ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63n10 |
|---|---|
| Clone Library Name | barley_pub |
>MAGA5_HUMAN (P43359) Melanoma-associated antigen 5 (MAGE-5 antigen)| Length = 124 Score = 33.5 bits (75), Expect = 0.48 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%) Frame = +3 Query: 102 SIKETSAPCKETRFLPTLEEALGPAAAKRLT---QKPVIHTSTTVPNTTIFLDYVPSVSD 272 S+++ S CK L T EEALG + T Q+ V +S VP T L VP+ Sbjct: 2 SLEQKSQHCKPEEGLDTQEEALGLVGVQAATTEEQEAVSSSSPLVPGT---LGEVPAAGS 58 Query: 273 PG---*REGASLLHVGVEVRVSRNHTSTAETQ 359 PG +GAS + ++ + R + Q Sbjct: 59 PGPLKSPQGASAIPTAIDFTLWRQSIKGSSNQ 90
>PLXB2_HUMAN (O15031) Plexin-B2 precursor (MM1)| Length = 1838 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/75 (26%), Positives = 29/75 (38%) Frame = +3 Query: 30 GXXAGQVATRKKYTYMHLSLRVSPSIKETSAPCKETRFLPTLEEALGPAAAKRLTQKPVI 209 G AG T++ + + PCK T+F L+ GP A + V Sbjct: 905 GPQAGGTTLTIHGTHLDTGSQEDVRVTLNGVPCKVTKFGAQLQCVTGPQATRGQMLLEVS 964 Query: 210 HTSTTVPNTTIFLDY 254 + + VPN IF Y Sbjct: 965 YGGSPVPNPGIFFTY 979
>ADEC1_HUMAN (O15204) ADAM DEC1 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain-like protein decysin 1) (ADAM-like protein decysin 1) Length = 470 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/50 (36%), Positives = 22/50 (44%) Frame = +2 Query: 59 KKIHIYASFTQGLSFNKRNIGSMQRNEVPTNPRRSLGPSSSEKINPKTSN 208 KKIH +A G+SFN R +G N + PSS I K N Sbjct: 300 KKIHDHAQLLSGISFNNRRVGLAASNSL-------CSPSSVAVIEAKKKN 342
>CLCKB_RAT (P51802) Chloride channel protein ClC-Kb (Chloride channel Kb)| (ClC-K2) Length = 687 Score = 30.8 bits (68), Expect = 3.1 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Frame = -3 Query: 337 WLRLTRTSTPTCKRLAPSRYPGSLTLGT*SRKMVVFGTVVLVCITGFWVNLFAAAGPKAS 158 W +T+ S+P + P +L L +M VFGT+V + FW+ + A P + Sbjct: 367 WALMTKNSSPPW---SAEPDPQNLWLEWCHPQMTVFGTLVFFLVMKFWMLILATTIPIPA 423 Query: 157 SRVGRNL-VSLHGADVSFIEGETLS 86 G L + ++GA + + GE LS Sbjct: 424 ---GYFLPIFVYGAAIGRLFGEVLS 445
>GATA4_CHICK (P43691) Transcription factor GATA-4 (GATA-binding factor 4)| (Fragment) Length = 380 Score = 30.8 bits (68), Expect = 3.1 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +2 Query: 89 QGLSFNKRNIGSMQRNEVPTNPRRSLGPSSSEKINPKTSNTHEYNSA 229 +G+ KR ++ + + P GPSSSE + P TS+T +SA Sbjct: 253 EGIQTRKRKPKNLNKTKTPA------GPSSSESLTPTTSSTSSSSSA 293
>SYH_METCA (Q603B8) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 422 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = -3 Query: 229 GTVVLVCITGFWVNLFAAAGPKASSRVGRNLVSLHGADVSFIEGETLSERCIYVYFFLVA 50 GT VC G + L A G + SS +G +L + + GET +E ++YF V Sbjct: 277 GTQGTVCAGGRYDGLVAQLGGRDSSAIG---FALGMERLIELTGETFAENAPHIYFITVG 333 Query: 49 T 47 T Sbjct: 334 T 334
>CLCKB_MOUSE (Q9WUB6) Chloride channel protein ClC-Kb (Chloride channel Kb)| (ClC-K2) Length = 687 Score = 30.0 bits (66), Expect = 5.3 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = -3 Query: 337 WLRLTRTSTPTCKRLAPSRYPGSLTLGT*SRKMVVFGTVVLVCITGFWVNLFAAAGPKAS 158 W +T+ S+P A P L L ++ VFGT+V + FW+ + A P + Sbjct: 367 WALMTKNSSPPW---AAEPDPQKLWLEWCHPQLTVFGTLVFFLVMKFWMLILATTIPIPA 423 Query: 157 SRVGRNL-VSLHGADVSFIEGETLS 86 G L + ++GA + + GE LS Sbjct: 424 ---GYFLPIFVYGAVIGRLFGEVLS 445
>RK4_GRATL (Q6B8V4) Chloroplast 50S ribosomal protein L4| Length = 217 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +1 Query: 22 KRSDXXQVKLRQEKNTHICIFHSGSLLQ*KKHR---LHAKKRGSYQ-P*KKPWAQQ 177 K S+ VKL ++ N I I H + Q HR H + RG +KPW Q+ Sbjct: 20 KESEEIVVKLSKQSNKKIYILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQK 75
>NUHM_NEUCR (P40915) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 263 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = +2 Query: 398 RYKKIGILPRRFVDRHFTVQHDCVTINYMGFITRIDPRAP*ESVDVSKYLTLYGSTTAGP 577 +YKK ++P + + QH +I+ M + R+ P +V+ + T+Y T G Sbjct: 81 QYKKAAVMPLLDLGQR---QHGFCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVGK 137 Query: 578 F 580 F Sbjct: 138 F 138
>K0133_HUMAN (Q14146) Protein KIAA0133| Length = 1524 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = -3 Query: 208 ITGFWVNLFAAAGPKA---SSRVGRNLVSLHGADVSF-IEGETL 89 + G W N FA AGP+ + +NL+SL +D +EGE L Sbjct: 848 VVGHWENRFAKAGPEGIEPRGEIAQNLLSLVKSDFPIQLEGEQL 891
>CTTB2_MICMU (Q2QL82) Cortactin-binding protein 2 (CortBP2)| Length = 1647 Score = 29.3 bits (64), Expect = 9.0 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Frame = +3 Query: 99 PSIKETSAPCK-ETRFLPTLEEALGPAAAKRLTQKPVIHTSTTVPNTTIFLDYVPSVSDP 275 PSI T AP L T + PA L Q +S +P TT F + VS Sbjct: 601 PSIDLTVAPAGCAVSALATSQVGAWPAETPGLNQPACSDSSLVIPTTTAFRSSINPVSAS 660 Query: 276 G*REGAS 296 R GAS Sbjct: 661 SCRPGAS 667
>OSH3_YEAST (P38713) Oxysterol-binding protein homolog 3| Length = 996 Score = 29.3 bits (64), Expect = 9.0 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%) Frame = +3 Query: 153 LEEALGPAAAKRLTQKPVIHTSTT--VPNTTIFLDYVPSVSDPG*REGASLLHVGVEVRV 326 L++++ K+L H S P+T LDY SLLH G + Sbjct: 31 LKKSIEVGIYKKLKSSVDDHASAVHIAPDTKTLLDYTTK----------SLLHKGSSSNI 80 Query: 327 SRNHTSTAETQHTVVRFLRLPKTLDTKRSEFSHAGLS-TGISQFS 458 +H +++ H+ D KR E S++ LS +GI Q S Sbjct: 81 EEHHRRSSQHSHS------SSNGSDNKRKERSYSSLSISGIQQQS 119
>CD2L6_HUMAN (Q9BWU1) Cell division cycle 2-like protein kinase 6 (EC 2.7.11.22)| (CDC2-related protein kinase 6) (Death-preventing kinase) (Cyclin-dependent kinase 11) Length = 502 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/45 (26%), Positives = 26/45 (57%) Frame = +2 Query: 134 NEVPTNPRRSLGPSSSEKINPKTSNTHEYNSAKHHHFSGLRAKCQ 268 N+VP N + LGPS + P + ++++S++ ++ S ++ Q Sbjct: 432 NQVPPNKKPRLGPSGANSGGPVMPSDYQHSSSRLNYQSSVQGSSQ 476
>VL1_HPV22 (P50788) Major capsid protein L1| Length = 510 Score = 29.3 bits (64), Expect = 9.0 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 10/70 (14%) Frame = -3 Query: 568 CRRTIEGEVLTHIDALSRCPGI----------NPGNKTHIVYRYAIMLNCEMPVDKPAWE 419 CR +E EVLT I+A++ GI P N H YRY + P P + Sbjct: 385 CRIPLEAEVLTQINAMNH--GILENWQLGFVPTPDNSVHDTYRYLQSKATKCPDAVPDTQ 442 Query: 418 NSDLFVSKVF 389 D F F Sbjct: 443 KEDPFGQYTF 452
>CTTB2_HUMAN (Q8WZ74) Cortactin-binding protein 2 (CortBP2)| Length = 1663 Score = 29.3 bits (64), Expect = 9.0 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Frame = +3 Query: 99 PSIKETSAPCK-ETRFLPTLEEALGPAAAKRLTQKPVIHTSTTVPNTTIFLDYVPSVSDP 275 PSI T AP L T + PAA L Q +S +P T F + VS Sbjct: 615 PSIDLTVAPAGCAVSALATSQVGAWPAATPGLNQPACSDSSLVIPTTIAFCSSINPVSAS 674 Query: 276 G*REGAS 296 R GAS Sbjct: 675 SCRPGAS 681
>CTTB2_CALMO (Q2QLB3) Cortactin-binding protein 2 (CortBP2)| Length = 1663 Score = 29.3 bits (64), Expect = 9.0 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Frame = +3 Query: 99 PSIKETSAPCK-ETRFLPTLEEALGPAAAKRLTQKPVIHTSTTVPNTTIFLDYVPSVSDP 275 PSI T AP L T + PAA L Q +S +P T F + VS Sbjct: 615 PSIDLTVAPAGCAVSALATSQVGAWPAATPGLNQPACSDSSLVIPTTIAFCSSINPVSAS 674 Query: 276 G*REGAS 296 R GAS Sbjct: 675 SCRPGAS 681 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,800,793 Number of Sequences: 219361 Number of extensions: 1888826 Number of successful extensions: 4492 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4335 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4482 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
