Clone Information

BLAST Search Result

Clone Name	rbah63m21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_466814.1\| Oryza sativa (japonica cultivar-group), mRNA	410	e-111
2	dbj\|AK061679.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	410	e-111
3	gb\|BT024039.1\| Zea mays clone EL01N0429A01 mRNA sequence	295	7e-77
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	170	3e-39
5	dbj\|AP004053.3\| Oryza sativa (japonica cultivar-group) genomic D...	170	3e-39
6	dbj\|AP006846.2\| Oryza sativa (japonica cultivar-group) genomic D...	170	3e-39
7	ref\|NM_201859.1\| Arabidopsis thaliana unknown protein AT2G33470 ...	52	0.002
8	ref\|NM_128907.2\| Arabidopsis thaliana unknown protein AT2G33470 ...	52	0.002
9	gb\|AC002332.3\| Arabidopsis thaliana chromosome 2 clone F4P9 map ...	52	0.002
10	gb\|BT005674.1\| Arabidopsis thaliana clone U50148 unknown protein...	52	0.002
11	gb\|BT004207.1\| Arabidopsis thaliana clone RAFL15-28-H11 (R50148)...	52	0.002
12	gb\|AY085884.1\| Arabidopsis thaliana clone 19302 mRNA, complete s...	52	0.002
13	ref\|NM_187035.1\| Oryza sativa (japonica cultivar-group), mRNA	48	0.029
14	ref\|XM_647817.1\| Entamoeba histolytica HM-1:IMSS Ras GTPase acti...	42	1.8
15	emb\|AL356476.13\| Human DNA sequence from clone RP11-655H13 on ch...	42	1.8
16	gb\|AC116158.5\| Homo sapiens chromosome , clone RP11-102L12, comp...	42	1.8
17	gb\|AC144481.6\| Medicago truncatula clone mth2-35e10, complete se...	42	1.8
18	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
19	dbj\|AP004395.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
20	ref\|NM_113399.1\| Arabidopsis thaliana DNA binding AT3G24870 mRNA...	40	7.1
21	ref\|NM_113400.3\| Arabidopsis thaliana DNA binding AT3G24880 mRNA...	40	7.1
22	gb\|AC113302.13\| Mus musculus chromosome 5, clone RP23-431M7, com...	40	7.1
23	gb\|AC099468.9\| Rattus norvegicus 1 BAC CH230-37P5 (Children's Ho...	40	7.1
24	gb\|AC145868.2\| Pan troglodytes BAC clone RP43-39F11 from 7, comp...	40	7.1
25	gb\|AC131742.2\| Mus musculus BAC clone RP23-67I3 from chromosome ...	40	7.1
26	gb\|AC124189.3\| Mus musculus BAC clone RP23-254C8 from 5, complet...	40	7.1
27	ref\|XM_646239.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	7.1
28	emb\|CR730554.1\|CNS0GQN3 Tetraodon nigroviridis full-length cDNA	40	7.1
29	emb\|CR727607.2\|CNS0GOD9 Tetraodon nigroviridis full-length cDNA	40	7.1
30	ref\|XM_649042.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	7.1
31	emb\|CR703130.2\|CNS0G5HI Tetraodon nigroviridis full-length cDNA	40	7.1
32	emb\|CR687850.2\|CNS0FTP2 Tetraodon nigroviridis full-length cDNA	40	7.1
33	emb\|CR684165.2\|CNS0FQUP Tetraodon nigroviridis full-length cDNA	40	7.1
34	emb\|CR661825.2\|CNS0F9MV Tetraodon nigroviridis full-length cDNA	40	7.1
35	emb\|CR657762.1\|CNS0F6I0 Tetraodon nigroviridis full-length cDNA	40	7.1
36	emb\|CR642978.2\|CNS0EV3C Tetraodon nigroviridis full-length cDNA	40	7.1
37	emb\|CR543861.1\| Acinetobacter sp. ADP1 complete genome	40	7.1
38	gb\|AC079942.12\| Homo sapiens 3 BAC RP11-469L4 (Roswell Park Canc...	40	7.1
39	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	40	7.1
40	gb\|AC157352.2\| Mus musculus BAC clone RP24-483A21 from chromosom...	40	7.1
41	dbj\|AP004880.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.1
42	dbj\|AB028609.2\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	7.1
43	gb\|AC155305.2\| Mus musculus BAC clone RP24-182I21 from 12, compl...	40	7.1
44	gb\|AC154420.2\| Mus musculus BAC clone RP24-212L9 from 14, comple...	40	7.1
45	gb\|AC147891.2\| Xenopus tropicalis clone CH216-2E23, complete seq...	40	7.1
46	gb\|AE016830.1\| Enterococcus faecalis V583, complete genome	40	7.1
47	gb\|U67077.1\|XLU67077 Xenopus laevis zing finger protein XFDL141 ...	40	7.1

>ref|XM_466814.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 978

 Score =  410 bits (207), Expect = e-111
 Identities = 318/355 (89%)
 Strand = Plus / Minus

                                                                       
Query: 170 tgcattaagaagccttcatgtcatcgagtccaacactggccaggaagtcatgattctcct 229
           ||||||||||||||||||  ||||| ||||||||||||||||| || ||||||||||| |
Sbjct: 754 tgcattaagaagccttcagatcatcaagtccaacactggccagaaaatcatgattctctt 695

                                                                       
Query: 230 tgagaaagggataaaaggtggtgcagaatttctcaatgtctgctttgatgtcacccgttc 289
           ||||||| || |||||||| |||||||||||||| || || ||||| |||||||||||||
Sbjct: 694 tgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagcttttatgtcacccgttc 635

                                                                       
Query: 290 cgctaattacctccataaatttatctttgttaggagcaagcttcatagcaaccgtaaaac 349
           | ||||| |||||||||||||| ||| | ||||||||||||||||| || || |||||||
Sbjct: 634 cactaatgacctccataaatttctctctattaggagcaagcttcattgccactgtaaaac 575

                                                                       
Query: 350 tggagctggcgagccagccatgccatttcttcagagtttttgtgtatgaatcagtacatg 409
           | || ||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 574 tagaactggcaagccaaccatgccatttcttcagagttttggtatatgaatcagtacaag 515

                                                                       
Query: 410 cttgactcatagtccagtctggatggtcaagcagattacggaacagttcaacaaggaagt 469
           |||||||||||||||||||| |||| |||||||| |||||||| | ||||||||||||||
Sbjct: 514 cttgactcatagtccagtcttgatgctcaagcaggttacggaataattcaacaaggaagt 455

                                                                  
Query: 470 ccatggccctcgtgagccatagaagtccattggtgcagcttgatgaaccttttgc 524
           |||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 454 ccatagccctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgc 400

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>dbj|AK061679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H10, full
           insert sequence
          Length = 978

 Score =  410 bits (207), Expect = e-111
 Identities = 318/355 (89%)
 Strand = Plus / Minus

                                                                       
Query: 170 tgcattaagaagccttcatgtcatcgagtccaacactggccaggaagtcatgattctcct 229
           ||||||||||||||||||  ||||| ||||||||||||||||| || ||||||||||| |
Sbjct: 754 tgcattaagaagccttcagatcatcaagtccaacactggccagaaaatcatgattctctt 695

                                                                       
Query: 230 tgagaaagggataaaaggtggtgcagaatttctcaatgtctgctttgatgtcacccgttc 289
           ||||||| || |||||||| |||||||||||||| || || ||||| |||||||||||||
Sbjct: 694 tgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagcttttatgtcacccgttc 635

                                                                       
Query: 290 cgctaattacctccataaatttatctttgttaggagcaagcttcatagcaaccgtaaaac 349
           | ||||| |||||||||||||| ||| | ||||||||||||||||| || || |||||||
Sbjct: 634 cactaatgacctccataaatttctctctattaggagcaagcttcattgccactgtaaaac 575

                                                                       
Query: 350 tggagctggcgagccagccatgccatttcttcagagtttttgtgtatgaatcagtacatg 409
           | || ||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 574 tagaactggcaagccaaccatgccatttcttcagagttttggtatatgaatcagtacaag 515

                                                                       
Query: 410 cttgactcatagtccagtctggatggtcaagcagattacggaacagttcaacaaggaagt 469
           |||||||||||||||||||| |||| |||||||| |||||||| | ||||||||||||||
Sbjct: 514 cttgactcatagtccagtcttgatgctcaagcaggttacggaataattcaacaaggaagt 455

                                                                  
Query: 470 ccatggccctcgtgagccatagaagtccattggtgcagcttgatgaaccttttgc 524
           |||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 454 ccatagccctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgc 400

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>gb|BT024039.1| Zea mays clone EL01N0429A01 mRNA sequence
          Length = 807

 Score =  295 bits (149), Expect = 7e-77
 Identities = 299/349 (85%)
 Strand = Plus / Minus

                                                                       
Query: 178 gaagccttcatgtcatcgagtccaacactggccaggaagtcatgattctccttgagaaag 237
           ||||||||||| ||||| || ||||| || ||||| || || ||||| || |||||||| 
Sbjct: 559 gaagccttcatatcatcaagaccaacgctcgccagaaactcgtgattttctttgagaaaa 500

                                                                       
Query: 238 ggataaaaggtggtgcagaatttctcaatgtctgctttgatgtcacccgttccgctaatt 297
           ||| | ||||| ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| 
Sbjct: 499 ggagagaaggttgtgcaaaatttctcaatatctgcattgatatcaccagttccactaatg 440

                                                                       
Query: 298 acctccataaatttatctttgttaggagcaagcttcatagcaaccgtaaaactggagctg 357
           |||||||| ||||||||| | |||||||  |||||||| || ||||||||||| || |||
Sbjct: 439 acctccatgaatttatctctattaggagagagcttcatggccaccgtaaaactagaactg 380

                                                                       
Query: 358 gcgagccagccatgccatttcttcagagtttttgtgtatgaatcagtacatgcttgactc 417
           || |||||||||||  |||||||||| || || |||||||||||||| || |||||| ||
Sbjct: 379 gcaagccagccatgaaatttcttcagggtcttggtgtatgaatcagtgcaagcttgagtc 320

                                                                       
Query: 418 atagtccagtctggatggtcaagcagattacggaacagttcaacaaggaagtccatggcc 477
           || |||||||||||||| |||||||| ||||||||||  ||||||||||| |||||||||
Sbjct: 319 atggtccagtctggatgctcaagcaggttacggaacaactcaacaaggaaatccatggcc 260

                                                            
Query: 478 ctcgtgagccatagaagtccattggtgcagcttgatgaaccttttgcgg 526
           ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||
Sbjct: 259 ctcgtgagccacagaagaccatttgtgcagcttgaggaacctttcgcgg 211

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  170 bits (86), Expect = 3e-39
 Identities = 128/142 (90%)
 Strand = Plus / Minus

                                                                            
Query: 338      caaccgtaaaactggagctggcgagccagccatgccatttcttcagagtttttgtgtatg 397
                |||| |||||||| || ||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct: 24801215 caactgtaaaactagaactggcaagccaaccatgccatttcttcagagttttggtatatg 24801156

                                                                            
Query: 398      aatcagtacatgcttgactcatagtccagtctggatggtcaagcagattacggaacagtt 457
                |||||||||| ||||||||||||||||||||| |||| |||||||| |||||||| | ||
Sbjct: 24801155 aatcagtacaagcttgactcatagtccagtcttgatgctcaagcaggttacggaataatt 24801096

                                      
Query: 458      caacaaggaagtccatggccct 479
                |||||||||||||||| |||||
Sbjct: 24801095 caacaaggaagtccatagccct 24801074



 Score =  133 bits (67), Expect = 6e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                            
Query: 217      tcatgattctccttgagaaagggataaaaggtggtgcagaatttctcaatgtctgctttg 276
                ||||||||||| |||||||| || |||||||| |||||||||||||| || || ||||| 
Sbjct: 24801750 tcatgattctctttgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagctttt 24801691

                                                                           
Query: 277      atgtcacccgttccgctaattacctccataaatttatctttgttaggagcaagcttcat 335
                |||||||||||||| ||||| |||||||||||||| ||| | |||||||||||||||||
Sbjct: 24801690 atgtcacccgttccactaatgacctccataaatttctctctattaggagcaagcttcat 24801632



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                                
Query: 477      cctcgtgagccatagaagtccattggtgcagcttgatgaaccttttgc 524
                |||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 24800995 cctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgc 24800948



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 170      tgcattaagaagccttcatgtcatcgagtccaacactggcc 210
                ||||||||||||||||||  ||||| |||||||||||||||
Sbjct: 24801886 tgcattaagaagccttcagatcatcaagtccaacactggcc 24801846



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 303      cataaatttatctttgttag 322
                ||||||||||||||||||||
Sbjct: 30753977 cataaatttatctttgttag 30753996

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>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1234_B11
          Length = 128095

 Score =  170 bits (86), Expect = 3e-39
 Identities = 128/142 (90%)
 Strand = Plus / Minus

                                                                          
Query: 338    caaccgtaaaactggagctggcgagccagccatgccatttcttcagagtttttgtgtatg 397
              |||| |||||||| || ||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct: 100863 caactgtaaaactagaactggcaagccaaccatgccatttcttcagagttttggtatatg 100804

                                                                          
Query: 398    aatcagtacatgcttgactcatagtccagtctggatggtcaagcagattacggaacagtt 457
              |||||||||| ||||||||||||||||||||| |||| |||||||| |||||||| | ||
Sbjct: 100803 aatcagtacaagcttgactcatagtccagtcttgatgctcaagcaggttacggaataatt 100744

                                    
Query: 458    caacaaggaagtccatggccct 479
              |||||||||||||||| |||||
Sbjct: 100743 caacaaggaagtccatagccct 100722



 Score =  133 bits (67), Expect = 6e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                          
Query: 217    tcatgattctccttgagaaagggataaaaggtggtgcagaatttctcaatgtctgctttg 276
              ||||||||||| |||||||| || |||||||| |||||||||||||| || || ||||| 
Sbjct: 101398 tcatgattctctttgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagctttt 101339

                                                                         
Query: 277    atgtcacccgttccgctaattacctccataaatttatctttgttaggagcaagcttcat 335
              |||||||||||||| ||||| |||||||||||||| ||| | |||||||||||||||||
Sbjct: 101338 atgtcacccgttccactaatgacctccataaatttctctctattaggagcaagcttcat 101280



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                              
Query: 477    cctcgtgagccatagaagtccattggtgcagcttgatgaaccttttgc 524
              |||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 100643 cctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgc 100596



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 170    tgcattaagaagccttcatgtcatcgagtccaacactggcc 210
              ||||||||||||||||||  ||||| |||||||||||||||
Sbjct: 101534 tgcattaagaagccttcagatcatcaagtccaacactggcc 101494

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>dbj|AP006846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
            fosmid clone:OSJNOa283G08
          Length = 38265

 Score =  170 bits (86), Expect = 3e-39
 Identities = 128/142 (90%)
 Strand = Plus / Minus

                                                                        
Query: 338  caaccgtaaaactggagctggcgagccagccatgccatttcttcagagtttttgtgtatg 397
            |||| |||||||| || ||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct: 4579 caactgtaaaactagaactggcaagccaaccatgccatttcttcagagttttggtatatg 4520

                                                                        
Query: 398  aatcagtacatgcttgactcatagtccagtctggatggtcaagcagattacggaacagtt 457
            |||||||||| ||||||||||||||||||||| |||| |||||||| |||||||| | ||
Sbjct: 4519 aatcagtacaagcttgactcatagtccagtcttgatgctcaagcaggttacggaataatt 4460

                                  
Query: 458  caacaaggaagtccatggccct 479
            |||||||||||||||| |||||
Sbjct: 4459 caacaaggaagtccatagccct 4438



 Score =  133 bits (67), Expect = 6e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                        
Query: 217  tcatgattctccttgagaaagggataaaaggtggtgcagaatttctcaatgtctgctttg 276
            ||||||||||| |||||||| || |||||||| |||||||||||||| || || ||||| 
Sbjct: 5114 tcatgattctctttgagaaaagggtaaaaggtcgtgcagaatttctcgatatcagctttt 5055

                                                                       
Query: 277  atgtcacccgttccgctaattacctccataaatttatctttgttaggagcaagcttcat 335
            |||||||||||||| ||||| |||||||||||||| ||| | |||||||||||||||||
Sbjct: 5054 atgtcacccgttccactaatgacctccataaatttctctctattaggagcaagcttcat 4996



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 477  cctcgtgagccatagaagtccattggtgcagcttgatgaaccttttgc 524
            |||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 4359 cctcgtgagccacagaagtccatttgtgcagcttgacgaaccttttgc 4312



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 170  tgcattaagaagccttcatgtcatcgagtccaacactggcc 210
            ||||||||||||||||||  ||||| |||||||||||||||
Sbjct: 5250 tgcattaagaagccttcagatcatcaagtccaacactggcc 5210

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>ref|NM_201859.1| Arabidopsis thaliana unknown protein AT2G33470 transcript variant
           AT2G33470.2 mRNA, complete cds
          Length = 865

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 352 gagctggcgagccagccatgccatttcttcagagtttttgtgtatgaatcagtacatgct 411
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 504 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 445

             
Query: 412 tg 413
           ||
Sbjct: 444 tg 443

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>ref|NM_128907.2| Arabidopsis thaliana unknown protein AT2G33470 transcript variant
           AT2G33470.1 mRNA, complete cds
          Length = 981

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 352 gagctggcgagccagccatgccatttcttcagagtttttgtgtatgaatcagtacatgct 411
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 620 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 561

             
Query: 412 tg 413
           ||
Sbjct: 560 tg 559

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>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete
             sequence
          Length = 152593

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 352   gagctggcgagccagccatgccatttcttcagagtttttgtgtatgaatcagtacatgct 411
             |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 80824 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 80883

               
Query: 412   tg 413
             ||
Sbjct: 80884 tg 80885

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>gb|BT005674.1| Arabidopsis thaliana clone U50148 unknown protein (At2g33470) mRNA,
           complete cds
          Length = 640

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 352 gagctggcgagccagccatgccatttcttcagagtttttgtgtatgaatcagtacatgct 411
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 431 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 372

             
Query: 412 tg 413
           ||
Sbjct: 371 tg 370

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>gb|BT004207.1| Arabidopsis thaliana clone RAFL15-28-H11 (R50148) unknown protein
           (At2g33470) mRNA, complete cds
          Length = 893

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 352 gagctggcgagccagccatgccatttcttcagagtttttgtgtatgaatcagtacatgct 411
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 524 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 465

             
Query: 412 tg 413
           ||
Sbjct: 464 tg 463

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>gb|AY085884.1| Arabidopsis thaliana clone 19302 mRNA, complete sequence
          Length = 945

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 352 gagctggcgagccagccatgccatttcttcagagtttttgtgtatgaatcagtacatgct 411
           |||||||||||||| || ||||||||||| || ||||||  |||||| |||| ||| |||
Sbjct: 618 gagctggcgagccatccgtgccatttcttgagtgttttttggtatgagtcagcacaagct 559

             
Query: 412 tg 413
           ||
Sbjct: 558 tg 557

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>ref|NM_187035.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 609

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 322 ggagcaagcttcatagcaaccgtaaaactggagctggcgagccagccatgccatttcttc 381
           ||||||||||| || ||||||| ||| || || || || ||||| || ||||||||||| 
Sbjct: 461 ggagcaagctttatggcaaccgaaaagcttgaactcgccagccatccgtgccatttcttg 402

                   
Query: 382 agagtttt 389
           ||||||||
Sbjct: 401 agagtttt 394



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 444 attacggaacagttcaacaaggaagtccatggc 476
           |||| |||||||| |||| ||||||||||||||
Sbjct: 339 attatggaacagtgcaaccaggaagtccatggc 307

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>ref|XM_647817.1| Entamoeba histolytica HM-1:IMSS Ras GTPase activating protein,
            putative (100.t00030) partial mRNA
          Length = 2310

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   tgttttgatagacttattatt 61
            |||||||||||||||||||||
Sbjct: 2047 tgttttgatagacttattatt 2067

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>emb|AL356476.13| Human DNA sequence from clone RP11-655H13 on chromosome 10 Contains a
              mitogen-activated protein kinase-activated protein kinase 5
              (MAPKAPK5) pseudogene and a novel gene, complete sequence
          Length = 184510

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 405    acatgcttgactcatagtcca 425
              |||||||||||||||||||||
Sbjct: 154862 acatgcttgactcatagtcca 154882

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>gb|AC116158.5| Homo sapiens chromosome , clone RP11-102L12, complete sequence
          Length = 159236

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 173    attaagaagccttcatgtcat 193
              |||||||||||||||||||||
Sbjct: 138153 attaagaagccttcatgtcat 138133

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>gb|AC144481.6| Medicago truncatula clone mth2-35e10, complete sequence
          Length = 127189

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 361   agccagccatgccatttcttcagagtttttgtgtatgaatcagtacatgcttg 413
             |||||||||||||| ||||| ||||| ||  | || ||||||||||| |||||
Sbjct: 10350 agccagccatgccacttctttagagtcttgttataggaatcagtacaggcttg 10298

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 444      attacggaacagttcaacaaggaagtccatggc 476
                |||| |||||||| |||| ||||||||||||||
Sbjct: 15168600 attatggaacagtgcaaccaggaagtccatggc 15168568

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>dbj|AP004395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0030H06
          Length = 147890

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 444   attacggaacagttcaacaaggaagtccatggc 476
             |||| |||||||| |||| ||||||||||||||
Sbjct: 35349 attatggaacagtgcaaccaggaagtccatggc 35317

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>ref|NM_113399.1| Arabidopsis thaliana DNA binding AT3G24870 mRNA, complete cds
          Length = 5526

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 362  gccagccatgccatttcttc 381
            ||||||||||||||||||||
Sbjct: 1745 gccagccatgccatttcttc 1726

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>ref|NM_113400.3| Arabidopsis thaliana DNA binding AT3G24880 mRNA, complete cds
          Length = 6089

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 362  gccagccatgccatttcttc 381
            ||||||||||||||||||||
Sbjct: 1760 gccagccatgccatttcttc 1741

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>gb|AC113302.13| Mus musculus chromosome 5, clone RP23-431M7, complete sequence
          Length = 201427

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 412   tgactcatagtccagtctggatgg 435
             |||||||||||||||| |||||||
Sbjct: 51044 tgactcatagtccagtgtggatgg 51021

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>gb|AC099468.9| Rattus norvegicus 1 BAC CH230-37P5 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 212177

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    tgtattcttggccacaatag 117
             ||||||||||||||||||||
Sbjct: 30323 tgtattcttggccacaatag 30304

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>gb|AC145868.2| Pan troglodytes BAC clone RP43-39F11 from 7, complete sequence
          Length = 209787

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    aatagaatttgagaaaatag 132
              ||||||||||||||||||||
Sbjct: 114914 aatagaatttgagaaaatag 114895

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>gb|AC131742.2| Mus musculus BAC clone RP23-67I3 from chromosome 1, complete sequence
          Length = 196557

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   agaatttgagaaaatagcaa 135
             ||||||||||||||||||||
Sbjct: 56802 agaatttgagaaaatagcaa 56783

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>gb|AC124189.3| Mus musculus BAC clone RP23-254C8 from 5, complete sequence
          Length = 150507

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 412   tgactcatagtccagtctggatgg 435
             |||||||||||||||| |||||||
Sbjct: 15040 tgactcatagtccagtgtggatgg 15063

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>ref|XM_646239.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (170.t00017)
           partial mRNA
          Length = 696

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aaatttatctttgttaggag 325
           ||||||||||||||||||||
Sbjct: 378 aaatttatctttgttaggag 397

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>emb|CR730554.1|CNS0GQN3 Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 tgcttgactcatagtccagt 427
           ||||||||||||||||||||
Sbjct: 595 tgcttgactcatagtccagt 614

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>emb|CR727607.2|CNS0GOD9 Tetraodon nigroviridis full-length cDNA
          Length = 1331

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 tgcttgactcatagtccagt 427
           ||||||||||||||||||||
Sbjct: 605 tgcttgactcatagtccagt 624

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>ref|XM_649042.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (62.t00033)
           partial mRNA
          Length = 2889

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 aatagaatttgagaaaatag 132
           ||||||||||||||||||||
Sbjct: 132 aatagaatttgagaaaatag 151

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>emb|CR703130.2|CNS0G5HI Tetraodon nigroviridis full-length cDNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 tgcttgactcatagtccagt 427
           ||||||||||||||||||||
Sbjct: 527 tgcttgactcatagtccagt 546

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>emb|CR687850.2|CNS0FTP2 Tetraodon nigroviridis full-length cDNA
          Length = 1120

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 tgcttgactcatagtccagt 427
           ||||||||||||||||||||
Sbjct: 654 tgcttgactcatagtccagt 673

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>emb|CR684165.2|CNS0FQUP Tetraodon nigroviridis full-length cDNA
          Length = 953

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 tgcttgactcatagtccagt 427
           ||||||||||||||||||||
Sbjct: 225 tgcttgactcatagtccagt 244

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>emb|CR661825.2|CNS0F9MV Tetraodon nigroviridis full-length cDNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 tgcttgactcatagtccagt 427
           ||||||||||||||||||||
Sbjct: 314 tgcttgactcatagtccagt 333

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>emb|CR657762.1|CNS0F6I0 Tetraodon nigroviridis full-length cDNA
          Length = 1311

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 tgcttgactcatagtccagt 427
           ||||||||||||||||||||
Sbjct: 581 tgcttgactcatagtccagt 600

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>emb|CR642978.2|CNS0EV3C Tetraodon nigroviridis full-length cDNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 tgcttgactcatagtccagt 427
           ||||||||||||||||||||
Sbjct: 370 tgcttgactcatagtccagt 389

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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 507     gcttgatgaaccttttgcgg 526
               ||||||||||||||||||||
Sbjct: 1483789 gcttgatgaaccttttgcgg 1483808

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>gb|AC079942.12| Homo sapiens 3 BAC RP11-469L4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 171832

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    taagtagctaatatgggtca 28
            ||||||||||||||||||||
Sbjct: 9095 taagtagctaatatgggtca 9114

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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 500     tggtgcagcttgatgaacct 519
               ||||||||||||||||||||
Sbjct: 3543799 tggtgcagcttgatgaacct 3543780

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>gb|AC157352.2| Mus musculus BAC clone RP24-483A21 from chromosome 12, complete
             sequence
          Length = 131417

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ccataaatttatctttgtta 321
             ||||||||||||||||||||
Sbjct: 84860 ccataaatttatctttgtta 84879

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>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487D09
          Length = 161531

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   cataaatttatctttgttag 322
             ||||||||||||||||||||
Sbjct: 94124 cataaatttatctttgttag 94143

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>dbj|AB028609.2| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8
          Length = 78529

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   gccagccatgccatttcttc 381
             ||||||||||||||||||||
Sbjct: 65045 gccagccatgccatttcttc 65064



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   gccagccatgccatttcttc 381
             ||||||||||||||||||||
Sbjct: 53786 gccagccatgccatttcttc 53805

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>gb|AC155305.2| Mus musculus BAC clone RP24-182I21 from 12, complete sequence
          Length = 172724

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ccataaatttatctttgtta 321
             ||||||||||||||||||||
Sbjct: 12035 ccataaatttatctttgtta 12054

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>gb|AC154420.2| Mus musculus BAC clone RP24-212L9 from 14, complete sequence
          Length = 159591

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 374    atttcttcagagtttttgtgtatg 397
              |||||||||| |||||||||||||
Sbjct: 142675 atttcttcagtgtttttgtgtatg 142652

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>gb|AC147891.2| Xenopus tropicalis clone CH216-2E23, complete sequence
          Length = 209003

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    atttatctttgttaggagca 327
              ||||||||||||||||||||
Sbjct: 166370 atttatctttgttaggagca 166389

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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     aattacctccataaatttat 313
               ||||||||||||||||||||
Sbjct: 2252598 aattacctccataaatttat 2252617

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>gb|U67077.1|XLU67077 Xenopus laevis zing finger protein XFDL141 gene, complete cds
          Length = 5163

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  agtccaacactggccaggaa 215
            ||||||||||||||||||||
Sbjct: 4847 agtccaacactggccaggaa 4828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,087,931
Number of Sequences: 3902068
Number of extensions: 5087931
Number of successful extensions: 96619
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96390
Number of HSP's gapped (non-prelim): 229
length of query: 526
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 503
effective length of database: 17,143,297,704
effective search space: 8623078745112
effective search space used: 8623078745112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result