2... 40 8.9
37dbj|AK048729.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 8.9
38gb|AC148670.1| Macaca mulatta Major Histocompatibility Complex B... 40 8.9
39ref|NM_001008483.1| Danio rerio protocadherin 2 alpha b 5 (pcdh2... 40 8.9
40gb|AF315556.1|AF315556 Caenorhabditis remanei notch-like transme... 40 8.9
41ref|XM_213633.3| PREDICTED: Rattus norvegicus homeo box D3 (Hoxd... 40 8.9
42dbj|AB075933.1| Danio rerio mRNA for cadherin-related neuronal r... 40 8.9
43dbj|AB075932.1| Danio rerio mRNA for cadherin-related neuronal r... 40 8.9
44dbj|AB075931.1| Danio rerio mRNA for cadherin-related neuronal r... 40 8.9
45dbj|AB075928.1| Danio rerio CNR family (zCNRv1, zCNRv2, zCNRv3, ... 40 8.9
46emb|AL929558.13| Zebrafish DNA sequence from clone CH211-159N7, ... 40 8.9
47emb|AL928733.14| Mouse DNA sequence from clone RP23-190O13 on ch... 40 8.9
48gb|AC124762.4| Mus musculus BAC clone RP23-155A10 from 6, comple... 40 8.9
49gb|U56401.1|MMU56401 Mus musculus Hoxd3 gene, complete cds 40 8.9
50gb|U56400.1|MMU56400 Mus musculus Hoxd3 mRNA, complete cds 40 8.9
51ref|NM_010468.1| Mus musculus homeo box D3 (Hoxd3), mRNA 40 8.9
52gb|AC141637.3| Mus musculus BAC clone RP23-424D5 from 9, complet... 40 8.9
53emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chr... 40 8.9
54emb|AL671011.9| Mouse DNA sequence from clone RP23-95O23 on chro... 40 8.9
55emb|X73572.1|MMHOXDGNA M.musculus Hoxd-3 gene, complete CDS 40 8.9
56emb|AL611945.21| Mouse DNA sequence from clone RP23-48A7 on chro... 40 8.9 
>ref|XM_470169.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1570

 Score =  153 bits (77), Expect = 9e-34
 Identities = 157/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                        
Query: 450  agataagtcttcagcctccaaagag---tcctgggagctgtggtcaccatccacagccca 506
            |||| |||||||| |||| ||||||   ||| |||||||||| |||||||||||||||||
Sbjct: 1113 agatgagtcttcaacctctaaagaggaatccggggagctgtgatcaccatccacagccca 1054

                                                                        
Query: 507  actgctaaaccatgtcatggcatggaactcttcctccgcaatccctagtccagagaggaa 566
             ||||||||||| ||||||| |||||| |||||||| | ||||||||  || ||||||||
Sbjct: 1053 gctgctaaaccaagtcatggtatggaaatcttcctctgtaatccctaaccctgagaggaa 994

                                                                        
Query: 567  agatttatttgcataatgcttccattgacagagatggtggcagcaggttgctaaagcaag 626
             |  ||||||||||| || |||||||| || ||||||||||||||||| || ||||||||
Sbjct: 993  tgtcttatttgcatagtgattccattggcacagatggtggcagcaggtggccaaagcaag 934

               
Query: 627  gcc 629
            |||
Sbjct: 933  gcc 931
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>ref|XM_470313.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1242

 Score =  153 bits (77), Expect = 9e-34
 Identities = 157/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                        
Query: 450  agataagtcttcagcctccaaagag---tcctgggagctgtggtcaccatccacagccca 506
            |||| |||||||| |||| ||||||   ||| |||||||||| |||||||||||||||||
Sbjct: 1026 agatgagtcttcaacctctaaagaggaatccggggagctgtgatcaccatccacagccca 967

                                                                        
Query: 507  actgctaaaccatgtcatggcatggaactcttcctccgcaatccctagtccagagaggaa 566
             ||||||||||| ||||||| |||||| |||||||| | ||||||||  || ||||||||
Sbjct: 966  gctgctaaaccaagtcatggtatggaaatcttcctctgtaatccctaaccctgagaggaa 907

                                                                        
Query: 567  agatttatttgcataatgcttccattgacagagatggtggcagcaggttgctaaagcaag 626
             |  ||||||||||| || |||||||| || ||||||||||||||||| || ||||||||
Sbjct: 906  tgtcttatttgcatagtgattccattggcacagatggtggcagcaggtggccaaagcaag 847

               
Query: 627  gcc 629
            |||
Sbjct: 846  gcc 844
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>dbj|AK102870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P07, full
            insert sequence
          Length = 1450

 Score =  153 bits (77), Expect = 9e-34
 Identities = 157/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                        
Query: 450  agataagtcttcagcctccaaagag---tcctgggagctgtggtcaccatccacagccca 506
            |||| |||||||| |||| ||||||   ||| |||||||||| |||||||||||||||||
Sbjct: 1181 agatgagtcttcaacctctaaagaggaatccggggagctgtgatcaccatccacagccca 1122

                                                                        
Query: 507  actgctaaaccatgtcatggcatggaactcttcctccgcaatccctagtccagagaggaa 566
             ||||||||||| ||||||| |||||| |||||||| | ||||||||  || ||||||||
Sbjct: 1121 gctgctaaaccaagtcatggtatggaaatcttcctctgtaatccctaaccctgagaggaa 1062

                                                                        
Query: 567  agatttatttgcataatgcttccattgacagagatggtggcagcaggttgctaaagcaag 626
             |  ||||||||||| || |||||||| || ||||||||||||||||| || ||||||||
Sbjct: 1061 tgtcttatttgcatagtgattccattggcacagatggtggcagcaggtggccaaagcaag 1002

               
Query: 627  gcc 629
            |||
Sbjct: 1001 gcc 999
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 103/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                            
Query: 450      agataagtcttcagcctccaaagag---tcctgggagctgtggtcaccatccacagccca 506
                |||| |||||||| |||| ||||||   ||| |||||||||| |||||||||||||||||
Sbjct: 34703163 agatgagtcttcaacctctaaagaggaatccggggagctgtgatcaccatccacagccca 34703104

                                                                            
Query: 507      actgctaaaccatgtcatggcatggaactcttcctccgcaatccctagtccagagaggaa 566
                 ||||||||||| ||||||| |||||| |||||||| | ||||||||  || ||||||||
Sbjct: 34703103 gctgctaaaccaagtcatggtatggaaatcttcctctgtaatccctaaccctgagaggaa 34703044



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 569      atttatttgcataatgcttccattgacagagatggtggcagcaggttgctaaagcaaggc 628
                ||||| ||||||| || |||||||| || ||||||||||||||||| || ||||||||||
Sbjct: 34702865 atttacttgcatagtgattccattggcacagatggtggcagcaggtggccaaagcaaggc 34702806

                 
Query: 629      c 629
                |
Sbjct: 34702805 c 34702805
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>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
              sequence
          Length = 164352

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 103/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Plus

                                                                          
Query: 450    agataagtcttcagcctccaaagag---tcctgggagctgtggtcaccatccacagccca 506
              |||| |||||||| |||| ||||||   ||| |||||||||| |||||||||||||||||
Sbjct: 159487 agatgagtcttcaacctctaaagaggaatccggggagctgtgatcaccatccacagccca 159546

                                                                          
Query: 507    actgctaaaccatgtcatggcatggaactcttcctccgcaatccctagtccagagaggaa 566
               ||||||||||| ||||||| |||||| |||||||| | ||||||||  || ||||||||
Sbjct: 159547 gctgctaaaccaagtcatggtatggaaatcttcctctgtaatccctaaccctgagaggaa 159606



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 569    atttatttgcataatgcttccattgacagagatggtggcagcaggttgctaaagcaaggc 628
              ||||| ||||||| || |||||||| || ||||||||||||||||| || ||||||||||
Sbjct: 159785 atttacttgcatagtgattccattggcacagatggtggcagcaggtggccaaagcaaggc 159844

               
Query: 629    c 629
              |
Sbjct: 159845 c 159845
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
              sequence
          Length = 164236

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 103/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                          
Query: 450    agataagtcttcagcctccaaagag---tcctgggagctgtggtcaccatccacagccca 506
              |||| |||||||| |||| ||||||   ||| |||||||||| |||||||||||||||||
Sbjct: 160880 agatgagtcttcaacctctaaagaggaatccggggagctgtgatcaccatccacagccca 160821

                                                                          
Query: 507    actgctaaaccatgtcatggcatggaactcttcctccgcaatccctagtccagagaggaa 566
               ||||||||||| ||||||| |||||| |||||||| | ||||||||  || ||||||||
Sbjct: 160820 gctgctaaaccaagtcatggtatggaaatcttcctctgtaatccctaaccctgagaggaa 160761



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                          
Query: 569    atttatttgcataatgcttccattgacagagatggtggcagcaggttgctaaagcaaggc 628
              ||||| ||||||| || |||||||| || ||||||||||||||||| || ||||||||||
Sbjct: 160582 atttacttgcatagtgattccattggcacagatggtggcagcaggtggccaaagcaaggc 160523

               
Query: 629    c 629
              |
Sbjct: 160522 c 160522
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 103/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                            
Query: 450      agataagtcttcagcctccaaagag---tcctgggagctgtggtcaccatccacagccca 506
                |||| |||||||| |||| ||||||   ||| |||||||||| |||||||||||||||||
Sbjct: 34793235 agatgagtcttcaacctctaaagaggaatccggggagctgtgatcaccatccacagccca 34793176

                                                                            
Query: 507      actgctaaaccatgtcatggcatggaactcttcctccgcaatccctagtccagagaggaa 566
                 ||||||||||| ||||||| |||||| |||||||| | ||||||||  || ||||||||
Sbjct: 34793175 gctgctaaaccaagtcatggtatggaaatcttcctctgtaatccctaaccctgagaggaa 34793116



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 569      atttatttgcataatgcttccattgacagagatggtggcagcaggttgctaaagcaaggc 628
                ||||| ||||||| || |||||||| || ||||||||||||||||| || ||||||||||
Sbjct: 34792937 atttacttgcatagtgattccattggcacagatggtggcagcaggtggccaaagcaaggc 34792878

                 
Query: 629      c 629
                |
Sbjct: 34792877 c 34792877
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>ref|NM_153833.1| Homo sapiens H1 histone family, member O, oocyte-specific (H1FOO),
           mRNA
          Length = 1067

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 310 agccacagcagcctcccggtg 330
           |||||||||||||||||||||
Sbjct: 129 agccacagcagcctcccggtg 149
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>gb|AC126941.3| Mus musculus BAC clone RP23-133N24 from chromosome 7, complete sequence
          Length = 196621

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 557    cagagaggaaagatttatttg 577
              |||||||||||||||||||||
Sbjct: 124696 cagagaggaaagatttatttg 124716
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>gb|AC118470.2| Homo sapiens chromosome 1 clone RP11-634B7, complete sequence
          Length = 59105

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 573  atttgcataatgcttccattg 593
            |||||||||||||||||||||
Sbjct: 6246 atttgcataatgcttccattg 6226
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>gb|AY158091.1| Homo sapiens oocyte-specific histone H1 mRNA, complete cds
          Length = 1067

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 310 agccacagcagcctcccggtg 330
           |||||||||||||||||||||
Sbjct: 129 agccacagcagcctcccggtg 149
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>gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 310   agccacagcagcctcccggtg 330
             |||||||||||||||||||||
Sbjct: 19372 agccacagcagcctcccggtg 19352
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>gb|AC130460.2| Homo sapiens chromosome 16 clone CTA-485G10, complete sequence
          Length = 135347

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 458   cttcagcctccaaagagtcctggga 482
             |||||||||||||||||| ||||||
Sbjct: 28019 cttcagcctccaaagagtgctggga 27995
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>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence
          Length = 163855

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 458    cttcagcctccaaagagtcctggga 482
              |||||||||||||||||| ||||||
Sbjct: 158738 cttcagcctccaaagagtgctggga 158714
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>gb|AC144543.4| Mus musculus BAC clone RP23-394E9 from 12, complete sequence
          Length = 219234

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 556    ccagagaggaaagatttattt 576
              |||||||||||||||||||||
Sbjct: 138491 ccagagaggaaagatttattt 138471
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>emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chromosome 4, complete
              sequence
          Length = 252953

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 613    gttgctaaagcaaggcccctg 633
              |||||||||||||||||||||
Sbjct: 121327 gttgctaaagcaaggcccctg 121307
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>gb|BC063091.1| Mus musculus cDNA clone IMAGE:30145107, partial cds
          Length = 3554

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 462  agcctccaaagagtcctggg 481
            ||||||||||||||||||||
Sbjct: 1480 agcctccaaagagtcctggg 1461
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>emb|CR942592.2| Xenopus tropicalis finished cDNA, clone TGas068i16
          Length = 3624

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 619  aaagcaaggcccctgagatggtgc 642
            ||||||||||||||||||| ||||
Sbjct: 1210 aaagcaaggcccctgagattgtgc 1233
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>gb|AC127273.3| Mus musculus BAC clone RP24-142K18 from chromosome 6, complete sequence
          Length = 174882

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 557    cagagaggaaagatttattt 576
              ||||||||||||||||||||
Sbjct: 135204 cagagaggaaagatttattt 135185
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>gb|AC104914.9| Mus musculus chromosome 9, clone RP23-108E20, complete sequence
          Length = 260181

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 592  tgacagagatggtggcagca 611
            ||||||||||||||||||||
Sbjct: 1003 tgacagagatggtggcagca 1022
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>ref|XM_766372.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_190_76254_75043) partial mRNA
          Length = 1212

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 583 tgcttccattgacagagatg 602
           ||||||||||||||||||||
Sbjct: 458 tgcttccattgacagagatg 477
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>gb|AC146480.2| Danio rerio clone CH211-40O9, complete sequence
          Length = 166906

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 590    attgacagagatggtggcag 609
              ||||||||||||||||||||
Sbjct: 165026 attgacagagatggtggcag 165045
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>emb|AL512629.7| Human DNA sequence from clone RP11-564N10 on chromosome 13 Contains the
              5' end of the FGF14 gene for fibroblast growth factor 14, a
              lipoyltransferase (LOC51601) pseudogene and a CpG island,
              complete sequence
          Length = 188696

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    gacttaagccacagcagcct 323
              ||||||||||||||||||||
Sbjct: 145783 gacttaagccacagcagcct 145802
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>emb|AL590362.12| Human DNA sequence from clone RP11-214G2 on chromosome 9 Contains a CpG
              island, complete sequence
          Length = 154698

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 425    gcttctcagtttctctgcct 444
              ||||||||||||||||||||
Sbjct: 115554 gcttctcagtttctctgcct 115535
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>emb|AL359827.14| Human DNA sequence from clone RP11-781D6 on chromosome 6, complete
            sequence
          Length = 2640

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   aaaatcttgatgtctcagtg 101
            ||||||||||||||||||||
Sbjct: 1484 aaaatcttgatgtctcagtg 1465
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>emb|AL353633.13| Human DNA sequence from clone RP11-452B18 on chromosome 13 Contains a
              novel pseudogene and a novel gene, complete sequence
          Length = 166649

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aaatcttgatgtctcagtga 102
              ||||||||||||||||||||
Sbjct: 117683 aaatcttgatgtctcagtga 117702
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>emb|X73573.1|MMHOXDMRA M.musculus Hoxd-3 mRNA, complete CDS
          Length = 2031

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 462 agcctccaaagagtcctggg 481
           ||||||||||||||||||||
Sbjct: 166 agcctccaaagagtcctggg 147
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>gb|U03496.1|AH005407S1 Mus musculus homeobox containing protein (Hox) gene, exon 1
          Length = 2563

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 462  agcctccaaagagtcctggg 481
            ||||||||||||||||||||
Sbjct: 2058 agcctccaaagagtcctggg 2039
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>dbj|AK138525.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330050G02 product:homeo box D3,
           full insert sequence
          Length = 2903

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 462 agcctccaaagagtcctggg 481
           ||||||||||||||||||||
Sbjct: 503 agcctccaaagagtcctggg 484
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>dbj|AK133705.1| Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched
           library, clone:5430401I10 product:homeo box D3, full
           insert sequence
          Length = 2414

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 462 agcctccaaagagtcctggg 481
           ||||||||||||||||||||
Sbjct: 370 agcctccaaagagtcctggg 351
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>ref|XM_678153.1| PREDICTED: Danio rerio similar to CG14127-PA (LOC555601), mRNA
          Length = 1832

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 524  tggcatggaactcttcctcc 543
            ||||||||||||||||||||
Sbjct: 1526 tggcatggaactcttcctcc 1507
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>gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence
          Length = 214875

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 462    agcctccaaagagtcctggg 481
              ||||||||||||||||||||
Sbjct: 180977 agcctccaaagagtcctggg 180958
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>ref|XM_687358.1| PREDICTED: Danio rerio similar to cadherin-related neuronal receptor
            variable 3 (LOC573332), mRNA
          Length = 2388

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 590  attgacagagatggtggcag 609
            ||||||||||||||||||||
Sbjct: 1114 attgacagagatggtggcag 1133
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>ref|XM_691548.1| PREDICTED: Danio rerio similar to CG14127-PA (LOC568229), mRNA
          Length = 1832

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 524  tggcatggaactcttcctcc 543
            ||||||||||||||||||||
Sbjct: 1526 tggcatggaactcttcctcc 1507
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>dbj|AK087919.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330040K20
           product:unclassifiable, full insert sequence
          Length = 2095

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 557 cagagaggaaagatttattt 576
           ||||||||||||||||||||
Sbjct: 804 cagagaggaaagatttattt 785
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>ref|NM_001008484.1| Danio rerio protocadherin 2 alpha b 3 (pcdh2ab3), mRNA
          Length = 3366

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 590  attgacagagatggtggcag 609
            ||||||||||||||||||||
Sbjct: 1114 attgacagagatggtggcag 1133
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>dbj|AK048729.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230027A03
           product:unclassifiable, full insert sequence
          Length = 3099

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 562 aggaaagatttatttgcata 581
           ||||||||||||||||||||
Sbjct: 279 aggaaagatttatttgcata 260
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>gb|AC148670.1| Macaca mulatta Major Histocompatibility Complex BAC MMU063G23, complete
              sequence
          Length = 189655

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    gtcctgggagctgtggtcac 493
              ||||||||||||||||||||
Sbjct: 152663 gtcctgggagctgtggtcac 152682
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>ref|NM_001008483.1| Danio rerio protocadherin 2 alpha b 5 (pcdh2ab5), mRNA
          Length = 3372

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 590  attgacagagatggtggcag 609
            ||||||||||||||||||||
Sbjct: 1120 attgacagagatggtggcag 1139
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>gb|AF315556.1|AF315556 Caenorhabditis remanei notch-like transmembrane receptor (glp-1)
            gene, complete cds
          Length = 7413

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   tggcggtgtttttctcgtga 60
            ||||||||||||||||||||
Sbjct: 2881 tggcggtgtttttctcgtga 2862
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>ref|XM_213633.3| PREDICTED: Rattus norvegicus homeo box D3 (Hoxd3), mRNA
          Length = 2313

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 462 agcctccaaagagtcctggg 481
           ||||||||||||||||||||
Sbjct: 262 agcctccaaagagtcctggg 243
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>dbj|AB075933.1| Danio rerio mRNA for cadherin-related neuronal receptor variable 5,
            complete cds
          Length = 3372

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 590  attgacagagatggtggcag 609
            ||||||||||||||||||||
Sbjct: 1120 attgacagagatggtggcag 1139
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>dbj|AB075932.1| Danio rerio mRNA for cadherin-related neuronal receptor variable 4,
            complete cds
          Length = 3366

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 590  attgacagagatggtggcag 609
            ||||||||||||||||||||
Sbjct: 1114 attgacagagatggtggcag 1133
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>dbj|AB075931.1| Danio rerio mRNA for cadherin-related neuronal receptor variable 3,
            complete cds
          Length = 3366

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 590  attgacagagatggtggcag 609
            ||||||||||||||||||||
Sbjct: 1114 attgacagagatggtggcag 1133
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>dbj|AB075928.1| Danio rerio CNR family (zCNRv1, zCNRv2, zCNRv3, zCNRv4, zCNRv5, zCNRv6,
             zCNRv7, zCNRv8, zCNRv9, zCNRv10, zCNRv11,zCNRv12, zCNRc)
             genes, complete cds
          Length = 116542

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 590   attgacagagatggtggcag 609
             ||||||||||||||||||||
Sbjct: 24709 attgacagagatggtggcag 24728



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 590   attgacagagatggtggcag 609
             ||||||||||||||||||||
Sbjct: 20914 attgacagagatggtggcag 20933



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 590   attgacagagatggtggcag 609
             ||||||||||||||||||||
Sbjct: 17245 attgacagagatggtggcag 17264
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>emb|AL929558.13| Zebrafish DNA sequence from clone CH211-159N7, complete sequence
          Length = 170597

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 590    attgacagagatggtggcag 609
              ||||||||||||||||||||
Sbjct: 168415 attgacagagatggtggcag 168434



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 590    attgacagagatggtggcag 609
              ||||||||||||||||||||
Sbjct: 164613 attgacagagatggtggcag 164632
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>emb|AL928733.14| Mouse DNA sequence from clone RP23-190O13 on chromosome 2, complete
             sequence
          Length = 110511

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   agcctccaaagagtcctggg 481
             ||||||||||||||||||||
Sbjct: 11167 agcctccaaagagtcctggg 11148
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>gb|AC124762.4| Mus musculus BAC clone RP23-155A10 from 6, complete sequence
          Length = 199207

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 557    cagagaggaaagatttattt 576
              ||||||||||||||||||||
Sbjct: 169608 cagagaggaaagatttattt 169627
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>gb|U56401.1|MMU56401 Mus musculus Hoxd3 gene, complete cds
          Length = 6158

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 462 agcctccaaagagtcctggg 481
           ||||||||||||||||||||
Sbjct: 335 agcctccaaagagtcctggg 316
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>gb|U56400.1|MMU56400 Mus musculus Hoxd3 mRNA, complete cds
          Length = 1913

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 462 agcctccaaagagtcctggg 481
           ||||||||||||||||||||
Sbjct: 178 agcctccaaagagtcctggg 159
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>ref|NM_010468.1| Mus musculus homeo box D3 (Hoxd3), mRNA
          Length = 1913

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 462 agcctccaaagagtcctggg 481
           ||||||||||||||||||||
Sbjct: 178 agcctccaaagagtcctggg 159
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>gb|AC141637.3| Mus musculus BAC clone RP23-424D5 from 9, complete sequence
          Length = 183859

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 592    tgacagagatggtggcagca 611
              ||||||||||||||||||||
Sbjct: 127664 tgacagagatggtggcagca 127683
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>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete
              sequence
          Length = 225684

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 562    aggaaagatttatttgcata 581
              ||||||||||||||||||||
Sbjct: 126939 aggaaagatttatttgcata 126958
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>emb|AL671011.9| Mouse DNA sequence from clone RP23-95O23 on chromosome 4, complete
              sequence
          Length = 226950

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 580    taatgcttccattgacagagatgg 603
              ||||||||||| ||||||||||||
Sbjct: 123840 taatgcttccagtgacagagatgg 123817
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>emb|X73572.1|MMHOXDGNA M.musculus Hoxd-3 gene, complete CDS
          Length = 3896

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 462 agcctccaaagagtcctggg 481
           ||||||||||||||||||||
Sbjct: 264 agcctccaaagagtcctggg 245
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>emb|AL611945.21| Mouse DNA sequence from clone RP23-48A7 on chromosome 4, complete
              sequence
          Length = 163383

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 558    agagaggaaagatttatttg 577
              ||||||||||||||||||||
Sbjct: 143670 agagaggaaagatttatttg 143651


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,674,336
Number of Sequences: 3902068
Number of extensions: 5674336
Number of successful extensions: 110391
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110246
Number of HSP's gapped (non-prelim): 145
length of query: 651
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 628
effective length of database: 17,143,297,704
effective search space: 10765990958112
effective search space used: 10765990958112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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