ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63n01 |
|---|---|
| Clone Library Name | barley_pub |
>RSSA_SOYBN (O22518) 40S ribosomal protein SA (p40)| Length = 310 Score = 69.3 bits (168), Expect = 8e-12 Identities = 39/73 (53%), Positives = 45/73 (61%), Gaps = 8/73 (10%) Frame = -1 Query: 588 GHKWDVMVDLFFYRDPEEAKEQEDEAAGAPEYTAITDY----XXXAGQWGG---DQWTAD 430 G KWDVMVDLFFYR+PEEAK+QE+E A A +Y AITD+ GQW G W+ Sbjct: 199 GLKWDVMVDLFFYREPEEAKQQEEEEAPAVDY-AITDFNAGAIAADGQWPGTIDQSWSDA 257 Query: 429 APAP-PPVTGGEW 394 P P P V G W Sbjct: 258 VPQPIPAVPGVNW 270
>RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin receptor| homolog) Length = 298 Score = 64.7 bits (156), Expect = 2e-10 Identities = 43/118 (36%), Positives = 47/118 (39%), Gaps = 4/118 (3%) Frame = -1 Query: 588 GHKWDVMVDLFFYRDPEEAK-EQEDEAAGAPEYTAITDYXXXAGQWGGDQWTADAPAPPP 412 G KWDVMVDLFFYR+PEE K E EDEA EY A+ G GGDQWT Sbjct: 196 GQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALP--APEYGMVGGDQWTT-----AQ 248 Query: 411 VTGGEWPMAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGWEAGVQPA---AQGWE 247 + WP GWEA P+ A GWE Sbjct: 249 IPDAAWP--------GEGQAPISAAPAAASWSDSAAAPADGGWEAAAPPSGAPAAGWE 298
>RSSA_CICAR (O65751) 40S ribosomal protein SA (p40)| Length = 300 Score = 62.4 bits (150), Expect = 9e-10 Identities = 38/77 (49%), Positives = 44/77 (57%), Gaps = 8/77 (10%) Frame = -1 Query: 588 GHKWDVMVDLFFYRDPEEAKEQEDEAAGAPEYTAITDYXXXA----GQWGG--DQ-WTAD 430 G KWDVMVDLFFYR+PEEAK+ E++ AP+Y AI D+ A GQW DQ W Sbjct: 195 GLKWDVMVDLFFYREPEEAKQPEEDEVAAPDY-AIADFNVSAIPSDGQWPAAIDQPWNDA 253 Query: 429 APAP-PPVTGGEWPMAE 382 P P P V W E Sbjct: 254 VPQPIPAVPAVNWAAPE 270
>RSSA_DAUCA (O80377) 40S ribosomal protein SA (p40)| Length = 297 Score = 61.2 bits (147), Expect = 2e-09 Identities = 35/80 (43%), Positives = 41/80 (51%), Gaps = 15/80 (18%) Frame = -1 Query: 588 GHKWDVMVDLFFYRDPEEAKEQEDE---------------AAGAPEYTAITDYXXXAGQW 454 GHKW+VMVDLFFYR+PEE K+QE+E GA ++ AI D QW Sbjct: 192 GHKWEVMVDLFFYREPEETKDQEEEDLPVGDYVADYAAAPIGGADQWNAIPD-----AQW 246 Query: 453 GGDQWTADAPAPPPVTGGEW 394 GGD PA V G W Sbjct: 247 GGD---VVQPANSAVPAGTW 263
>RSSAB_ARATH (Q8H173) 40S ribosomal protein SA-2 (p40 protein homolog)| Length = 280 Score = 57.4 bits (137), Expect = 3e-08 Identities = 43/113 (38%), Positives = 50/113 (44%), Gaps = 1/113 (0%) Frame = -1 Query: 582 KWDVMVDLFFYRDPEEAKEQEDEAAGAPEYTAITDYXXXAGQWGGDQWTADAPAPPPVTG 403 KWDVMVDLFFYR+PEEAK++ DE A DY G GGDQWT + +G Sbjct: 199 KWDVMVDLFFYREPEEAKQEGDEEAEVQ-----ADY----GMVGGDQWTTAQISDAAWSG 249 Query: 402 G-EWPMAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGWEAGVQPAAQGWE 247 E P++ A GWEA PAA GWE Sbjct: 250 EVEQPIS---------------------AAPAVGVTVAAGWEAASVPAA-GWE 280
>RSSA_BRANA (Q9ZSR8) 40S ribosomal protein SA (p40) (Laminin receptor-like| protein) Length = 292 Score = 55.1 bits (131), Expect = 1e-07 Identities = 40/116 (34%), Positives = 45/116 (38%), Gaps = 4/116 (3%) Frame = -1 Query: 582 KWDVMVDLFFYRDPEEAK-EQEDEAAGAPEY-TAITDYXXXAGQWGGDQWTADAPAPPPV 409 KWDVMVDLFFYR+PEE K E EDE A E+ +Y GGDQWT A + Sbjct: 195 KWDVMVDLFFYREPEETKPEDEDEVAPQAEFGLPAPEYG------GGDQWTTAA-----I 243 Query: 408 TGGEWPMAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGWEAGVQP--AAQGWE 247 WP GW+A V P A WE Sbjct: 244 PDAAWP-------GEAQAPISAAPAAGSWNDSAAPAAAEGGWDAAVPPTTAVTNWE 292
>RSSA_CHLVR (P38984) 40S ribosomal protein SA (p40) (33 kDa laminin-binding| protein) Length = 293 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Frame = -1 Query: 579 WDVMVDLFFYRDPEEAKEQEDEAAGA---------PEYTAITDYXXXAGQWGGDQWTADA 427 W+VM DLFFYRDPE+ +++E AA A P+++ D W GDQ Sbjct: 195 WNVMPDLFFYRDPEDIEKEEQAAAIASAKPDEPYQPDFSGNVDQSAAGADW-GDQ----- 248 Query: 426 PAPPPVTGGEW 394 P VTG +W Sbjct: 249 ---PVVTGADW 256
>RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) (37LRP) Length = 296 Score = 46.6 bits (109), Expect = 5e-05 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Frame = -1 Query: 585 HKWDVMVDLFFYRDPEEAKEQEDEAAGAPEYTAITDYXXXAGQWGGDQWTADAP---APP 415 H W+VM DL+FYRDPEE +++E AA A+T +WTA AP APP Sbjct: 193 HPWEVMPDLYFYRDPEEIEKEEQAAA----EKAVTKEEFQT------EWTAPAPEFTAPP 242 Query: 414 PVTGGEW 394 +W Sbjct: 243 QPEVADW 249
>RSSA_URECA (P38981) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding| protein) Length = 317 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 7/67 (10%) Frame = -1 Query: 579 WDVMVDLFFYRDPEEAKE--QEDEAAG----APEYTAITDYXXXAGQWGGDQWTADAP-A 421 W+VMVDLFFYRDPEEA++ Q ++AA AP+ D A W ++ P A Sbjct: 195 WEVMVDLFFYRDPEEAEKEAQAEQAAAEKDKAPKEEFTADQAFTAPGTEVSDWASEVPVA 254 Query: 420 PPPVTGG 400 P P+ G Sbjct: 255 PVPILAG 261
>RSSA_STRPU (P46771) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding| protein) (Fragment) Length = 264 Score = 46.2 bits (108), Expect = 7e-05 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 23/78 (29%) Frame = -1 Query: 579 WDVMVDLFFYRDPEEAKEQEDEAAGAPEYTAITDYXXXAGQWGGD--------------- 445 W++MVDL+F+RDPEEA+++E EA A QWG D Sbjct: 118 WEIMVDLYFFRDPEEAEKEEQEARDRAVAVKEEPAQPYAEQWGSDPVAVPAGGQPVGVPD 177 Query: 444 --QWTAD------APAPP 415 W AD APAPP Sbjct: 178 VTDWAADANKVAGAPAPP 195
>RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated protein 1)| Length = 290 Score = 45.4 bits (106), Expect = 1e-04 Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Frame = -1 Query: 579 WDVMVDLFFYRDPE---EAKEQEDEAAGAPE--YTAITDYXXXAGQWGGDQWTADAPAPP 415 WDVMVDL+FYRDPE E K +E++ G E AI G W APA Sbjct: 198 WDVMVDLYFYRDPEAEAEEKVEEEKLPGVEEEGVAAIESGFPATGDWEA------APAGF 251 Query: 414 PVTGGEW 394 P T GEW Sbjct: 252 PAT-GEW 257
>RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 43.1 bits (100), Expect = 6e-04 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 31/95 (32%) Frame = -1 Query: 585 HKWDVMVDLFFYRDPEEAKEQEDEA---------------AGAPEYTA----ITDYXXX- 466 H W+VM DL+FYRDPEE +++E A A APE+TA + D+ Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGV 251 Query: 465 -----------AGQWGGDQWTADAPAPPPVTGGEW 394 W T D A P EW Sbjct: 252 QVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEW 286
>RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 43.1 bits (100), Expect = 6e-04 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 31/95 (32%) Frame = -1 Query: 585 HKWDVMVDLFFYRDPEEAKEQEDEA---------------AGAPEYTA----ITDYXXX- 466 H W+VM DL+FYRDPEE +++E A A APE+TA + D+ Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGV 251 Query: 465 -----------AGQWGGDQWTADAPAPPPVTGGEW 394 W T D A P EW Sbjct: 252 QVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEW 286
>RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) (Colon carcinoma laminin-binding protein) (NEM/1CHD4) (Multidrug resistance-associated protein MGr1-Ag) Length = 294 Score = 43.1 bits (100), Expect = 6e-04 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 31/95 (32%) Frame = -1 Query: 585 HKWDVMVDLFFYRDPEEAKEQEDEA---------------AGAPEYTA----ITDYXXX- 466 H W+VM DL+FYRDPEE +++E A A APE+TA + D+ Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGV 251 Query: 465 -----------AGQWGGDQWTADAPAPPPVTGGEW 394 W T D A P EW Sbjct: 252 QVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEW 286
>RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 43.1 bits (100), Expect = 6e-04 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 31/95 (32%) Frame = -1 Query: 585 HKWDVMVDLFFYRDPEEAKEQEDEA---------------AGAPEYTA----ITDYXXX- 466 H W+VM DL+FYRDPEE +++E A A APE+TA + D+ Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGV 251 Query: 465 -----------AGQWGGDQWTADAPAPPPVTGGEW 394 W T D A P EW Sbjct: 252 QVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEW 286
>RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein)| Length = 294 Score = 43.1 bits (100), Expect = 6e-04 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 31/95 (32%) Frame = -1 Query: 585 HKWDVMVDLFFYRDPEEAKEQEDEA---------------AGAPEYTA----ITDYXXX- 466 H W+VM DL+FYRDPEE +++E A A APE+TA + D+ Sbjct: 192 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGV 251 Query: 465 -----------AGQWGGDQWTADAPAPPPVTGGEW 394 W T D A P EW Sbjct: 252 QVPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATEW 286
>RSSA_TRIGR (P38980) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding| protein) Length = 316 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/55 (38%), Positives = 32/55 (58%) Frame = -1 Query: 579 WDVMVDLFFYRDPEEAKEQEDEAAGAPEYTAITDYXXXAGQWGGDQWTADAPAPP 415 W++M DL+F+RDPEEA+++E EA TA+ + Q +QW+ PP Sbjct: 195 WEIMCDLYFFRDPEEAEKEEQEA--RDRATAVKE---EPAQPYAEQWSDPVAVPP 244
>RS0B_SCHPO (Q9P546) 40S ribosomal protein S0-B| Length = 287 Score = 40.0 bits (92), Expect = 0.005 Identities = 15/26 (57%), Positives = 21/26 (80%) Frame = -1 Query: 579 WDVMVDLFFYRDPEEAKEQEDEAAGA 502 W+VM DL+FYRDPEE + +E++ A A Sbjct: 198 WEVMPDLYFYRDPEEIEREEEQKAAA 223
>RSSA_DROME (P38979) 40S ribosomal protein SA (p40) (Stubarista protein)| (Laminin receptor homolog) (K14) Length = 270 Score = 39.7 bits (91), Expect = 0.007 Identities = 16/24 (66%), Positives = 21/24 (87%) Frame = -1 Query: 582 KWDVMVDLFFYRDPEEAKEQEDEA 511 +W V+VDLFFYRDPEEA+++E A Sbjct: 194 EWPVVVDLFFYRDPEEAEKEEAAA 217
>RS0A_SCHPO (Q9Y7L8) 40S ribosomal protein S0-A| Length = 292 Score = 39.3 bits (90), Expect = 0.009 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = -1 Query: 579 WDVMVDLFFYRDPEEAKEQED---EAAGAPEYTAITD 478 WDVM DL+FYRDPEE + +E+ AA A E + + Sbjct: 197 WDVMPDLYFYRDPEEVEREEEAKKAAAAAAEEAQVEE 233
>RS0B_YEAST (P46654) 40S ribosomal protein S0-B (Nucleic acid-binding protein| NAB1B) Length = 251 Score = 38.9 bits (89), Expect = 0.011 Identities = 15/28 (53%), Positives = 21/28 (75%) Frame = -1 Query: 579 WDVMVDLFFYRDPEEAKEQEDEAAGAPE 496 W +M DL+FYR+PEE ++ +EAA A E Sbjct: 194 WSIMPDLYFYRNPEEVEQVAEEAAAAEE 221
>RS0_CANAL (O42817) 40S ribosomal protein S0| Length = 253 Score = 38.5 bits (88), Expect = 0.015 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Frame = -1 Query: 582 KWDVMVDLFFYRDPEEAKEQEDEAA------GAPEYTAITDYXXXAGQWGGDQWTADAPA 421 +W VM DL+FYRDPEE ++ E A GAP A T++ G+ W AD+ A Sbjct: 194 EWSVMPDLYFYRDPEEIEQNAVEEAKTEGVEGAPVAEAETEW---TGETEDVDW-ADSGA 249 Query: 420 PP 415 P Sbjct: 250 TP 251
>RS0_PNECA (Q01661) 40S ribosomal protein S0 (Extracellular matrix receptor| protein) Length = 295 Score = 38.5 bits (88), Expect = 0.015 Identities = 22/60 (36%), Positives = 31/60 (51%) Frame = -1 Query: 582 KWDVMVDLFFYRDPEEAKEQEDEAAGAPEYTAITDYXXXAGQWGGDQWTADAPAPPPVTG 403 +W +MVDL+FYRDPEE ++ + E A+ AGQ+G T+D TG Sbjct: 193 EWGIMVDLYFYRDPEETEKDTES-----EQKALEASGNPAGQFGSVPVTSDWEIAAQSTG 247
>RS0A_YEAST (P32905) 40S ribosomal protein S0-A (Nucleic acid-binding protein| NAB1A) Length = 251 Score = 37.4 bits (85), Expect = 0.032 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = -1 Query: 579 WDVMVDLFFYRDPEEAKEQEDEAAGAPE 496 W +M DL+FYRDPEE ++Q E A E Sbjct: 194 WSIMPDLYFYRDPEEVEQQVAEEATTEE 221
>RSSA_CAEEL (P46769) Probable 40S ribosomal protein SA (p40)| Length = 275 Score = 36.6 bits (83), Expect = 0.055 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = -1 Query: 576 DVMVDLFFYRDPEEAKEQED----EAAGAPEYTAITDYXXXAGQWGGDQWTAD 430 ++M DL+FYRDP E +++E + A A EY TD D W A+ Sbjct: 200 EIMPDLYFYRDPTETEKEETGAHADVAEAQEYQQPTDIDFTTQGGKVDDWAAE 252
>NFI_XYLFA (Q9PC89) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)| (Deoxyribonuclease V) (DNase V) Length = 239 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/50 (32%), Positives = 30/50 (60%) Frame = -2 Query: 266 PLLKAGSRLGWHLEMSLRLKVHIL*GMNEYLISMQSAISTLWTKTCVLGF 117 P+L G+++GW L +R K ++ + IS+ SA++ WT+ C+ G+ Sbjct: 166 PILLHGTQVGWALRSKIRCKPLMI--SPGHKISLHSALT--WTQRCLNGY 211
>NFI_XYLFT (Q87CZ0) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)| (Deoxyribonuclease V) (DNase V) Length = 239 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/50 (30%), Positives = 29/50 (58%) Frame = -2 Query: 266 PLLKAGSRLGWHLEMSLRLKVHIL*GMNEYLISMQSAISTLWTKTCVLGF 117 P+L G+++GW L + K I+ + +S+ SA++ WT+ C+ G+ Sbjct: 166 PILLHGTQVGWALRSKMHCKPLII--SPGHKVSLHSALT--WTQRCLTGY 211
>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I| Length = 536 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/81 (27%), Positives = 37/81 (45%) Frame = +1 Query: 226 SRCHPSLLPALSSGLHASLPASSSRNRRSDATFHSNRCPCCIPSTITTSNWSFSHRPLAT 405 S H S +P+ SS H+S +S + + + R I + ++TS S P T Sbjct: 143 SLSHSSSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTTT 202 Query: 406 SNRWGSRCISGPLVTTPLASS 468 +N S + +TP++SS Sbjct: 203 NNWNSSSSFTSSTSSTPISSS 223 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,954,032 Number of Sequences: 219361 Number of extensions: 1172186 Number of successful extensions: 3411 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3405 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
