ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63n09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 759 0.0
2gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 618 e-174
3gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 618 e-174
4gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 450 e-123
5gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 418 e-114
6gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 408 e-111
7emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 355 7e-95
8gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 224 2e-55
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 1e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 5e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 5e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 5e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 2e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 2e-18
24gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 94 4e-16
25gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 92 2e-15
26gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 88 3e-14
27gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 88 3e-14
28gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 88 3e-14
29gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 88 3e-14
30emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase 80 7e-12
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
32dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
33gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA... 78 3e-11
34gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c... 70 6e-09
35gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 2e-08
36gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 2e-08
37emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car... 48 0.023
38gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 44 0.36
39gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.36
40gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.4
41gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.4
42dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
43gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.4
44emb|Y10657.1|CLRCAGENE C.littorale rca gene 42 1.4
45gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
46emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.4
47emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 42 1.4
48gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.4
49gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 5.6
50gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 5.6
51gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 5.6
52gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre... 40 5.6
53gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 5.6
54ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001... 40 5.6
55gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 5.6
56gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 5.6
57gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 5.6
58gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 5.6
59gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2... 40 5.6
60gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co... 40 5.6
61ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 5.6
62gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.6
63gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 5.6
64gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 5.6
65gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 5.6
66gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 5.6
67emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 5.6
68gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com... 40 5.6
69ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 5.6
70ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 5.6
71gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 5.6
72emb|AL824716.8| Mouse DNA sequence from clone RP23-277F20 on chr... 40 5.6
73gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 5.6 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  759 bits (383), Expect = 0.0
 Identities = 418/423 (98%), Gaps = 5/423 (1%)
 Strand = Plus / Minus

                                                                        
Query: 4    tatttagagatatattaacaaaa-atgcccagcaatcgcttggatgcgatgcggacttag 62
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625

                                                                        
Query: 63   -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 121
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1565

                                                                        
Query: 122  t-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 180
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 ttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1505

                                                                        
Query: 181  ca-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 239
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 catcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 1445

                                                                        
Query: 240  gtgt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 298
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 gtgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 1385

                                                                        
Query: 299  catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 1325

                                                                        
Query: 359  cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 1265

               
Query: 419  gct 421
            |||
Sbjct: 1264 gct 1262
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  618 bits (312), Expect = e-174
 Identities = 393/416 (94%), Gaps = 8/416 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  atatattaacaaaa-atgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 65
           |||||||||||||| |||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 66  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 125
           | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628

                                                                       
Query: 126 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 185
           | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568

                                                                       
Query: 186 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 245
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508

                                                                       
Query: 246 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 305
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 448

                                                                       
Query: 306 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 388

                                                                   
Query: 366 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgct 421
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 387 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgct 332
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  618 bits (312), Expect = e-174
 Identities = 393/416 (94%), Gaps = 8/416 (1%)
 Strand = Plus / Minus

                                                                        
Query: 13   atatattaacaaaa-atgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 65
            |||||||||||||| |||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 66   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 125
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 126  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 185
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 186  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 245
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 246  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 305
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                        
Query: 306  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238

                                                                    
Query: 366  ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgct 421
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgct 1182
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  450 bits (227), Expect = e-123
 Identities = 361/402 (89%), Gaps = 9/402 (2%)
 Strand = Plus / Minus

                                                                        
Query: 27   atgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga- 79
            |||||||||| ||||||| |||||||||||  ||||||||      || |||||||||| 
Sbjct: 1592 atgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcagaa 1533

                                                                        
Query: 80   tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgtt 139
            || | |||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 1532 taattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggtt 1473

                                                                        
Query: 140  gggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgc 199
            |||||| ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| 
Sbjct: 1472 gggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgt 1413

                                                                        
Query: 200  tgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttct 259
            ||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | ||||
Sbjct: 1412 tgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttct 1355

                                                                        
Query: 260  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 319
            ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 1354 aaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggc 1295

                                                                        
Query: 320  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 379
            ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1294 tcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgt 1235

                                                      
Query: 380  gcccgtactctagcagcttctcgactgtcatctttggctgct 421
            | |||||||| |||| |||||| || |||||||| |||||||
Sbjct: 1234 ggccgtactccagcaacttctccaccgtcatcttgggctgct 1193
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  418 bits (211), Expect = e-114
 Identities = 211/211 (100%)
 Strand = Plus / Minus

                                                                        
Query: 211  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 271  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 331  tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176

                                           
Query: 391  agcagcttctcgactgtcatctttggctgct 421
            |||||||||||||||||||||||||||||||
Sbjct: 7175 agcagcttctcgactgtcatctttggctgct 7145



 Score =  412 bits (208), Expect = e-112
 Identities = 215/216 (99%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atatatttagagatatattaacaaaa-atgcccagcaatcgcttggatgcgatgcggact 59
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7738 atatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggact 7679

                                                                        
Query: 60   taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7678 taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 7619

                                                                        
Query: 120  cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7618 cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 7559

                                                
Query: 180  gcacgggcaaagtaccttgctgtgctcctttacctc 215
            ||||||||||||||||||||||||||||||||||||
Sbjct: 7558 gcacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                        
Query: 337  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 396
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                   
Query: 397  ttctcgactgtcatctttggctg 419
            ||||| |  |||||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctg 3879
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  408 bits (206), Expect = e-111
 Identities = 213/214 (99%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atatatttagagatatattaacaaaa-atgcccagcaatcgcttggatgcgatgcggact 59
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1378 atatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggact 1319

                                                                        
Query: 60   taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 1259

                                                                        
Query: 120  cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 1199

                                              
Query: 180  gcacgggcaaagtaccttgctgtgctcctttacc 213
            ||||||||||||||||||||||||||||||||||
Sbjct: 1198 gcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  319 bits (161), Expect = 4e-84
 Identities = 161/161 (100%)
 Strand = Plus / Minus

                                                                        
Query: 261  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 321  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048

                                                     
Query: 381  cccgtactctagcagcttctcgactgtcatctttggctgct 421
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgct 1007
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  355 bits (179), Expect = 7e-95
 Identities = 182/183 (99%)
 Strand = Plus / Minus

                                                                       
Query: 239 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 298
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 299 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                                                                       
Query: 359 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129

              
Query: 419 gct 421
           |||
Sbjct: 128 gct 126
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  224 bits (113), Expect = 2e-55
 Identities = 149/161 (92%)
 Strand = Plus / Minus

                                                                        
Query: 261  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 320
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 321  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 380
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244

                                                     
Query: 381  cccgtactctagcagcttctcgactgtcatctttggctgct 421
             |||||||| |||| |||||| || |||||||| |||||||
Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgct 1203



 Score =  176 bits (89), Expect = 4e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 85   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 144
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 145  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 204
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 205  tcctttacc 213
            |||||||||
Sbjct: 1369 tcctttacc 1361
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 154  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 210
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 211  acctcctcct 220
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 260  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 319
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 320  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 379
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191

                                                      
Query: 380  gcccgtactctagcagcttctcgactgtcatctttggctgct 421
              |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1149
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 154  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 210
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 211  acctcctcct 220
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 260  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 319
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 320  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 379
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229

                                                      
Query: 380  gcccgtactctagcagcttctcgactgtcatctttggctgct 421
              |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1187
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 154  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 210
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 211  acctcctcct 220
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 260  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 319
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 320  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 379
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228

                                                      
Query: 380  gcccgtactctagcagcttctcgactgtcatctttggctgct 421
              |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1186
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 154  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 210
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 211  acctcctcct 220
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 260  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 319
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 320  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 379
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012

                                                      
Query: 380  gcccgtactctagcagcttctcgactgtcatctttggctgct 421
              |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgct 970
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 154  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 210
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 211  acctcctcct 220
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 260  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 319
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 320  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 379
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233

                                                      
Query: 380  gcccgtactctagcagcttctcgactgtcatctttggctgct 421
              |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1191
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 94     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 154    ggcattttggtcggtgcaaccttccggcacgggca 188
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 136/165 (82%)
 Strand = Plus / Plus

                                                                          
Query: 257    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 316
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 317    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 376
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425

                                                           
Query: 377    tgtgcccgtactctagcagcttctcgactgtcatctttggctgct 421
              |||  |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgct 108470



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 112    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 171
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 172    accttccggcacggg 186
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 94    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 154   ggcattttggtcggtgcaaccttccggcacgggca 188
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 136/165 (82%)
 Strand = Plus / Plus

                                                                         
Query: 257   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 316
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 317   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 376
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302

                                                          
Query: 377   tgtgcccgtactctagcagcttctcgactgtcatctttggctgct 421
             |||  |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgct 30347



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 112   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 171
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 172   accttccggcacggg 186
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 154  ggcattttggtcggtgcaaccttccggcacgggca 188
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 260  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 319
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 320  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 379
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197

                                                      
Query: 380  gcccgtactctagcagcttctcgactgtcatctttggctgct 421
              |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgct 1155
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 154  ggcattttggtcggtgcaaccttccggcacgggca 188
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 131/160 (81%)
 Strand = Plus / Minus

                                                                        
Query: 262  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 321
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 322  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 381
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190

                                                    
Query: 382  ccgtactctagcagcttctcgactgtcatctttggctgct 421
            |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgct 1150
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 94       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 154      ggcattttggtcggtgcaaccttccggcacgggca 188
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 136/165 (82%)
 Strand = Plus / Plus

                                                                            
Query: 257      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 316
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 317      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 376
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564

                                                             
Query: 377      tgtgcccgtactctagcagcttctcgactgtcatctttggctgct 421
                |||  |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgct 28303609



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 112      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 171
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 172      accttccggcacggg 186
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 94       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 154      ggcattttggtcggtgcaaccttccggcacgggca 188
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 136/165 (82%)
 Strand = Plus / Plus

                                                                            
Query: 257      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 316
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 317      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 376
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013

                                                             
Query: 377      tgtgcccgtactctagcagcttctcgactgtcatctttggctgct 421
                |||  |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgct 28286058



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 112      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 171
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 172      accttccggcacggg 186
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 154  ggcattttggtcggtgcaaccttccggcacgggca 188
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 131/160 (81%)
 Strand = Plus / Minus

                                                                        
Query: 262  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 321
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 322  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 381
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225

                                                    
Query: 382  ccgtactctagcagcttctcgactgtcatctttggctgct 421
            |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgct 1185
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 100 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 159
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 160 ttggtcggtgcaaccttccggcacgggca 188
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 8e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 154  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 210
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 211  acctcctcct 220
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Minus

                                                                        
Query: 260  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 319
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 320  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 379
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240

                                                      
Query: 380  gcccgtactctagcagcttctcgactgtcatctttggctgct 421
              |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgct 1198
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 94  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 154 ggcattttggtcggtgcaaccttccggcacgggca 188
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 134/163 (82%)
 Strand = Plus / Minus

                                                                        
Query: 258  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 317
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 318  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 377
            ||||| |||  |||| || |||||||| | ||| || || ||||||||||| || |||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888

                                                       
Query: 378  gtgcccgtactctagcagcttctcgactgtcatctttggctgc 420
            ||  |||||||| |||||||| || |  |||||||| ||||||
Sbjct: 887  gttgccgtactccagcagcttgtccagggtcatcttgggctgc 845



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 104  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 163
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 164  tcggtgcaaccttc 177
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
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>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 319
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 320 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 379
           ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446

                                                     
Query: 380 gcccgtactctagcagcttctcgactgtcatctttggctgct 421
             |||||||| |  ||||| ||||  |||||||| |||||||
Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgct 404
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>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                       
Query: 266 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 325
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 326 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 385
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                               
Query: 386 actctagcagcttctcgactgtcatctttggctgct 421
           |||| |  ||||||||||  || ||||| |||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgct 764
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>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 266  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 325
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 326  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 385
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                
Query: 386  actctagcagcttctcgactgtcatctttggctgct 421
            |||| |  ||||||||||  || ||||| |||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgct 1159
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 265  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 324
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 325  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 384
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                
Query: 385  tactctagcagcttctcgactgtcatctttggctgc 420
            ||||| |||||||| || |  |||||||| ||||||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgc 1039



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 104  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 163
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 164  tcggtgcaaccttc 177
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
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>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 266  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 325
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 326  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 385
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                
Query: 386  actctagcagcttctcgactgtcatctttggctgct 421
            |||| |  ||||||||||  || ||||| |||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgct 1159
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>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 283 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 342
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 343 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 398
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 94      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 154     ggcattttggtcggtgcaaccttccggcacgggca 188
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 94    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 153
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 154   ggcattttggtcggtgcaaccttccggcacgggca 188
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
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>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                        
Query: 337  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 396
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                   
Query: 397  ttctcgactgtcatctttggctg 419
            ||||| |  |||||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctg 1310
to top
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 337  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 396
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                   
Query: 397  ttctcgactgtcatctttggctg 419
            |||||||  |||||||| |||||
Sbjct: 1182 ttctcgatggtcatcttgggctg 1160
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>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 104  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 163
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 164  tcggtgcaaccttc 177
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 104  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 163
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 164  tcggtgcaaccttc 177
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
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>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 102/128 (79%)
 Strand = Plus / Minus

                                                                        
Query: 294  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 353
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 354  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 413
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                    
Query: 414  tggctgct 421
             |||||||
Sbjct: 1243 cggctgct 1236
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>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 286  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 335
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
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>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 299   catcacccagagctgcctggct 320
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254
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>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     tatatttagagatatattaac 22
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
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>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     tatatttagagatatattaac 22
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 70      aaacatcagatattaaaagtg 90
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
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>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 221   atgcagcaagagatggtgggt 241
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
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>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 337  agctgcacacgcttgacattgtcctgctc 365
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 70      aaacatcagatattaaaagtg 90
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     aaacatcagatattaaaagtg 90
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     atatatttagagatatattaa 21
             |||||||||||||||||||||
Sbjct: 67943 atatatttagagatatattaa 67963
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>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 2    tatatttagagatatattaac 22
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   cctttacctcctcctatgca 225
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
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>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 299  catcacccagagctgcctggctca 322
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565
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>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  cctttacctcctcctatgca 225
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
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>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 295  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 354
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 355  ttgtcctgctcctggacgagcatg 378
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   cctttacctcctcctatgca 225
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
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>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 gtcagcaagctgcacacgct 349
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     tcagatattaaaagtggcat 94
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     tcagatattaaaagtggcat 94
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tcagatattaaaagtggcat 94
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 299  catcacccagagctgcctggctca 322
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
             sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     tatttagagatatattaacaaaaa 27
             ||||||||||| ||||||||||||
Sbjct: 36880 tatttagagatttattaacaaaaa 36857
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>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    ttgacattgtcctgctcctg 368
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419
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>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 299  catcacccagagctgcctggctca 322
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 103  ggtgtaaaggcagctgccgtcgtcgctc 130
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   cctttacctcctcctatgca 225
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
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>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 299  catcacccagagctgcctggctca 322
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659
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>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 299  catcacccagagctgcctggctca 322
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026
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>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 299  catcacccagagctgcctggctca 322
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tggcatgcttaaaaggtgta 108
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    ttgacattgtcctgctcctg 368
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979
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>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 299  catcacccagagctgcctggctca 322
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 195 cttgctgtgctcctttacctcctc 218
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   cctttacctcctcctatgca 225
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
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>emb|AL824716.8| Mouse DNA sequence from clone RP23-277F20 on chromosome 4, complete
             sequence
          Length = 185441

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    agatatattaacaaaaatgc 30
             ||||||||||||||||||||
Sbjct: 65486 agatatattaacaaaaatgc 65467
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     atcagatattaaaagtggcatgct 97
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,438,557
Number of Sequences: 3902068
Number of extensions: 3438557
Number of successful extensions: 69029
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 68746
Number of HSP's gapped (non-prelim): 232
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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