ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63m23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 149 bits (75), Expect = 1e-32 Identities = 138/159 (86%) Strand = Plus / Plus Query: 347 ttgaagatctcttcagattccattggagatgaccagtaacggagtagggcttccactgtc 406 |||||||| || ||||| ||||||||||||||||||||| ||||||| | |||||||||| Sbjct: 90300 ttgaagatttcctcagactccattggagatgaccagtaatggagtagtgattccactgtc 90359 Query: 407 aatcgccgtgtcgcactcaacattgagatgaagaaccgacagccgtcaatcttatactcc 466 |||| |||||| |||| |||||| ||||||||||||||||| || |||||||| || || Sbjct: 90360 aatctccgtgtggcacccaacatcgagatgaagaaccgacaaccatcaatcttgtattct 90419 Query: 467 tctagaggatttctgtgcccaaagctccggacgttcacc 505 |||| ||| ||||| || ||||||||||| || |||||| Sbjct: 90420 tctaaagggtttctatgtccaaagctccgcacattcacc 90458 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 503 accgcagaactaagcttgttcatgttaactaaatggtccttccacaacatatcaagtgtc 562 |||||||||||||||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 90543 accgcagaactaagcttgttcatgttcaccaaatggtccttccacagagtatcaagagtc 90602 Query: 563 ttcagaagtgcttccctct 581 ||||| ||| |||||||| Sbjct: 90603 ttcagtagtatttccctct 90621 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 580 ctcaattcccctaatgtatgcatcatgataacgggactcttgca 623 ||||||||| | |||||||||||||| ||||||||||||||||| Sbjct: 90984 ctcaattcctcgaatgtatgcatcatcataacgggactcttgca 91027
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 149 bits (75), Expect = 1e-32 Identities = 138/159 (86%) Strand = Plus / Minus Query: 347 ttgaagatctcttcagattccattggagatgaccagtaacggagtagggcttccactgtc 406 |||||||| || ||||| ||||||||||||||||||||| ||||||| | |||||||||| Sbjct: 4741374 ttgaagatttcctcagactccattggagatgaccagtaatggagtagtgattccactgtc 4741315 Query: 407 aatcgccgtgtcgcactcaacattgagatgaagaaccgacagccgtcaatcttatactcc 466 |||| |||||| |||| |||||| ||||||||||||||||| || |||||||| || || Sbjct: 4741314 aatctccgtgtggcacccaacatcgagatgaagaaccgacaaccatcaatcttgtattct 4741255 Query: 467 tctagaggatttctgtgcccaaagctccggacgttcacc 505 |||| ||| ||||| || ||||||||||| || |||||| Sbjct: 4741254 tctaaagggtttctatgtccaaagctccgcacattcacc 4741216 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 503 accgcagaactaagcttgttcatgttaactaaatggtccttccacaacatatcaagtgtc 562 |||||||||||||||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 4741131 accgcagaactaagcttgttcatgttcaccaaatggtccttccacagagtatcaagagtc 4741072 Query: 563 ttcagaagtgcttccctct 581 ||||| ||| |||||||| Sbjct: 4741071 ttcagtagtatttccctct 4741053 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 580 ctcaattcccctaatgtatgcatcatgataacgggactcttgca 623 ||||||||| | |||||||||||||| ||||||||||||||||| Sbjct: 4740690 ctcaattcctcgaatgtatgcatcatcataacgggactcttgca 4740647
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 149 bits (75), Expect = 1e-32 Identities = 138/159 (86%) Strand = Plus / Minus Query: 347 ttgaagatctcttcagattccattggagatgaccagtaacggagtagggcttccactgtc 406 |||||||| || ||||| ||||||||||||||||||||| ||||||| | |||||||||| Sbjct: 4760158 ttgaagatttcctcagactccattggagatgaccagtaatggagtagtgattccactgtc 4760099 Query: 407 aatcgccgtgtcgcactcaacattgagatgaagaaccgacagccgtcaatcttatactcc 466 |||| |||||| |||| |||||| ||||||||||||||||| || |||||||| || || Sbjct: 4760098 aatctccgtgtggcacccaacatcgagatgaagaaccgacaaccatcaatcttgtattct 4760039 Query: 467 tctagaggatttctgtgcccaaagctccggacgttcacc 505 |||| ||| ||||| || ||||||||||| || |||||| Sbjct: 4760038 tctaaagggtttctatgtccaaagctccgcacattcacc 4760000 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 503 accgcagaactaagcttgttcatgttaactaaatggtccttccacaacatatcaagtgtc 562 |||||||||||||||||||||||||| || |||||||||||||||| ||||||| ||| Sbjct: 4759915 accgcagaactaagcttgttcatgttcaccaaatggtccttccacagagtatcaagagtc 4759856 Query: 563 ttcagaagtgcttccctct 581 ||||| ||| |||||||| Sbjct: 4759855 ttcagtagtatttccctct 4759837 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 580 ctcaattcccctaatgtatgcatcatgataacgggactcttgca 623 ||||||||| | |||||||||||||| ||||||||||||||||| Sbjct: 4759474 ctcaattcctcgaatgtatgcatcatcataacgggactcttgca 4759431
>gb|AC007727.2|F8K7 Arabidopsis thaliana chromosome 1 BAC F8K7 sequence, complete sequence Length = 98581 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Plus Query: 427 cattgagatgaagaaccgacagccgtcaatcttatactcctctagaggatttctgtgccc 486 |||||||||||| |||||||| || || || ||||| || |||||||| ||||| ||| | Sbjct: 22220 cattgagatgaaaaaccgacatccatcgattttatattcttctagagggtttctatgcgc 22279 Query: 487 aaa 489 ||| Sbjct: 22280 aaa 22282
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16, complete sequence Length = 170233 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 agatagtggtcaatgtctact 201 ||||||||||||||||||||| Sbjct: 101741 agatagtggtcaatgtctact 101761
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 ttcatcagatgtgatgttatt 327 ||||||||||||||||||||| Sbjct: 1160928 ttcatcagatgtgatgttatt 1160908
>gb|AC092493.1|AC092493 Drosophila melanogaster, chromosome X, region 15C-15D, BAC clone BACR10J22, complete sequence Length = 157457 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 518 ttgttcatgttaactaaatggtcct 542 ||||||||||||||||| ||||||| Sbjct: 71575 ttgttcatgttaactaattggtcct 71551
>gb|AC022347.2|AC022347 Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone BACR35G15, complete sequence Length = 168615 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 518 ttgttcatgttaactaaatggtcct 542 ||||||||||||||||| ||||||| Sbjct: 116651 ttgttcatgttaactaattggtcct 116675
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 agatagtggtcaatgtctact 201 ||||||||||||||||||||| Sbjct: 19398392 agatagtggtcaatgtctact 19398412
>ref|NM_210495.1| Eremothecium gossypii AER284Wp (AER284W), mRNA Length = 4506 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 ttcatcagatgtgatgttatt 327 ||||||||||||||||||||| Sbjct: 3398 ttcatcagatgtgatgttatt 3378
>gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 of 74 of the complete sequence Length = 314205 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 518 ttgttcatgttaactaaatggtcct 542 ||||||||||||||||| ||||||| Sbjct: 283043 ttgttcatgttaactaattggtcct 283067
>gb|AC159374.2| Gallus gallus BAC clone CH261-5A10 from chromosome unknown, complete sequence Length = 245547 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 aacatatcaagtgtcttcaga 568 ||||||||||||||||||||| Sbjct: 160465 aacatatcaagtgtcttcaga 160445
>emb|Z49125.1|CEC47G2 Caenorhabditis elegans Cosmid C47G2, complete sequence Length = 34831 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 acaacatatcaagtgtcttc 565 |||||||||||||||||||| Sbjct: 14924 acaacatatcaagtgtcttc 14905
>gb|AC122914.4| Mus musculus BAC clone RP23-26F9 from 15, complete sequence Length = 207417 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aagaaggccatccatatgaa 248 |||||||||||||||||||| Sbjct: 3277 aagaaggccatccatatgaa 3258
>gb|AC018555.5| Homo sapiens chromosome 16 clone RP11-486F10, complete sequence Length = 187844 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ccatatgaaaagcctactgttacc 263 |||||||||||||| ||||||||| Sbjct: 90831 ccatatgaaaagccaactgttacc 90808
>emb|AL353818.1|ATF14L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F14L2 Length = 107027 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 acctcatgtgtatatataat 89 |||||||||||||||||||| Sbjct: 60084 acctcatgtgtatatataat 60065
>ref|XM_929546.1| PREDICTED: Homo sapiens similar to Chloride intracellular channel protein 4 (Intracellular chloride ion channel protein p64H1) (LOC646609), mRNA Length = 600 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 atatcaaagttgcgattttt 140 |||||||||||||||||||| Sbjct: 460 atatcaaagttgcgattttt 441
>gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9, complete sequence Length = 191373 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 atatcaaagttgcgattttt 140 |||||||||||||||||||| Sbjct: 70236 atatcaaagttgcgattttt 70255 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,372,364 Number of Sequences: 3902068 Number of extensions: 5372364 Number of successful extensions: 99987 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99828 Number of HSP's gapped (non-prelim): 159 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
