ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63m21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLTP_PIG (P68266) Glycolipid transfer protein (GLTP) 48 2e-05
2GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP) 48 2e-05
3GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP) 48 2e-05
4GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP) 47 2e-05
5YB33_SCHPO (O14338) Serine-rich protein C2F12.03c in chromosome II 29 6.9
6YKGD_ECOLI (P77379) Putative HTH-type transcriptional regulator ... 29 9.0
7SYT_PYRHO (O58430) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 29 9.0

>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = -3

Query: 503 TNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHGWLASSSFT 342
           T  L+WL R + F+    +++ D      HP+     A T +Y   LKK+HGW+    F 
Sbjct: 90  TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYHGWIVQKIFQ 148

Query: 341 VAMKLAPNKDKFMEVIS 291
            A+  AP K  F++ +S
Sbjct: 149 AALYAAPYKSDFLKALS 165



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>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = -3

Query: 503 TNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHGWLASSSFT 342
           T  L+WL R + F+    +++ D      HP+     A T +Y   LKK+HGW+    F 
Sbjct: 90  TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYHGWIVQKIFQ 148

Query: 341 VAMKLAPNKDKFMEVIS 291
            A+  AP K  F++ +S
Sbjct: 149 AALYAAPYKSDFLKALS 165



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>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = -3

Query: 503 TNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHGWLASSSFT 342
           T  L+WL R + F+    +++ D      HP+     A T +Y   LKK+HGW+    F 
Sbjct: 90  TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYHGWIVQKIFQ 148

Query: 341 VAMKLAPNKDKFMEVIS 291
            A+  AP K  F++ +S
Sbjct: 149 AALYAAPYKSDFLKALS 165



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>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)|
          Length = 208

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = -3

Query: 503 TNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWHGWLASSSFT 342
           T  LLWL R + F+    +++ D      HP+     A   +Y   LKK+HGWL    F 
Sbjct: 90  TLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-NKAYEMALKKYHGWLVQKIFK 148

Query: 341 VAMKLAPNKDKFMEVIS 291
            A+  AP K  F++ +S
Sbjct: 149 AALYAAPYKSDFLKALS 165



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>YB33_SCHPO (O14338) Serine-rich protein C2F12.03c in chromosome II|
          Length = 891

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 369 MPFLQSFCV*ISTCLTHSPVWMVKQI 446
           MP L   CV  S+CL +  VW+ K I
Sbjct: 574 MPMLLPLCVLTSSCLQNGDVWLTKDI 599



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>YKGD_ECOLI (P77379) Putative HTH-type transcriptional regulator ykgD|
          Length = 284

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -3

Query: 488 WLTRAMDFLVELFRNLLDHPDWTMSQACTDSYTKTLKKWHGWLASSSFTVAMKLAP 321
           WL  A+ FL +  R+ +   D   SQ C   +T  +++W   + +    +++ L P
Sbjct: 122 WLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHP 177



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>SYT_PYRHO (O58430) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 625

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
 Frame = -3

Query: 383 LKKWHGWLASSSFTVAMKLAPNKDKF-------MEVISGTGDIKADIEKFCTTFYPFLKE 225
           L++   +      T+A  L   KD+F       MEV+ G G    D E        F KE
Sbjct: 338 LRRLRAFTMPDMHTLAKDLEQAKDEFKKQFKLSMEVLKGVGLTPEDYEVAIRFTEDFWKE 397

Query: 224 NHDFLASV 201
           N DF+  +
Sbjct: 398 NRDFIVEL 405


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,439,312
Number of Sequences: 219361
Number of extensions: 1465057
Number of successful extensions: 3494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3494
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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